HG10003533 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10003533
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionGag-pol polyprotein
LocationChr08: 2919381 .. 2923793 (-)
RNA-Seq ExpressionHG10003533
SyntenyHG10003533
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGCGCGATTGCTTATGTCATGGTGTGCGATTGTTGACCTCATGGTGCGCGATCGCTGACCTCATGGTACGCAATCACTTATATTAAGGTGCACGATCGCTTATATGAGTGGTCATGGTGCGCGATTGCTTATATTAGGGTGTGATCGCTTCACATGCCGAAAGAGTCAATAGTAAACAAGTTTTTAGAAAGAAGTCAATCATAGAAAAATTTTTGCTTTTCGGGTCCTTTTAAATAATTTTCCAAAAGTAGGGTTGATTTCAAAATAATTTACAAAAATTGAGTTCTCCAAAAATTATTTACAAAATTAAGGGTGTTTTTTTTTTTTTTTGTCTTTATTAGATTCAGTCCTTGAAAATATTGAATAGGCTAGAATTCAGATTGAAACGCTGCAAAATCAACTCAGCACACACCAACTCAGTCAATTTTATTTTTCTTTCTTTCTTAAACAATCAAAATTATTATTTTAATTTTAACTTAAAAAATTATCAACCCACCATCTCTCTAATTCTCTCAAACTCTCTCAAATTTCTCCTTAATTCTCCTAGACTTTCAAATTTCTCCTTAATCCTGTTTTTTTTCTTCTTTCTTTCTTAAATAATCAAATTATTATTTCAATTTTAACTTAACAAATTATCGACTCACTATTTTACCCCTCCAATTCTCCCTAATTCTTTCAATCTCCCTCAAATTTATCCTTAATTCTCTCAAACTCTCTCAAATTTCTCCTTAATCCTCCATTATTTTTCTTTCTTTCTTTCTTAAACAATCAAATTATTTCAATTTTAACTTAAAAGTTCTCGACTCACCATAACTGTTTAGTTGACCAATTTTATTTGTGTTGTTTATAATTCATGTTTTTCCAAATTAATCTCAGATGAAATTATTATTGTGTTGTGTTTGGCAAATATTTTTCTTTTATATTTTTTGAATATTACGTCGTTGACTTTGGGCATATTCCGTGGGTGGATATGTTTCCTTTTGAGTTTGATATTTTTCTTTCCTTATATGGTGCATATTTCGAGTGCCTTTGTGTAGTCGTTAGGTTATATTTTTTGGATGACTTGTAACAGATAAGCGGGTGTGCAAGAACGCGAACAAAAAAAAGAAAAAGTTTGTACCCGTTGGGATGAACACATATGAAGAAATCTGTGTAAAAGTATGTTGCTAGTGCATTTTGAACTACTTGTGCAATCTCGACAGAAGTTACTATGAGTTACTGGTTGAGGGTGAACTCAATGAGTAGGTGAATAGAAGGTGAATTTGTTGCAAGGTGCATTAGTTTCAAGGGGAGCTTGAGATTGCAGACTCATTGTCAGCAGTATCAAAGTTAGGGGGAGCCTAACCTGCTCGCTAGAATTCGATTCTATGGAAACTGAGTTTATAAAGTCTTAGTCGAAGTGTACTTTGTAAAACGAAGATTTATTCTAGTGGATTTCTTTTCACCTAAGCGCTAAATCTCCCAGACGTAGGTGGTGATTCATCGAACTGGGTTAATATACCTGTGTTTTATTTTCTTATTACCTGTCGTTTTTATTTTTGTTTTTTGTCAGTGACCTCTAGTCTGTCTAATGTCCTTCTTGAGTGGATCCAATATTTCATTTAGTATCAGAGCGGGTTGACTGCTCAACCATTAAGTCATCAATGGAGTCGATCAAGAAAGGTCGATCTACAACTCGGCCTCCTGTTCTAGATGGGTCAAACTACTCGTATTGGAAGGCTCGTATGGTAGCTTTATTAAAATCTATTGACAGCAAGTCATGGAAGGCAGTTATTCATCAATGGTCACACCCCACTGTTACTAACAAAAATGGTGTAGTAAGTCTGATAGCACCGTAAAAGTACCTCTGCTTAGTTCGAGTTTGTTACTTGGTTTTACATGTTTAAATAATTATTTTGTAGGTTTCGAGCAATTGAGAGGTAGAGCCGAGTGTTAGAGCTGAAATGACGCTAAAATGGGTCAAAACAGAGCTCGATTGCATCAACTGGGAAAGGGAGAAGCAAAATGAAGCCACGGCACTGCGACGCTCCCTAGGCGCCATCACATCGCTCTTTCCCGAGAGTGAGAATCTGGAAAAAGGCCTAGGCGTCGAGGCGATACGAACCCATTCCGCGAGAAAATTTCGTCAGCCTTGCGGCGCTGTACCCTAGCACCGTAATGCCAATTCGTTTTTTTATAAATTCTAAGTTCTGCCACCGAGCCATCCTCTCCCACCCCCAACTTAGGAGGACGCCACCAGCCGCTCCAACTTCGACTTCTCTCTACTTTTCTTTATCTTTGTGGTCTGTTCTTGTATGGAAACAATTCCTCATTGATCAGTATGTTGATAATGGGCTAAGGTACTTGATTTCTAGCTTGGGTTTCTAGGTTTTTTTTCGATTATTTCATGTATTTGTCAGATTTTGAATTGGAATTTATATTGAATTGTTGGTTTTAATTCCGTTTTAAATAGATTTAGATCATATTATCATACTCTTGAGGATTGTATGATGTTTCTTTTGATTAATATACGATTCGTGAAAATTGTTGTATATTAATTCATAAGAAGCCATAAGTTAGATTGGCTTGCAAATTAATCTAGGTTAGTATTAATCCAATCAACTTAGAATTGAATTAATAAATATTTAATCAAGGCTTTTCCTGTTGAATATTCCCCTAACATTCGAATGGAATTTGCATGCTTTTAATCTCATTTGAATTGGTTTCATTAGTTAGTAAGGACAATTTAATTGACTTTTCCGATTAAGTTAGTTTTTATTGGGGCGAATCAATTGGCTTCTCCAATTAAGTTGGTTAGAGTAAGCAATCGTTTAATTCCAGTAATGAGATATTGATGAGAATAAGGAATTTCGTTTAACCGAAGTTAGATTTTTTTAATATTGAATTTCAACCCCTTTTATTGTCTGCTTTTATTTATTTTATGCATTTTAAATTATTAGCAAACAAACAACTTCAACCCCCCTGGTTGCCTTGAGTTGTAAACCATTTAATTAAGAAAAATCTATGTGCTCCCTGTGTTCGACCCGTGCTACCACTACTACATTTTAGTGGATATGGTTAAATTATCTAGTCTGGAATTGGGTGACGAATTCCGTGCGACCAAAGTCTTAAACCTAAAAAGGATTGGATTGAAGTTGAAGATCAAACATCTCTAACAAACTCTCGGGCTCTAAACGTTATCTTTAATGGAGGTGATCGTAACATTTTTAGATTGATTAATACGTGTGTCTCAGCTAAAGAAGCCTTGATATTCTAGTAGTGGCTCATGAAGGACCTCGAAGGTAAAAATATCTAGGTTGCAACTTTTAACAACTAAATCCGAATCTCTGAAAATGCACGATGACGAGACTGTTGCTGAATTCAATGTGTGTCTTCTAGATATTGCTAATGAGTCTTTTGCTCTCATAGAAAATATTTCTAAGTTCATAAAGTCTTGCGATATTTACCCAAAAGATTTGATATGAAAGTCACTTCAATTGAAGAAGCTCAAAATATTACCACAATGAAAGTTGATGAACTATTCGGGAGTCTTCGAACATTTGAGATGAATTTGATAACAAAACCGATAAGAAGCCTAAAGATATAGCTCTGCAATCCTCCATTAGTGAGGACTCGATGTCCCAGATCAAAGACACTAATGAAAATCTTATTGAATAATCCATATCTCTTATAGCCAAATAGTTTGGAAGAGCTCTCAGACGATGGAAAAAAATATTTTAGCCCCCGAGGGAATTATGCTGCTCCACATGTTAAGGACTTGAGTAATGACATCTCTTACCAAAACTAAAAACTCCCAAAAAAGGCTGCAAGTGAACTGAAAATGATAAAAAAAAAAAGCAATGGTGGACAAGGTGTCAGAGAATGATCATTCAGATGTCATGGGTGTTAGGAATTTGGACATTCTCAAGCTAAATGTCCAAATTTTCTAAAAAGAAAAGAGAAAGGATACGCAACTACTCTCTCAGATGATGAATCAGAAGTGAGCAGTGAATTAGAGGATGAAGTGAAAGCTTTAATGGGGAGTCTGTCCCTTGAGTGCACTATTTAGGACAAAGTGCTTTGTAATGATGATGCCACTAAGATACATATGTGTGATCAGATTTTAGCATATCATGGAACTCTATCATATGATGAAATCCATCAACTGTCGTTAGAGAACTCAAAAAACTCTGACTGTCTAGAAAGAGAAGATTGAGAAACTTATTGAAGACAATTATCGCTTGATGAGTACCATTTTAGAGCTGAAGAAAGAATTGCAAGAGGCTAAAGTTGATCTTGACAGTTTATCCAAATCTGTTCGAATGCTGAACTCTGGAACAGATGATCTTGATAAGATTCTGTCATCAGGAAAGAAAATGTCTGATAAGAAAGGAATCCGTTTTGAAAATTCGGGAAAACAGTGGCACTAA

mRNA sequence

ATGGTGCGCGATTGCTTATGTCATGGTGTGCGATTGTTGACCTCATGGTGCGCGATCGCTGACCTCATGAAAGAGAAGATTGAGAAACTTATTGAAGACAATTATCGCTTGATGAGTACCATTTTAGAGCTGAAGAAAGAATTGCAAGAGGCTAAAGTTGATCTTGACAGTTTATCCAAATCTGTTCGAATGCTGAACTCTGGAACAGATGATCTTGATAAGATTCTGTCATCAGGAAAGAAAATGTCTGATAAGAAAGGAATCCGTTTTGAAAATTCGGGAAAACAGTGGCACTAA

Coding sequence (CDS)

ATGGTGCGCGATTGCTTATGTCATGGTGTGCGATTGTTGACCTCATGGTGCGCGATCGCTGACCTCATGAAAGAGAAGATTGAGAAACTTATTGAAGACAATTATCGCTTGATGAGTACCATTTTAGAGCTGAAGAAAGAATTGCAAGAGGCTAAAGTTGATCTTGACAGTTTATCCAAATCTGTTCGAATGCTGAACTCTGGAACAGATGATCTTGATAAGATTCTGTCATCAGGAAAGAAAATGTCTGATAAGAAAGGAATCCGTTTTGAAAATTCGGGAAAACAGTGGCACTAA

Protein sequence

MVRDCLCHGVRLLTSWCAIADLMKEKIEKLIEDNYRLMSTILELKKELQEAKVDLDSLSKSVRMLNSGTDDLDKILSSGKKMSDKKGIRFENSGKQWH
Homology
[Close]
BLAST of HG10003533 vs. NCBI nr
Match: KAA0025487.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 1.3e-07
Identity = 36/72 (50.00%), Postives = 52/72 (72.22%), Query Frame = 0 

Query: 22  LMKEKIEKLIEDNYRLMSTILELKKELQEAKVDLDSLSKSVRMLNSGTDDLDKILSSGKK 81
           + KE+I+ L+E+N RLMS I  LK +L+E + D D + K V+MLNSGT++LD IL+SG+ 
Sbjct: 201 IQKERIQDLMEENERLMSVISSLKLKLKEVQKDYDQMIKFVKMLNSGTENLDLILNSGQT 260

Query: 82  MSDKKGIRFENS 94
            S K G+ F+ S
Sbjct: 261 SSSKYGLGFDAS 272

[Close]
BLAST of HG10003533 vs. NCBI nr
Match: TYK00378.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 1.3e-07
Identity = 36/72 (50.00%), Postives = 52/72 (72.22%), Query Frame = 0 

Query: 22  LMKEKIEKLIEDNYRLMSTILELKKELQEAKVDLDSLSKSVRMLNSGTDDLDKILSSGKK 81
           + KE+I+ L+E+N RLMS I  LK +L+E + D D + K V+MLNSGT++LD IL+SG+ 
Sbjct: 201 IQKERIQDLMEENERLMSVISSLKLKLKEVQKDYDQMIKFVKMLNSGTENLDLILNSGQT 260

Query: 82  MSDKKGIRFENS 94
            S K G+ F+ S
Sbjct: 261 SSSKYGLGFDAS 272

[Close]
BLAST of HG10003533 vs. NCBI nr
Match: KAA0041441.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK24315.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 3.9e-07
Identity = 35/72 (48.61%), Postives = 51/72 (70.83%), Query Frame = 0 

Query: 22  LMKEKIEKLIEDNYRLMSTILELKKELQEAKVDLDSLSKSVRMLNSGTDDLDKILSSGKK 81
           + KE+I+ L+E+N RLM  I  LK +L+E + + D   KS++MLNSGTD+LD IL+SG+ 
Sbjct: 282 IQKERIQDLMEENERLMGVISSLKVKLKEVQNEYDQTIKSLKMLNSGTDNLDSILNSGQN 341

Query: 82  MSDKKGIRFENS 94
            S K G+ F+ S
Sbjct: 342 GSSKYGLGFDAS 353

[Close]
BLAST of HG10003533 vs. NCBI nr
Match: KAA0060361.1 (gag-pol polyprotein, related [Cucumis melo var. makuwa] >TYK22104.1 gag-pol polyprotein, related [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 3.9e-07
Identity = 36/74 (48.65%), Postives = 49/74 (66.22%), Query Frame = 0 

Query: 17  CAIADLMKEKIEKLIEDNYRLMSTILELKKELQEAKVDLDSLSKSVRMLNSGTDDLDKIL 76
           C   ++ KEKI+ LIE+N R MS I  LK +L+E + + D + KSV+MLNSGT++L  IL
Sbjct: 240 CEAREIQKEKIQDLIEENERFMSVISSLKLKLREVQNENDQILKSVKMLNSGTENLYSIL 299

Query: 77  SSGKKMSDKKGIRF 91
            SG   S K G+ F
Sbjct: 300 KSGHNGSHKHGLGF 313

[Close]
BLAST of HG10003533 vs. NCBI nr
Match: TYK01584.1 (putative envelope-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 5.1e-07
Identity = 37/72 (51.39%), Postives = 50/72 (69.44%), Query Frame = 0 

Query: 19  IADLMKEKIEKLIEDNYRLMSTILELKKELQEAKVDLDSLSKSVRMLNSGTDDLDKILSS 78
           + +  +EKI  L ++N RLM  I ELK EL+ AK + D+L+KSVRML+ GT  LD+ILS 
Sbjct: 107 VLNQQQEKIMILTKENLRLMEKISELKDELKNAKKEYDTLNKSVRMLSLGTSTLDEILSK 166

Query: 79  GKKMSDKKGIRF 91
            K  +DKKGI +
Sbjct: 167 EKVKNDKKGIGY 178

[Close]
BLAST of HG10003533 vs. ExPASy TrEMBL
Match: A0A5A7SLA0 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold417G00920 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 6.5e-08
Identity = 36/72 (50.00%), Postives = 52/72 (72.22%), Query Frame = 0 

Query: 22  LMKEKIEKLIEDNYRLMSTILELKKELQEAKVDLDSLSKSVRMLNSGTDDLDKILSSGKK 81
           + KE+I+ L+E+N RLMS I  LK +L+E + D D + K V+MLNSGT++LD IL+SG+ 
Sbjct: 201 IQKERIQDLMEENERLMSVISSLKLKLKEVQKDYDQMIKFVKMLNSGTENLDLILNSGQT 260

Query: 82  MSDKKGIRFENS 94
            S K G+ F+ S
Sbjct: 261 SSSKYGLGFDAS 272

[Close]
BLAST of HG10003533 vs. ExPASy TrEMBL
Match: A0A5D3BMP7 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00440 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 6.5e-08
Identity = 36/72 (50.00%), Postives = 52/72 (72.22%), Query Frame = 0 

Query: 22  LMKEKIEKLIEDNYRLMSTILELKKELQEAKVDLDSLSKSVRMLNSGTDDLDKILSSGKK 81
           + KE+I+ L+E+N RLMS I  LK +L+E + D D + K V+MLNSGT++LD IL+SG+ 
Sbjct: 201 IQKERIQDLMEENERLMSVISSLKLKLKEVQKDYDQMIKFVKMLNSGTENLDLILNSGQT 260

Query: 82  MSDKKGIRFENS 94
            S K G+ F+ S
Sbjct: 261 SSSKYGLGFDAS 272

[Close]
BLAST of HG10003533 vs. ExPASy TrEMBL
Match: A0A5A7TIF9 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00860 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.9e-07
Identity = 35/72 (48.61%), Postives = 51/72 (70.83%), Query Frame = 0 

Query: 22  LMKEKIEKLIEDNYRLMSTILELKKELQEAKVDLDSLSKSVRMLNSGTDDLDKILSSGKK 81
           + KE+I+ L+E+N RLM  I  LK +L+E + + D   KS++MLNSGTD+LD IL+SG+ 
Sbjct: 282 IQKERIQDLMEENERLMGVISSLKVKLKEVQNEYDQTIKSLKMLNSGTDNLDSILNSGQN 341

Query: 82  MSDKKGIRFENS 94
            S K G+ F+ S
Sbjct: 342 GSSKYGLGFDAS 353

[Close]
BLAST of HG10003533 vs. ExPASy TrEMBL
Match: A0A5A7V3Q5 (Gag-pol polyprotein, related OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G00970 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.9e-07
Identity = 36/74 (48.65%), Postives = 49/74 (66.22%), Query Frame = 0 

Query: 17  CAIADLMKEKIEKLIEDNYRLMSTILELKKELQEAKVDLDSLSKSVRMLNSGTDDLDKIL 76
           C   ++ KEKI+ LIE+N R MS I  LK +L+E + + D + KSV+MLNSGT++L  IL
Sbjct: 240 CEAREIQKEKIQDLIEENERFMSVISSLKLKLREVQNENDQILKSVKMLNSGTENLYSIL 299

Query: 77  SSGKKMSDKKGIRF 91
            SG   S K G+ F
Sbjct: 300 KSGHNGSHKHGLGF 313

[Close]
BLAST of HG10003533 vs. ExPASy TrEMBL
Match: A0A5D3C964 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold654G00590 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.5e-07
Identity = 35/72 (48.61%), Postives = 51/72 (70.83%), Query Frame = 0 

Query: 22  LMKEKIEKLIEDNYRLMSTILELKKELQEAKVDLDSLSKSVRMLNSGTDDLDKILSSGKK 81
           + KE+I+ L+++N RLMS I  LK +L+E + D D   KSV+MLNSGT++LD IL SG+ 
Sbjct: 69  IQKERIQDLMKENERLMSIISSLKLKLKEVQNDYDQTIKSVKMLNSGTENLDSILKSGQN 128

Query: 82  MSDKKGIRFENS 94
            S + G+ F+ S
Sbjct: 129 SSHRYGLGFDAS 140

The following BLAST results are available for this feature:
BLAST of HG10003533 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0025487.11.3e-0750.00gag-pol polyprotein [Cucumis melo var. makuwa][more]
TYK00378.11.3e-0750.00gag-pol polyprotein [Cucumis melo var. makuwa][more]
KAA0041441.13.9e-0748.61gag-pol polyprotein [Cucumis melo var. makuwa] >TYK24315.1 gag-pol polyprotein [... [more]
KAA0060361.13.9e-0748.65gag-pol polyprotein, related [Cucumis melo var. makuwa] >TYK22104.1 gag-pol poly... [more]
TYK01584.15.1e-0751.39putative envelope-like protein [Cucumis melo var. makuwa][more]
BLAST of HG10003533 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10003533 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SLA06.5e-0850.00Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold417G... [more]
A0A5D3BMP76.5e-0850.00Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112... [more]
A0A5A7TIF91.9e-0748.61Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G... [more]
A0A5A7V3Q51.9e-0748.65Gag-pol polyprotein, related OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A5D3C9642.5e-0748.61Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
BLAST of HG10003533 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 41..61
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..92
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..98

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10003533.1HG10003533.1mRNA