HG10003601 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAATATTATTCCTACTTGTCCTGTCTGCTCAAGTAATGTTGAATCCACCGATCACATTCTTATAAGTTGTCCTCGGACAAAACTTATATGGGATCAGATTTCGACTTCGAACCTTCTAAAGGAGGATTTGAATAATAATTTCAAGGAACGCTGGCATATGTTAAGCTTGAACTGCAACAAGGATGAGTTGAATATTTTTGCTATTGTGTTGGTCTATATGGAATGACAGAAAGAACTTCTGGTTAGGCAACTCGATTCCTGATCACAGTGTAAGAGGGAAGTGGATTTTCAAGTATTATGAAGACTTTTTAAAGTCTAGCTATTCTGCTTGAAGTTCTATACTACCAAAGGATCTGTTGAATCCTATTCAGAGAGGTGGTTGGACCAAACTGCCCCCTGATTTCTTTAAACTAAATGTTGATGCAGCTTGTGTGCAGGGTGTTCCGATTACTGGTTTGGGGGCTATAATCAGAGATTCCAAAGGACACATTACTGGTGCTGCTGCTAAGATGATTAATCTGGATTTTGATCCTCCTCTAGCCGAAGTTCTCGCTATCAGAGAAGGAATTCAGCTTGCTTCCAAATTTCACTGCTCGAATCTTATTGTGGAATCTGATTGCTCCCCAAGCTATTAA ATGAATATTATTCCTACTTGTCCTGTCTGCTCAAGTAATGTTGAATCCACCGATCACATTCTTATAAGTTGTCCTCGGACAAAACTTATATGGGATCAGATTTCGACTTCGAACCTTCTAAAGGAGGATTTGAATAATAATTTCAAGGAACGCTGGCATATGTTAAGCTTGAACTGCAACAAGGATGAGTTGAATATTTTTGCTATTGATCTGTTGAATCCTATTCAGAGAGGTGGTTGGACCAAACTGCCCCCTGATTTCTTTAAACTAAATGTTGATGCAGCTTGTGTGCAGGGTGTTCCGATTACTGGTTTGGGGGCTATAATCAGAGATTCCAAAGGACACATTACTGGTGCTGCTGCTAAGATGATTAATCTGGATTTTGATCCTCCTCTAGCCGAAGTTCTCGCTATCAGAGAAGGAATTCAGCTTGCTTCCAAATTTCACTGCTCGAATCTTATTGTGGAATCTGATTGCTCCCCAAGCTATTAA ATGAATATTATTCCTACTTGTCCTGTCTGCTCAAGTAATGTTGAATCCACCGATCACATTCTTATAAGTTGTCCTCGGACAAAACTTATATGGGATCAGATTTCGACTTCGAACCTTCTAAAGGAGGATTTGAATAATAATTTCAAGGAACGCTGGCATATGTTAAGCTTGAACTGCAACAAGGATGAGTTGAATATTTTTGCTATTGATCTGTTGAATCCTATTCAGAGAGGTGGTTGGACCAAACTGCCCCCTGATTTCTTTAAACTAAATGTTGATGCAGCTTGTGTGCAGGGTGTTCCGATTACTGGTTTGGGGGCTATAATCAGAGATTCCAAAGGACACATTACTGGTGCTGCTGCTAAGATGATTAATCTGGATTTTGATCCTCCTCTAGCCGAAGTTCTCGCTATCAGAGAAGGAATTCAGCTTGCTTCCAAATTTCACTGCTCGAATCTTATTGTGGAATCTGATTGCTCCCCAAGCTATTAA MNIIPTCPVCSSNVESTDHILISCPRTKLIWDQISTSNLLKEDLNNNFKERWHMLSLNCNKDELNIFAIDLLNPIQRGGWTKLPPDFFKLNVDAACVQGVPITGLGAIIRDSKGHITGAAAKMINLDFDPPLAEVLAIREGIQLASKFHCSNLIVESDCSPSY Homology
BLAST of HG10003601 vs. NCBI nr
Match: XP_028111659.1 (uncharacterized protein LOC114309966 [Camellia sinensis]) HSP 1 Score: 82.4 bits (202), Expect = 3.9e-12 Identity = 46/152 (30.26%), Postives = 70/152 (46.05%), Query Frame = 0
BLAST of HG10003601 vs. NCBI nr
Match: XP_026459229.1 (uncharacterized protein LOC113359871 [Papaver somniferum]) HSP 1 Score: 79.0 bits (193), Expect = 4.3e-11 Identity = 55/180 (30.56%), Postives = 79/180 (43.89%), Query Frame = 0
BLAST of HG10003601 vs. NCBI nr
Match: KAF7838458.1 (reverse transcriptase [Senna tora]) HSP 1 Score: 78.6 bits (192), Expect = 5.7e-11 Identity = 55/178 (30.90%), Postives = 86/178 (48.31%), Query Frame = 0
BLAST of HG10003601 vs. NCBI nr
Match: KAE8772052.1 (hypothetical protein D1007_55969 [Hordeum vulgare]) HSP 1 Score: 78.2 bits (191), Expect = 7.4e-11 Identity = 53/201 (26.37%), Postives = 79/201 (39.30%), Query Frame = 0
BLAST of HG10003601 vs. NCBI nr
Match: XP_030926547.1 (uncharacterized protein LOC115953156 [Quercus lobata]) HSP 1 Score: 78.2 bits (191), Expect = 7.4e-11 Identity = 50/195 (25.64%), Postives = 77/195 (39.49%), Query Frame = 0
BLAST of HG10003601 vs. ExPASy TrEMBL
Match: M5X848 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G063400 PE=4 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 4.7e-11 Identity = 48/167 (28.74%), Postives = 81/167 (48.50%), Query Frame = 0
BLAST of HG10003601 vs. ExPASy TrEMBL
Match: A0A453EWI8 (Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 6.1e-11 Identity = 54/207 (26.09%), Postives = 92/207 (44.44%), Query Frame = 0
BLAST of HG10003601 vs. ExPASy TrEMBL
Match: A0A2K2CVF0 (RNase H domain-containing protein OS=Brachypodium distachyon OX=15368 GN=BRADI_3g05652v3 PE=4 SV=1) HSP 1 Score: 76.3 bits (186), Expect = 1.4e-10 Identity = 37/84 (44.05%), Postives = 49/84 (58.33%), Query Frame = 0
BLAST of HG10003601 vs. ExPASy TrEMBL
Match: A0A0Q3GGJ7 (RNase H domain-containing protein OS=Brachypodium distachyon OX=15368 GN=BRADI_2g53033v3 PE=4 SV=2) HSP 1 Score: 75.5 bits (184), Expect = 2.3e-10 Identity = 52/201 (25.87%), Postives = 78/201 (38.81%), Query Frame = 0
BLAST of HG10003601 vs. ExPASy TrEMBL
Match: A0A7H4L9Z4 (Genome assembly, chromosome: II OS=Triticum aestivum OX=4565 GN=CAMPLR22A2D_LOCUS20 PE=4 SV=1) HSP 1 Score: 75.5 bits (184), Expect = 2.3e-10 Identity = 37/93 (39.78%), Postives = 53/93 (56.99%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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