HG10003488 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10003488
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Complex 1 LYR protein
Location	Chr08: 2182905 .. 2184011 (-)
RNA-Seq Expression	HG10003488
Synteny	HG10003488

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTCAGAAGCCTTCCAGGTAGCTAAGGTCTACCGCCAGCTTCTCAAAGCTGTAAAGAATCATATTGGAAAAGGAGAGAGCAAGAAGCATTTTGTGGATTATGTGGCTCAAAAGTTCAGGGATAAATCCATACTTTCAAAACCCCACTCTGTTCAACAGGAAATCAAGCTTGCTCGGGATTACACATTTCTACTGAACAGCGTGCATCATCAAAAGGCAATAATTCTTCACTCTCACTACTCTCCTTGAAATCAAGCCATGTCTTATGACCATTTGAATTTTAGCTTTTGGCTTCTAAAATTGCTCTTGTTTTTTTCACAGTTTCTTTACAATGATTTTCTTCTTTTGTAACTGATGTGATTTTAGTCAAATTCTAAAAACAAAAATAAGTATTTTCTTTAGTTTTCAAACTTGGCTTAGATTTTGAAACTACCCTAAAAAGTTGATAACAAAAATAAGAAACTCATAGGTGAAAATAGTGTTATAAGCTTAGTTTTAAAAAACCAAATGGTTATCAAATGGGGCATTAGTAATCCCGTGTTTGGTAATGTGATTCATTCATTATAATTTTCTTTCACAATGCAAATTAATATTTGTCGCCAATGAGGATTTGACAAACAATGACTTGTTAATAGCCTTAAATCATAATTTTCATTCATCTAAATAGGACATTTGTTATAGATAAAATTTCATTAGGTAACCTTTATCAATCAATTTTTAAAACTGCAATGCTAAATTGGTAGGCCAATTAGTTGCTTCTTAGGTTCCTACAATATGCAATAACAGAGTAATGAGATATTAGAATTCTAAGCTCTACTATATGCCTCTTACATTCTACTATATGTAAATCAATATGTAAGTCTTCTTAGGTTCTTTAGGCTACAAATTATAGCTCAGCTCAGCTCAGAATCAAGAAGAAACAAACTTTTTCTTCATTCCTCATTTGATCTTTGTTTATAATTGTAATTGACATTGGCTATGAATGCACAGGACTTGCTGTTCTCGTACAACATTGCTATTGATAGATCAGAGGAAATGAAGCGAATATTGGGCAAGTCTGCAGCAAGTGTGGGGCTTCAACTACCCGAGGCTTATCAACCCTGA

mRNA sequence

ATGAATTCAGAAGCCTTCCAGGTAGCTAAGGTCTACCGCCAGCTTCTCAAAGCTGTAAAGAATCATATTGGAAAAGGAGAGAGCAAGAAGCATTTTGTGGATTATGTGGCTCAAAAGTTCAGGGATAAATCCATACTTTCAAAACCCCACTCTGTTCAACAGGAAATCAAGCTTGCTCGGGATTACACATTTCTACTGAACAGCGACTTGCTGTTCTCGTACAACATTGCTATTGATAGATCAGAGGAAATGAAGCGAATATTGGGCAAGTCTGCAGCAAGTGTGGGGCTTCAACTACCCGAGGCTTATCAACCCTGA

Coding sequence (CDS)

ATGAATTCAGAAGCCTTCCAGGTAGCTAAGGTCTACCGCCAGCTTCTCAAAGCTGTAAAGAATCATATTGGAAAAGGAGAGAGCAAGAAGCATTTTGTGGATTATGTGGCTCAAAAGTTCAGGGATAAATCCATACTTTCAAAACCCCACTCTGTTCAACAGGAAATCAAGCTTGCTCGGGATTACACATTTCTACTGAACAGCGACTTGCTGTTCTCGTACAACATTGCTATTGATAGATCAGAGGAAATGAAGCGAATATTGGGCAAGTCTGCAGCAAGTGTGGGGCTTCAACTACCCGAGGCTTATCAACCCTGA

Protein sequence

MNSEAFQVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLARDYTFLLNSDLLFSYNIAIDRSEEMKRILGKSAASVGLQLPEAYQP

Homology

[Close]

BLAST of HG10003488 vs. NCBI nr
Match: XP_038889144.1 (uncharacterized protein LOC120079034 [Benincasa hispida])

HSP 1 Score: 186.8 bits (473), Expect = 9.5e-44
Identity = 98/110 (89.09%), Postives = 101/110 (91.82%), Query Frame = 0


Query: 1   MNSEAFQVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLAR 60
           MNSEA QVAKVYRQLLKAVKNHIGK ESKKHFVDYVAQKFRDK+ILSKPHSVQQEIKLA 
Sbjct: 1   MNSEALQVAKVYRQLLKAVKNHIGKEESKKHFVDYVAQKFRDKTILSKPHSVQQEIKLAL 60

Query: 61  DYTFLLNS-----DLLFSYNIAIDRSEEMKRILGKSAASVGLQLPEAYQP 106
           DYTFLLNS     DLLFSYNIA+DRSEEMKRILGKSAASVGL+LPE YQP
Sbjct: 61  DYTFLLNSVHHQKDLLFSYNIAVDRSEEMKRILGKSAASVGLKLPEPYQP 110

[Close]

BLAST of HG10003488 vs. NCBI nr
Match: XP_004144434.1 (uncharacterized protein LOC101204721 [Cucumis sativus] >XP_031739411.1 uncharacterized protein LOC101204721 [Cucumis sativus] >KGN58453.1 hypothetical protein Csa_001238 [Cucumis sativus])

HSP 1 Score: 186.0 bits (471), Expect = 1.6e-43
Identity = 95/110 (86.36%), Postives = 100/110 (90.91%), Query Frame = 0


Query: 1   MNSEAFQVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLAR 60
           MNSEA QVAKVYRQLLKAVK H+GK ESKKHFVDYVAQKFRDKSILSKPHS+QQEIKLAR
Sbjct: 1   MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLAR 60

Query: 61  DYTFLLNS-----DLLFSYNIAIDRSEEMKRILGKSAASVGLQLPEAYQP 106
           DYTFLLNS     DLLFSYNIA+DRS+EMKR+LGKSAASVGL LPE YQP
Sbjct: 61  DYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASVGLSLPEVYQP 110

[Close]

BLAST of HG10003488 vs. NCBI nr
Match: KAG7033478.1 (Extradiol ring-cleavage dioxygenase, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 184.9 bits (468), Expect = 3.6e-43
Identity = 94/103 (91.26%), Postives = 99/103 (96.12%), Query Frame = 0


Query: 1   MNSEAFQVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLAR 60
           MNSEA QVAKVYRQLLKAVKNHIGK E+KKHFVDYVAQKFR+KS LSKPHSVQQ+IKLAR
Sbjct: 1   MNSEALQVAKVYRQLLKAVKNHIGKEENKKHFVDYVAQKFREKSTLSKPHSVQQKIKLAR 60

Query: 61  DYTFLLNSDLLFSYNIAIDRSEEMKRILGKSAASVGLQLPEAY 104
           DYTFLLNSDLLFSYNIAIDRS+EMKRILGKSAASVGL+LPE Y
Sbjct: 61  DYTFLLNSDLLFSYNIAIDRSDEMKRILGKSAASVGLKLPEDY 103

[Close]

BLAST of HG10003488 vs. NCBI nr
Match: KAA0039302.1 (Complex1_LYR domain-containing protein [Cucumis melo var. makuwa] >TYK00486.1 Complex1_LYR domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 184.5 bits (467), Expect = 4.7e-43
Identity = 94/101 (93.07%), Postives = 96/101 (95.05%), Query Frame = 0


Query: 1   MNSEAFQVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLAR 60
           MNSEA QVAK YRQLLKAVK HIGK ESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLAR
Sbjct: 1   MNSEALQVAKAYRQLLKAVKKHIGKEESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLAR 60

Query: 61  DYTFLLNSDLLFSYNIAIDRSEEMKRILGKSAASVGLQLPE 102
           DYTFLLNSDLLFSYNIA+DRS+EMKRILGKSAASVGL LPE
Sbjct: 61  DYTFLLNSDLLFSYNIAVDRSDEMKRILGKSAASVGLSLPE 101

[Close]

BLAST of HG10003488 vs. NCBI nr
Match: XP_022967927.1 (uncharacterized protein LOC111467294 [Cucurbita maxima] >XP_022967928.1 uncharacterized protein LOC111467294 [Cucurbita maxima] >KAG6603158.1 hypothetical protein SDJN03_03767, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 184.1 bits (466), Expect = 6.2e-43
Identity = 96/110 (87.27%), Postives = 101/110 (91.82%), Query Frame = 0


Query: 1   MNSEAFQVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLAR 60
           MNSEA QVAKVYRQLLKAVKNHIGK E+KKHFVDYVAQKFR+KS LSKPHSVQQ+IKLAR
Sbjct: 1   MNSEALQVAKVYRQLLKAVKNHIGKEENKKHFVDYVAQKFREKSTLSKPHSVQQKIKLAR 60

Query: 61  DYTFLLNS-----DLLFSYNIAIDRSEEMKRILGKSAASVGLQLPEAYQP 106
           DYTFLLNS     DLLFSYNIAIDRS+EMKRILGKSAASVGL+LPE YQP
Sbjct: 61  DYTFLLNSVHHQKDLLFSYNIAIDRSDEMKRILGKSAASVGLKLPEVYQP 110

[Close]

BLAST of HG10003488 vs. ExPASy TrEMBL
Match: A0A0A0L9E2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G645910 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 7.9e-44
Identity = 95/110 (86.36%), Postives = 100/110 (90.91%), Query Frame = 0


Query: 1   MNSEAFQVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLAR 60
           MNSEA QVAKVYRQLLKAVK H+GK ESKKHFVDYVAQKFRDKSILSKPHS+QQEIKLAR
Sbjct: 1   MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLAR 60

Query: 61  DYTFLLNS-----DLLFSYNIAIDRSEEMKRILGKSAASVGLQLPEAYQP 106
           DYTFLLNS     DLLFSYNIA+DRS+EMKR+LGKSAASVGL LPE YQP
Sbjct: 61  DYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASVGLSLPEVYQP 110

[Close]

BLAST of HG10003488 vs. ExPASy TrEMBL
Match: A0A5D3BQE5 (Complex1_LYR domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00940 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.3e-43
Identity = 94/101 (93.07%), Postives = 96/101 (95.05%), Query Frame = 0


Query: 1   MNSEAFQVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLAR 60
           MNSEA QVAK YRQLLKAVK HIGK ESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLAR
Sbjct: 1   MNSEALQVAKAYRQLLKAVKKHIGKEESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLAR 60

Query: 61  DYTFLLNSDLLFSYNIAIDRSEEMKRILGKSAASVGLQLPE 102
           DYTFLLNSDLLFSYNIA+DRS+EMKRILGKSAASVGL LPE
Sbjct: 61  DYTFLLNSDLLFSYNIAVDRSDEMKRILGKSAASVGLSLPE 101

[Close]

BLAST of HG10003488 vs. ExPASy TrEMBL
Match: A0A6J1HS51 (uncharacterized protein LOC111467294 OS=Cucurbita maxima OX=3661 GN=LOC111467294 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 3.0e-43
Identity = 96/110 (87.27%), Postives = 101/110 (91.82%), Query Frame = 0


Query: 1   MNSEAFQVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLAR 60
           MNSEA QVAKVYRQLLKAVKNHIGK E+KKHFVDYVAQKFR+KS LSKPHSVQQ+IKLAR
Sbjct: 1   MNSEALQVAKVYRQLLKAVKNHIGKEENKKHFVDYVAQKFREKSTLSKPHSVQQKIKLAR 60

Query: 61  DYTFLLNS-----DLLFSYNIAIDRSEEMKRILGKSAASVGLQLPEAYQP 106
           DYTFLLNS     DLLFSYNIAIDRS+EMKRILGKSAASVGL+LPE YQP
Sbjct: 61  DYTFLLNSVHHQKDLLFSYNIAIDRSDEMKRILGKSAASVGLKLPEVYQP 110

[Close]

BLAST of HG10003488 vs. ExPASy TrEMBL
Match: A0A6J1EY92 (uncharacterized protein LOC111439884 OS=Cucurbita moschata OX=3662 GN=LOC111439884 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.5e-42
Identity = 95/110 (86.36%), Postives = 100/110 (90.91%), Query Frame = 0


Query: 1   MNSEAFQVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLAR 60
           MNSEA QVAKVYRQLLKAVK HIGK E+KKHFVDYVAQKFR+KS LSKPHSVQQ+IKLAR
Sbjct: 1   MNSEALQVAKVYRQLLKAVKKHIGKEENKKHFVDYVAQKFREKSTLSKPHSVQQKIKLAR 60

Query: 61  DYTFLLNS-----DLLFSYNIAIDRSEEMKRILGKSAASVGLQLPEAYQP 106
           DYTFLLNS     DLLFSYNIAIDRS+EMKRILGKSAASVGL+LPE YQP
Sbjct: 61  DYTFLLNSVHHQKDLLFSYNIAIDRSDEMKRILGKSAASVGLKLPEVYQP 110

[Close]

BLAST of HG10003488 vs. ExPASy TrEMBL
Match: A0A6J1C0V5 (uncharacterized protein LOC111006395 OS=Momordica charantia OX=3673 GN=LOC111006395 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 9.0e-40
Identity = 90/110 (81.82%), Postives = 99/110 (90.00%), Query Frame = 0


Query: 1   MNSEAFQVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLAR 60
           M+SEA QVA+VYR+LLKAVKNHIGK ESKKHFVDYVAQKFR++S LS+PHS+QQ+IKLA 
Sbjct: 1   MSSEALQVARVYRELLKAVKNHIGKEESKKHFVDYVAQKFRERSGLSEPHSLQQKIKLAH 60

Query: 61  DYTFLLNS-----DLLFSYNIAIDRSEEMKRILGKSAASVGLQLPEAYQP 106
           DY  LLNS     DLLFSYNIAIDRSEEMKRILGKSAASVGL+LPEAYQP
Sbjct: 61  DYALLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASVGLRLPEAYQP 110

[Close]

BLAST of HG10003488 vs. TAIR 10
Match: AT5G51960.1 (CONTAINS InterPro DOMAIN/s: Complex 1 LYR protein (InterPro:IPR008011); Has 45 Blast hits to 45 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 118.6 bits (296), Expect = 3.0e-27
Identity = 62/110 (56.36%), Postives = 80/110 (72.73%), Query Frame = 0


Query: 1   MNSEAFQVAKVYRQLLKAVKNHIGKGESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLAR 60
           M+ E    A+VYR LLKAV  H+GK + K HF+D+V Q+FR        ++  ++I LAR
Sbjct: 1   MSGEVVLAARVYRDLLKAVVKHVGKEDHKSHFLDFVKQEFR-------KNANSEKINLAR 60

Query: 61  DYTFLLNS-----DLLFSYNIAIDRSEEMKRILGKSAASVGLQLPEAYQP 106
           +YT+LLNS     DLLFSYNIA+DR+EEMKR+L KSAASVGL+LPE Y+P
Sbjct: 61  NYTYLLNSIHSHKDLLFSYNIAVDRTEEMKRVLNKSAASVGLRLPEVYEP 103

The following BLAST results are available for this feature:

BLAST of HG10003488 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889144.1	9.5e-44	89.09	uncharacterized protein LOC120079034 [Benincasa hispida]	[more]
XP_004144434.1	1.6e-43	86.36	uncharacterized protein LOC101204721 [Cucumis sativus] >XP_031739411.1 uncharact...	[more]
KAG7033478.1	3.6e-43	91.26	Extradiol ring-cleavage dioxygenase, partial [Cucurbita argyrosperma subsp. argy...	[more]
KAA0039302.1	4.7e-43	93.07	Complex1_LYR domain-containing protein [Cucumis melo var. makuwa] >TYK00486.1 Co...	[more]
XP_022967927.1	6.2e-43	87.27	uncharacterized protein LOC111467294 [Cucurbita maxima] >XP_022967928.1 uncharac...	[more]

BLAST of HG10003488 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10003488 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9E2	7.9e-44	86.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G645910 PE=4 SV=1	[more]
A0A5D3BQE5	2.3e-43	93.07	Complex1_LYR domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A6J1HS51	3.0e-43	87.27	uncharacterized protein LOC111467294 OS=Cucurbita maxima OX=3661 GN=LOC111467294...	[more]
A0A6J1EY92	1.5e-42	86.36	uncharacterized protein LOC111439884 OS=Cucurbita moschata OX=3662 GN=LOC1114398...	[more]
A0A6J1C0V5	9.0e-40	81.82	uncharacterized protein LOC111006395 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]

BLAST of HG10003488 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G51960.1	3.0e-27	56.36	CONTAINS InterPro DOMAIN/s: Complex 1 LYR protein (InterPro:IPR008011); Has 45 B...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF13233	Complex1_LYR_2	coord: 9..98 e-value: 4.4E-6 score: 27.3
None	No IPR available	PANTHER	PTHR35763	COMPLEX 1 LYR-LIKE PROTEIN	coord: 1..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10003488.1	HG10003488.1	mRNA