HG10003489 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10003489
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Calcium-binding EF-hand family protein
Location	Chr08: 2191816 .. 2192010 (-)
RNA-Seq Expression	HG10003489
Synteny	HG10003489

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATTCTCTTGGCAGCAACCCCAGTCAAGCCCAATTCAAAGCCATTATCGCCGAGGAGAATCTCACTGCTCCTTTTGATTTCAATCGCTTTTTTGAAATAATGTCTAAGCATATGAAGCCTGAGCCCTTCGAATGGTGGCCAATTGAAGAGGGAACTAATGGAAAATCGGTTTTCTGTGCTTTACTGGAATGA

mRNA sequence

ATGCATTCTCTTGGCAGCAACCCCAGTCAAGCCCAATTCAAAGCCATTATCGCCGAGGAGAATCTCACTGCTCCTTTTGATTTCAATCGCTTTTTTGAAATAATGTCTAAGCATATGAAGCCTGAGCCCTTCGAATGGTGGCCAATTGAAGAGGGAACTAATGGAAAATCGGTTTTCTGTGCTTTACTGGAATGA

Coding sequence (CDS)

ATGCATTCTCTTGGCAGCAACCCCAGTCAAGCCCAATTCAAAGCCATTATCGCCGAGGAGAATCTCACTGCTCCTTTTGATTTCAATCGCTTTTTTGAAATAATGTCTAAGCATATGAAGCCTGAGCCCTTCGAATGGTGGCCAATTGAAGAGGGAACTAATGGAAAATCGGTTTTCTGTGCTTTACTGGAATGA

Protein sequence

MHSLGSNPSQAQFKAIIAEENLTAPFDFNRFFEIMSKHMKPEPFEWWPIEEGTNGKSVFCALLE

Homology

[Close]

BLAST of HG10003489 vs. NCBI nr
Match: XP_038876882.1 (probable calcium-binding protein CML13 [Benincasa hispida])

HSP 1 Score: 84.7 bits (208), Expect = 3.1e-13
Identity = 39/45 (86.67%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 1  MHSLGSNPSQAQFKAIIAEENLTAPFDFNRFFEIMSKHMKPEPFE 46
          M SLG NP+QAQ KAIIAEENLTAPFDFNRF EIMSKHMKPEPF+
Sbjct: 37 MRSLGGNPTQAQLKAIIAEENLTAPFDFNRFLEIMSKHMKPEPFD 81

[Close]

BLAST of HG10003489 vs. NCBI nr
Match: XP_008448907.1 (PREDICTED: probable calcium-binding protein CML13 [Cucumis melo] >QNH87118.1 CML13 [Cucumis melo subsp. melo] >TYK19478.1 putative calcium-binding protein CML13 [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 1.5e-12
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 1  MHSLGSNPSQAQFKAIIAEENLTAPFDFNRFFEIMSKHMKPEPFE 46
          M SLG NP+QAQ KAIIAEENLT+PFDFNRF +IMSKHMKPEPF+
Sbjct: 37 MRSLGGNPTQAQLKAIIAEENLTSPFDFNRFLDIMSKHMKPEPFD 81

[Close]

BLAST of HG10003489 vs. NCBI nr
Match: XP_004147942.1 (probable calcium-binding protein CML13 [Cucumis sativus] >KGN55913.1 hypothetical protein Csa_011609 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 1.5e-12
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 1  MHSLGSNPSQAQFKAIIAEENLTAPFDFNRFFEIMSKHMKPEPFE 46
          M SLG NP+QAQ KAIIAEENLT+PFDFNRF +IMSKHMKPEPF+
Sbjct: 37 MRSLGGNPTQAQLKAIIAEENLTSPFDFNRFLDIMSKHMKPEPFD 81

[Close]

BLAST of HG10003489 vs. NCBI nr
Match: XP_023540891.1 (probable calcium-binding protein CML13 [Cucurbita pepo subsp. pepo] >KAG6596839.1 putative calcium-binding protein CML13, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028366.1 putative calcium-binding protein CML13, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 81.6 bits (200), Expect = 2.6e-12
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1  MHSLGSNPSQAQFKAIIAEENLTAPFDFNRFFEIMSKHMKPEPFE 46
          M SLG NP+QAQ KAIIAEENLTAPFDFNRF EIMSKHMKPE F+
Sbjct: 37 MRSLGGNPTQAQLKAIIAEENLTAPFDFNRFLEIMSKHMKPESFD 81

[Close]

BLAST of HG10003489 vs. NCBI nr
Match: XP_022923443.1 (probable calcium-binding protein CML13 [Cucurbita moschata] >XP_022923444.1 probable calcium-binding protein CML13 [Cucurbita moschata] >XP_023553502.1 probable calcium-binding protein CML13 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 81.3 bits (199), Expect = 3.4e-12
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1  MHSLGSNPSQAQFKAIIAEENLTAPFDFNRFFEIMSKHMKPEPFE 46
          M SLG NP+QAQ KAIIAEENLTAPFDFNRF EIMSKHMK EPF+
Sbjct: 37 MRSLGGNPTQAQLKAIIAEENLTAPFDFNRFLEIMSKHMKHEPFD 81

[Close]

BLAST of HG10003489 vs. ExPASy Swiss-Prot
Match: Q94AZ4 (Probable calcium-binding protein CML13 OS=Arabidopsis thaliana OX=3702 GN=CML13 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.6e-12
Identity = 30/45 (66.67%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 1  MHSLGSNPSQAQFKAIIAEENLTAPFDFNRFFEIMSKHMKPEPFE 46
          M SLG NP+QAQ K+IIA ENL++PFDFNRF ++M+KH+K EPF+
Sbjct: 38 MRSLGGNPTQAQLKSIIASENLSSPFDFNRFLDLMAKHLKTEPFD 82

[Close]

BLAST of HG10003489 vs. ExPASy Swiss-Prot
Match: Q8VZ50 (Probable calcium-binding protein CML14 OS=Arabidopsis thaliana OX=3702 GN=CML14 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 6.7e-11
Identity = 27/45 (60.00%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 1  MHSLGSNPSQAQFKAIIAEENLTAPFDFNRFFEIMSKHMKPEPFE 46
          M SLG NP+++Q K+II  ENL++PFDFNRF ++M+KH+K EPF+
Sbjct: 38 MRSLGGNPTESQLKSIITTENLSSPFDFNRFLDLMAKHLKTEPFD 82

[Close]

BLAST of HG10003489 vs. ExPASy Swiss-Prot
Match: Q84VG0 (Probable calcium-binding protein CML7 OS=Oryza sativa subsp. japonica OX=39947 GN=CML7 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.7e-10
Identity = 27/45 (60.00%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 1  MHSLGSNPSQAQFKAIIAEENLTAPFDFNRFFEIMSKHMKPEPFE 46
          M SLG NP+QAQ + I A+E LTAPFDF RF ++M  H++PEPF+
Sbjct: 38 MRSLGGNPTQAQLRDIAAQEKLTAPFDFPRFLDLMRAHLRPEPFD 82

[Close]

BLAST of HG10003489 vs. ExPASy TrEMBL
Match: A0A5D3D7C6 (Putative calcium-binding protein CML13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G001330 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.5e-13
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 1  MHSLGSNPSQAQFKAIIAEENLTAPFDFNRFFEIMSKHMKPEPFE 46
          M SLG NP+QAQ KAIIAEENLT+PFDFNRF +IMSKHMKPEPF+
Sbjct: 37 MRSLGGNPTQAQLKAIIAEENLTSPFDFNRFLDIMSKHMKPEPFD 81

[Close]

BLAST of HG10003489 vs. ExPASy TrEMBL
Match: A0A7G7Y0U3 (CML13 OS=Cucumis melo subsp. melo OX=412675 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.5e-13
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 1  MHSLGSNPSQAQFKAIIAEENLTAPFDFNRFFEIMSKHMKPEPFE 46
          M SLG NP+QAQ KAIIAEENLT+PFDFNRF +IMSKHMKPEPF+
Sbjct: 37 MRSLGGNPTQAQLKAIIAEENLTSPFDFNRFLDIMSKHMKPEPFD 81

[Close]

BLAST of HG10003489 vs. ExPASy TrEMBL
Match: A0A0A0L2F2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G036390 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.5e-13
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 1  MHSLGSNPSQAQFKAIIAEENLTAPFDFNRFFEIMSKHMKPEPFE 46
          M SLG NP+QAQ KAIIAEENLT+PFDFNRF +IMSKHMKPEPF+
Sbjct: 37 MRSLGGNPTQAQLKAIIAEENLTSPFDFNRFLDIMSKHMKPEPFD 81

[Close]

BLAST of HG10003489 vs. ExPASy TrEMBL
Match: A0A1S3BLQ3 (probable calcium-binding protein CML13 OS=Cucumis melo OX=3656 GN=LOC103490931 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.5e-13
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 1  MHSLGSNPSQAQFKAIIAEENLTAPFDFNRFFEIMSKHMKPEPFE 46
          M SLG NP+QAQ KAIIAEENLT+PFDFNRF +IMSKHMKPEPF+
Sbjct: 37 MRSLGGNPTQAQLKAIIAEENLTSPFDFNRFLDIMSKHMKPEPFD 81

[Close]

BLAST of HG10003489 vs. ExPASy TrEMBL
Match: A0A6J1E9N4 (probable calcium-binding protein CML13 OS=Cucurbita moschata OX=3662 GN=LOC111431138 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.7e-12
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1  MHSLGSNPSQAQFKAIIAEENLTAPFDFNRFFEIMSKHMKPEPFE 46
          M SLG NP+QAQ KAIIAEENLTAPFDFNRF EIMSKHMK EPF+
Sbjct: 37 MRSLGGNPTQAQLKAIIAEENLTAPFDFNRFLEIMSKHMKHEPFD 81

[Close]

BLAST of HG10003489 vs. TAIR 10
Match: AT1G12310.1 (Calcium-binding EF-hand family protein )

HSP 1 Score: 71.6 bits (174), Expect = 2.5e-13
Identity = 30/45 (66.67%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 1  MHSLGSNPSQAQFKAIIAEENLTAPFDFNRFFEIMSKHMKPEPFE 46
          M SLG NP+QAQ K+IIA ENL++PFDFNRF ++M+KH+K EPF+
Sbjct: 38 MRSLGGNPTQAQLKSIIASENLSSPFDFNRFLDLMAKHLKTEPFD 82

[Close]

BLAST of HG10003489 vs. TAIR 10
Match: AT1G62820.1 (Calcium-binding EF-hand family protein )

HSP 1 Score: 67.4 bits (163), Expect = 4.8e-12
Identity = 27/45 (60.00%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 1  MHSLGSNPSQAQFKAIIAEENLTAPFDFNRFFEIMSKHMKPEPFE 46
          M SLG NP+++Q K+II  ENL++PFDFNRF ++M+KH+K EPF+
Sbjct: 38 MRSLGGNPTESQLKSIITTENLSSPFDFNRFLDLMAKHLKTEPFD 82

The following BLAST results are available for this feature:

BLAST of HG10003489 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038876882.1	3.1e-13	86.67	probable calcium-binding protein CML13 [Benincasa hispida]	[more]
XP_008448907.1	1.5e-12	82.22	PREDICTED: probable calcium-binding protein CML13 [Cucumis melo] >QNH87118.1 CML...	[more]
XP_004147942.1	1.5e-12	82.22	probable calcium-binding protein CML13 [Cucumis sativus] >KGN55913.1 hypothetica...	[more]
XP_023540891.1	2.6e-12	84.44	probable calcium-binding protein CML13 [Cucurbita pepo subsp. pepo] >KAG6596839....	[more]
XP_022923443.1	3.4e-12	84.44	probable calcium-binding protein CML13 [Cucurbita moschata] >XP_022923444.1 prob...	[more]

BLAST of HG10003489 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94AZ4	3.6e-12	66.67	Probable calcium-binding protein CML13 OS=Arabidopsis thaliana OX=3702 GN=CML13 ...	[more]
Q8VZ50	6.7e-11	60.00	Probable calcium-binding protein CML14 OS=Arabidopsis thaliana OX=3702 GN=CML14 ...	[more]
Q84VG0	5.7e-10	60.00	Probable calcium-binding protein CML7 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]

BLAST of HG10003489 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D7C6	7.5e-13	82.22	Putative calcium-binding protein CML13 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A7G7Y0U3	7.5e-13	82.22	CML13 OS=Cucumis melo subsp. melo OX=412675 PE=2 SV=1	[more]
A0A0A0L2F2	7.5e-13	82.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G036390 PE=4 SV=1	[more]
A0A1S3BLQ3	7.5e-13	82.22	probable calcium-binding protein CML13 OS=Cucumis melo OX=3656 GN=LOC103490931 P...	[more]
A0A6J1E9N4	1.7e-12	84.44	probable calcium-binding protein CML13 OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]

BLAST of HG10003489 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G12310.1	2.5e-13	66.67	Calcium-binding EF-hand family protein	[more]
AT1G62820.1	4.8e-12	60.00	Calcium-binding EF-hand family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23050	CALCIUM BINDING PROTEIN	coord: 1..45
None	No IPR available	PANTHER	PTHR23050:SF411	EF-HAND DOMAIN PAIR-RELATED	coord: 1..45

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10003489.1	HG10003489.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005509	calcium ion binding