HG10003486 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10003486
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	RNA-binding protein 7-like
Location	Chr08: 2148796 .. 2157571 (+)
RNA-Seq Expression	HG10003486
Synteny	HG10003486

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGGAAGATCAAATGGATGCACCATTTACGTTGGTATGTTTGTTTTTATCTCTATCCATTTTAATTCATGTTTTCTGTATTCTAATTCGTTGAGCTCTTTCGTTTTCCTTTCTTGAGGATACTGTTTGCATTTTAAGCTTCATGTTTTTACTTCATTGAAGTTTCGTATGAAAATTATGCTTTTGGGTGGTTGGTTTTATAATAGTTGTGTTCATTTCTTTCTATTACGTTTTCCTATTGGACCTATATGACATATTTATTGGTTCTCTCACAAAGCTATGCTTAGATTTTTTATTGGCGAGTTTCATAATTGAACAAAAAGGATTGGGTTATTTGCTCGATTTCTTCCTCTTGTTTGATTTCTCTTTATAACATAATTGATTTGCTGCCTTTGCCCTTGGTGAAGAGGGTTGAAAGTTATCTTATTTTCTTTTTGCTTTTCATAGATCTCTTAGATTTTCTTCGTTTTTGCTTTAACTGGTACCATCTAAATTTTCACTTTCACCATCGTCTTCGATCTGCTTCAGTGTGGGCTTTACTCCATTTGAGTATTGCTGCCAGTTTGTCTGTAATATTTCTTCCCCTTTTATACTTTGATACTATATTATCTATTAAATTTTAAGGATGCAGCCTACTTGAATTTTAGTTGCCACATTTTCTTCTGAATTTGCTTTTGTTACTTAATCACTTTTTGTAGGTAATTTGGATGAAAGGGTAAGTGACAGGGTTCTCTATGACATTCTAATCCAAGCTGGGCGGGTAGTGGACTTACACATTCCTCGGGACAAGGAATCTGCCAAACCTAAGGGTTTTGCTTTTGCAGAATATGAAAGTGAAGAGATTGCCAACTATGCTGTTAAGCTTTTCTCTGGTCTCGTGAATCTTCATAATCGTACCTTGAAGTTTGCAGTATGTCATTTTATTTCTTTCTCAACCAAAAATTTTCATTTTATCTCCTTTTTTCTTGATGAGCTTTGTTTTCTAACTTATACATATATATATATATATATATATATATATATATATATATTTATATTTGCTTTATGATCCAGTATTCATGTCATACACCATCTCCTCTAATTTGACCCATTTTGATCAGTAACTCACATTTAGATTTATATAGAGTAGAGTCTATTAAAATGTGTGGTGCATTTGAAATTTCAGACCTTTTGTTTAATCTTAAAATTTAATGAACTTAATTAAAAGTCAATGATTAAAAAGTCTTGGCAGAATAGCATATGATTTGATTCTATACTAAAGTTTATATGTACTAAATATATATTTACTAATGAAGTAATCTTAGTAATAATTTAGAGTAGTACAAAAATTGTATTCCTTCATATGCCTTATGCAGTATATTGCATAACTTTTTTGAAGTTTTAGAAATTAGATTACATTCCAATTAGATCACTTTTTCTTGTTATCATAATAAATTGATGGGAATAACCTATATATCCATGGCTCGTGATAAATTTAATCTGGTTTAGTGTATATCACCAGAATTTCAAATGACTTGGTTAGAAAGCTTTTGGCTTTCCAATTTTAGAGGATGAACATGAACATTAGTACATTATTGAAAAACAAAAAGAAATGCAAAATATAATTTATTCACATCCCTACTCTAACGACTTGGTTGAAGAACAGAAAAAATTATCGAAGTTGGGAGAATGAAGGTAGATGCTTAAACCTGATTAGAAAAATGAAACAAGTCTAAATATATAATCTCATCTTTTTTATAGAATGATATCTATTAGTTTTCTAAAAAGTGATGTGTTTTCTGATTTTGTAAATAAATAAGAACAATATCAACAATGAAAAGTGAAACAGATATAAGGATTTCTTTTCCAATTATAGATGGACTGATATTATTGTATCAGCCTTGATTGTGTGGTGAGCTATTTTGTTATGGGAATGACACATTGTTATTGAAATTTTTGCAAACAGGTATCTGGGCAAGACAAGCCTTCACCAGGTAGCTATGCAATCACTTCATCATCAAATATATCCAATAAATCGCGGTCACAGATTGTTTCGAGTTACTCTAATGAAATATCTCAGCATTCCAATCGCTTTACTACATCATGTAAATTTACAACATATCCTGAGAACCATCTAGAAGGTGATTTTTCTTTATTTTTGTCTTTGCTTTGTTAGTTTGGTAAGAAATTGTGTATTTTTTTACTTTATTGGTCTTTCCCACATAGTTCAACAAACTTTTATTTCTTTTATTCAGAGCTACTTTACCCTGGTTTAGTTAACCAATATAATGGGTATGGATCACATTTGGATAACTACAATAAAGAATACAGTCAGAGGTATTCTGGGACAACTTTGGGTAGACTTAGCCAACCTAAATCACACCGCCATGATATGAATTTTCCAGTAGATTATCCTCCTTACGACCTTTTGAACTAATGCAGCCAGTGCCTTCCATTGTGGTTAATCTTAGGAATGACCTCTTAGATGGATGTAGAAGGTTTGATGGAAAATGATACCATATTTGCTATGGAGCATGCTCTTTATGTTATTGAATACATAGTCATTTTGTAGGTGTATGTGTTCATATGATTTGGCTGTGTTGTTATAAAAGTTGTAATCTATTTTATTAAATATTCAGATTTTATTTAATTCGTGTTTAATGTTATGGAATTATAAATGATAATTAATGTCATGGTGACTGAAAGGAATAGCTTTTGGTTTGTGTATATTTGAGTATTTACTTTTTTCTGAAGCGTTTTACTTGAGCCAATATATAAATATTATTAACATTTTGGTTTCAGTGAAGTGAAAGCTAAATTACATGTAAATCCAGGCATTTTGGTTTGAGTTTATTGCCATTTCCGCGTTTGGGTATGCATTGTACTGAAATTCTTGGTAGGTTAAACTGTAAGGTATTGTCTAACTTTGCCCACTAACTTTTTGTAAACATTTTAAAAGTAGATTACAAAGAAAATTCATTGATTGTCATCATTATCAGGCATAATTTTAAAAGCAGAAGAACAATTGTTACTACGGGTTACCATTTGTTTTTGTTTTGTACTTGTACTCTTATGGTTTTGAGACTTTTGATTCTTATATTTGAAAGCGAAATAAATGTATGGCATGCTTGAAATTTTCAAATTTACTTCTTTGAGGGAGATGCTGCTTTCTAGTCCTGAGAGTCTTTCATATTTTTGGGAGATAGTAGATAAAACATTTGCTGATCAGGATAGTGGCATGCCTGAGAGTCATTCATATTTTTAAAAACGTCAAGTGTACTGTTACTTGACATTGTAGCCATGTTGCGTAACTCAATTTTTATAGTAGTGGCAGTTCTCTTCCATAGGATCATTATAGGGTTTCTATCAAAATTAAGAATTTAGATACCTCCTTTCTCTCATCTGGGCTCAAAGTTCTTATTTGGAATTGTGAGTACAACATGAGTGATGAGTATTTGAACTTGAACCTTCGACTTCAAGAGAAGGAGTGAGTACATAATGATTACCTTGGAGCTATGCTCACTTTGGCAGTTCTATTTGGAGTTTCCCATTAGTTTTACTATTATTTGTGTCATAAAATGAATTTGTTGGTTTTCTTTTCTTTCGTTTGTTTGTATGTGTATGCTCAATGATCTATATTTGGCTGCCTTGTAAAGATTTGGAATGAATTGATGTGATCATAGTTTTAGTTAGCAAGTAGTGTTTTTATATGAAATCCTTTTGTATGGACAATAAAATCACTCTGTTTATAATCCAGCTTTAATGAACCCTGCTGAAGCTTTTTGATTTTGTGCAATCACGAAGAATTTGAATTAAAGGAGGTTCTATAATTGAGATCATTATAAGCATAGTTCATCATATAAAGGCCTAACCTAACAAAGCATCCAATATCAATATTAATAATCTGTGCCTGGAATGTGTTGTTAGATCTCTGCTCTATAAAGCTATGTAGACAACAACAAAGACAGTTTGACGGGGGCTTCCCTATCATTACTTCTTTCACGATAAGGGAATGGAGTCTGCATCAGTCGAAGTGGTGGAATGGCCTCTTGACTCAGAGAGAGCTTTTGCACCTCTTTCCAAGAGATGTGATTCGGTATCAGAATCGGCTGAAGGAGAGTGAAGCGGTGGCAACTCTCCTAACTCAGCCCATGTGGAATGGTTTCTTGTCCAAAGAAGACTACATGGATGTCATCTTCCATATAATTGTAATTAAAATTGTTTTTTCTTTTTTGTTAACAAACCGACTTCAACGGTAGCAACACGATGATTGCGCTTGTAGAAAATCTCGAGTTCATATTGGTCATAAGTATGTGTTCAAGAAGTTTGTCTAGACTGACGTTAGGCGTGACAATTTAATTCAAAATTACTCGAACCAAATATAAATATGATTGTATAAAAAACAAATGGACCTAAATATCTTTTTCTAAAATTACTATTTCAATGATCACCTACAAACATTTATTAAGAATTCAAGTTTTTCTTCCAGCAATGTAAGAACAATAGTATGAGATTTAAAAATAAAACAATATTTACAAATATACCAAAATGAGCCAAAATATTTATAAATATAACAAAATGTTATTATTTATAAGTTATATAGAGATAGACAAGATTTCTATAGTCTATTATTGTTTATCAGTTATAGACACTAATAGATGTCTATCAATGTCACGACATTTTATTATATTTAAAAATATTTTAAGTAATTTTATCATTTAAAATAATTACTTTAAAAATATAATTATTATTTTCAAAATTGGTACAGTTTGAATCAAATTAAAAAAGTTTTCATAACAAACATGAAACAAAATCAACGCTCTACAATTTTCTAAAAATAAAAAGAATAAATAGATAAATAAGGAAAAAACAATTAGAGGTCTATTAGCTGACTTCGCTGTAGTTTCTCTTTTATCCTTTCTCTTTCTTTTTGCTTTACGAAACTTCAGTTTAGGGTTTTGCTTTTCAACTTGTAGAACACTCATGTCAGGAAGATCAAATGGCTGCACCGTTTACGTAGGTATGTTCATTGATTTTTCTACCCTAATTCGTTTAACTTCTTCGTTTTCCTCTCATGAGAATTCTGCTGTTTGCGTTTTAAGCTTCATGTTTTTACTTCCGTGAAGTTCTGTTTGAAAATTATGCTTTCGGGTGGTCAATTTCATAAGAAGTGTGTTTATTTTCTTCTATCGTGTTCTACTATTTGATTTATAGGACATAAGACATATTTATTGATTGAAAAAGCCCTGCTTAGATTTTTGTTGGCGGGTTCATAATTGAACTGAAAGGATTGGCTTGTTTTTTGGATTTCTTCCTCCGCAACTTTTTCCCTTTCTTGTAAATGTGTTTGATTTCTGTTTATAGCATACTTGATTTGTTGCCTTTAGGTGAAAAGGGTTGGAAGTTAAACTTATTTCGTTTTTGTTTTTCTTAGATCTCTTTGATTATCTTCGTTTTTGCTTAACTGGTTCAATCTTAATTTTCACCTATTCCATTATCGTTTATTTGCTTCTGTGTAGGCTTTCTCCCATTTGAGTATTGATGCCAGTTTGTTTTTTAATATTTCTTTAACATAACTAGATGTTCAACGAACTTATTCTTTTTGGGGAACTTTTCGTCTTCCTTCATGGGTGATTTCATAAGTCAACTTCACCCACTCCAATATTGTTTACTATTGAAGTTTGCACATTTATTGAAGAACTTTATCTTCACAACTCTGTACCCCAAACACAGACTATACAACTCTAACATATTAACTTCAGACTTTAGACCTTAACTCGGCTCCCCAAACATCCCTTTAATTTTTTGATACCACATTATCTATTAAAGTGTTTAGGATGCAGCCTGTCATTTGAGTTTAAGATGCCACATTTTCTTATGAGTTGATTTTGTAACTTTCTTCACTTTCTGTAGGTAATTTGGATGAAAGGGTAAGTGATAGAGTTCTTTATGACATTTTAATCCAAGCTGGGCGGGTAGTGGACTTGCACATTCCTCGGGACAAGGAATCTGGCAAGTCCAAGGGTTTTGCTTTTGCAGTATATGAAAATGAGGAGATTACCAACTATGCTGTTAAGCTTTTCTCTGGTCTTGTGACTCTTCATAACCGTACCCTGAAGTTTGCAGTATGTAACTATTGTTTCTTTCTCAATGCAAATTCTTTATGATCCCCTTTGTCTCTCTTATCTTTGTTTCCTAACTTATTCATATATTGTTTTTATATTTATTTCAAGATTCAATATTCATGTAATATACCATATCTTCTTATTTGACGCATTTTGATCAATAACCCACTTTTAGATGTATATTATTAGTCTTTTAAGATGTGTGGTGCATTTAAAATTTTAGTTTTCTTGACTTTATATAATAATAAAATTTGATGAACTTAATTTTAGTATATTGCATAACTTTTTTAAGGTTTTAGAAATTACATTCCAATCATATGGTATTTTCTTGTTATTTACAAATCTAGTTTGCGTTTAGAAGCAAACCTTGTTATAATAATTAATTGACGGGAAGAACCAAGATATTCATGGATCGTGATGAATTTAATCTAGTTTAGTTCATGTCACCAGAACTTTAAATGACTTGGTTGGAAAACCTTTGTCTTCCTGATTTTAGAGGATGAACATGGGCATTAGTACATTATTGACAAACAAAAGAAAAAATGGAAGATAGAAATTACTCACATCACTACGATTACTAATGACTTTGTTGAAAAACAGAAGAACTTGTTCAAGTTTGGAGAATGAAGATAAAAGATAGATACTAAAACATTATTCTCCAAACTTCAATGAGTTATCGAATCCTTGGGGGGTGGAGGGGGGGGGGGGGGGGGGGGGGGGAAGAGTATGGAGAAGCTTAGTTTGGTGTGCAAGAGTATGGAGAAGCTTACGCGAGATTTTCTTTGGGAAGGGGTGGACAAAAGGAAAGACTCATATGGTCAGTTGGGAGGTTATTGGGAGACCTGTTAACCAAGGGGGGTTGGAGCTAGGAAATCTAAGGTTACACAACGAAGCTCTGTTGGCTAAATGATTTTGGCGCTTTTCCTTTGAGCCTGAATCTTTGCGGCACAAGATTAGTGTTAGTAGGCATGGTCCCCACCTATTTGAATGGTTATCCAAAGCGGTTAAAGGTACATTTTGGAATCTGTGGAATGATATTTCTCTTGAGCTCCCTTCCTACTCCTTTCATGTTCTTTTTGTGGTGGGGGAAGGTAGGGATACTTATTTTTTGGAAGATCAGTGGGTGGGAGTTAGATCCTTTTGCTCTGCGTTTCCTCGTTTCCTCATTTATATTATCTTTCTTCCTACAAAAATCGTCCTGTTTTTGATTTCTTTGTTTGGTTAGGGAGCTCAATGTCTTTTTCCTTTGTTTTCCGTTGTTTTTTTGTTCGATAGGGAAGCGAAAGCGGTTGACTCTTTGTTGTCCTTATTTGATGAGTTTAATTTTAGGCCAGGTAGAAGGGATGTTCGCTTTTGGAGTCCCAATCCTCTTGAGGGGTTTTCTTGTAAATCCTTCTTCGGTTATTATTGGATCTCTCTCCCGTTATTGAGTCGGTTTTTGATGTGCTTTGGAGGATTAAGATCTCGAAGAAAGTTAAATTCTTTACTTGGCAAGGTTTACTTGGCCGTGTGAACACTATGTTAGGCTTCTGAGGAAGGAGTCTTTTGCTTATGGGATCTTTTTTTGTATTCTTTGTTGGAAGACAGAGGAAGACCTGGATCACCTTCTTTGGAGTTGTCAGTTTGCGAGATCGGTGTGGAACTGTTTGTTTCAAGAGTTTGATATCGAGCTAGCTCGCTGGAGAGATGTTCAGGAGACAATTGACGAGTTCCTTCTCCATCTACCTTTCAAAGAGAGTGTTTAGGGGTGCTTGGTGAGGTTCCATGTTTCTCTTTGGGCTTCGGTCTCGAAGACTTTTTGTAATTATCCTCTAGGTAGTATCTTATTTAGTTGGAAACCCTTTCTTTAGAGGGGTTTTGTGGGTTTTTTTTTGTTGTCCTTGTATTCTTTCATTTTTTCTCATTGAAAACAGTTGTTTCTATTTAAAAAAAGTTTAAATCTATAATTATATGTATTTAAAACGATATCTATTTAGTTTTCTAGAAAAAAGATGCTGTTTAATCTGATTTTGGACAAAATAGGACAACATAGAAATGTAAAGATTCCTTTCCCGAATATATATTTACTGTGCGGTTTCATAATTCAGTTTTATATATCCAATGATTGTGCAATCGTATTGAGTTAGCTTTGATTATGTGGTGAGTCATTAACTTATGGGAATGACGCATAGTTTTTGACTTTATGCAAGCAGGTATCTGGGCAAGACAAGTCTTCACCTAGTAGTAGTGCAATCACTTCATCATCAAATGTATCTCATAAATTGAGGTCGCATATTGTTCCAGGTTACTCTAATGAAATATCTCAGTATCCCAATCAATTGTCAACATCGTGCAGGTTTTCAACGTACCCCGAAAACCATGTAGAAGGTGATTTTACTTTTCTTTATATTCGTCTTTGCATTCTTAGTTTCACTAAGAGTTGTATTTTTTTTTACTTTCTTGGCCTTTTCCACATTAGTTCAACAAAAGTTTATTTCTTTCATTCAGCGCTTCCTTGCCCTGGTTTAGTTAACCAATATAATGGGTATGGATCACATTTGGATAACTACAATAAAGAATACAGTCAGAGATATTCTGGAACAACTTTGGATAGCTTTAACCAACCTAAATCACGCCGCCATGTTACGAGTTATCCAATATACTATCCTCCTTATGATCTTTTGAAATAA

mRNA sequence

ATGTCAGGAAGATCAAATGGATGCACCATTTACGTTGGTAATTTGGATGAAAGGGTAAGTGACAGGGTTCTCTATGACATTCTAATCCAAGCTGGGCGGGTAGTGGACTTACACATTCCTCGGGACAAGGAATCTGCCAAACCTAAGGGTTTTGCTTTTGCAGAATATGAAAGTGAAGAGATTGCCAACTATGCTGTTAAGCTTTTCTCTGGTCTCGTGAATCTTCATAATCGTACCTTGAAGTTTGCAGTATCTGGGCAAGACAAGCCTTCACCAGGTAGCTATGCAATCACTTCATCATCAAATATATCCAATAAATCGCGGTCACAGATTGTTTCGAGTTACTCTAATGAAATATCTCAGCATTCCAATCGCTTTACTACATCATGTAAATTTACAACATATCCTGAGAACCATCTAGAAGAGCTACTTTACCCTGGTTTAGTTAACCAATATAATGGGTATGGATCACATTTGGATAACTACAATAAAGAATACAGTCAGAGAACACTCATGTCAGGAAGATCAAATGGCTGCACCGTTTACGTAGGTAATTTGGATGAAAGGGTAAGTGATAGAGTTCTTTATGACATTTTAATCCAAGCTGGGCGGGTAGTGGACTTGCACATTCCTCGGGACAAGGAATCTGGCAAGTCCAAGGGTTTTGCTTTTGCAGTATATGAAAATGAGGAGATTACCAACTATGCTGTTAAGCTTTTCTCTGGTCTTGTGACTCTTCATAACCGTACCCTGAAGTTTGCAGTATCTGGGCAAGACAAGTCTTCACCTAGTAGTAGTGCAATCACTTCATCATCAAATGTATCTCATAAATTGAGGTCGCATATTGTTCCAGGTTACTCTAATGAAATATCTCAGTATCCCAATCAATTGTCAACATCGTGCAGGTTTTCAACGTACCCCGAAAACCATGTAGAAGCGCTTCCTTGCCCTGGTTTAGTTAACCAATATAATGGGTATGGATCACATTTGGATAACTACAATAAAGAATACAGTCAGAGATATTCTGGAACAACTTTGGATAGCTTTAACCAACCTAAATCACGCCGCCATGTTACGAGTTATCCAATATACTATCCTCCTTATGATCTTTTGAAATAA

Coding sequence (CDS)

ATGTCAGGAAGATCAAATGGATGCACCATTTACGTTGGTAATTTGGATGAAAGGGTAAGTGACAGGGTTCTCTATGACATTCTAATCCAAGCTGGGCGGGTAGTGGACTTACACATTCCTCGGGACAAGGAATCTGCCAAACCTAAGGGTTTTGCTTTTGCAGAATATGAAAGTGAAGAGATTGCCAACTATGCTGTTAAGCTTTTCTCTGGTCTCGTGAATCTTCATAATCGTACCTTGAAGTTTGCAGTATCTGGGCAAGACAAGCCTTCACCAGGTAGCTATGCAATCACTTCATCATCAAATATATCCAATAAATCGCGGTCACAGATTGTTTCGAGTTACTCTAATGAAATATCTCAGCATTCCAATCGCTTTACTACATCATGTAAATTTACAACATATCCTGAGAACCATCTAGAAGAGCTACTTTACCCTGGTTTAGTTAACCAATATAATGGGTATGGATCACATTTGGATAACTACAATAAAGAATACAGTCAGAGAACACTCATGTCAGGAAGATCAAATGGCTGCACCGTTTACGTAGGTAATTTGGATGAAAGGGTAAGTGATAGAGTTCTTTATGACATTTTAATCCAAGCTGGGCGGGTAGTGGACTTGCACATTCCTCGGGACAAGGAATCTGGCAAGTCCAAGGGTTTTGCTTTTGCAGTATATGAAAATGAGGAGATTACCAACTATGCTGTTAAGCTTTTCTCTGGTCTTGTGACTCTTCATAACCGTACCCTGAAGTTTGCAGTATCTGGGCAAGACAAGTCTTCACCTAGTAGTAGTGCAATCACTTCATCATCAAATGTATCTCATAAATTGAGGTCGCATATTGTTCCAGGTTACTCTAATGAAATATCTCAGTATCCCAATCAATTGTCAACATCGTGCAGGTTTTCAACGTACCCCGAAAACCATGTAGAAGCGCTTCCTTGCCCTGGTTTAGTTAACCAATATAATGGGTATGGATCACATTTGGATAACTACAATAAAGAATACAGTCAGAGATATTCTGGAACAACTTTGGATAGCTTTAACCAACCTAAATCACGCCGCCATGTTACGAGTTATCCAATATACTATCCTCCTTATGATCTTTTGAAATAA

Protein sequence

MSGRSNGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESAKPKGFAFAEYESEEIANYAVKLFSGLVNLHNRTLKFAVSGQDKPSPGSYAITSSSNISNKSRSQIVSSYSNEISQHSNRFTTSCKFTTYPENHLEELLYPGLVNQYNGYGSHLDNYNKEYSQRTLMSGRSNGCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKSKGFAFAVYENEEITNYAVKLFSGLVTLHNRTLKFAVSGQDKSSPSSSAITSSSNVSHKLRSHIVPGYSNEISQYPNQLSTSCRFSTYPENHVEALPCPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLDSFNQPKSRRHVTSYPIYYPPYDLLK

Homology

[Close]

BLAST of HG10003486 vs. NCBI nr
Match: XP_038890486.1 (RNA-binding protein 7-like [Benincasa hispida])

HSP 1 Score: 362.8 bits (930), Expect = 3.4e-96
Identity = 184/201 (91.54%), Postives = 190/201 (94.53%), Query Frame = 0


Query: 172 MSGRSNGCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKSKGFAFAVYENEE 231
           MSGRSNGCTVYVGNLDER+SDRVLYDILIQAGRVVDLHIPRDKESGK KGFAF VYE+EE
Sbjct: 1   MSGRSNGCTVYVGNLDERISDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFVVYESEE 60

Query: 232 ITNYAVKLFSGLVTLHNRTLKFAVSGQDKSSPSSSAITSSSNVSHKLRSHIVPGYSNEIS 291
           ITNYAVKLFSGLVTL+NRTLKFAVSGQDKSSPSSSAITSSSNVSHK RSHIV GYS EIS
Sbjct: 61  ITNYAVKLFSGLVTLYNRTLKFAVSGQDKSSPSSSAITSSSNVSHKSRSHIVLGYS-EIS 120

Query: 292 QYPNQLSTSCRFSTYPENHVEALPCPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLDSFNQ 351
           QY + LSTSCRFSTYPE+HVEAL  PGLVNQYNGYGSHLDNYNKEYSQRYSGTTLDSFNQ
Sbjct: 121 QYSSHLSTSCRFSTYPEDHVEALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLDSFNQ 180

Query: 352 PKSRRHVTSYPIYYPPYDLLK 373
           PKSRRHVTSYP+YY  YDLLK
Sbjct: 181 PKSRRHVTSYPVYYHSYDLLK 200

[Close]

BLAST of HG10003486 vs. NCBI nr
Match: XP_022932504.1 (RNA-binding protein 7 isoform X1 [Cucurbita moschata])

HSP 1 Score: 348.6 bits (893), Expect = 6.7e-92
Identity = 170/200 (85.00%), Postives = 183/200 (91.50%), Query Frame = 0


Query: 172 MSGRSNGCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKSKGFAFAVYENEE 231
           MSGRSNGCT+Y+GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESG+ +G+AFA YENEE
Sbjct: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60

Query: 232 ITNYAVKLFSGLVTLHNRTLKFAVSGQDKSSPSSSAITSSSNVSHKLRSHIVPGYSNEIS 291
           ITNYAVKLFSGLVTLHNRTLKFAVSGQDK SPSSSAITSSSN+SHK RS IVPGYSNEIS
Sbjct: 61  ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRSQIVPGYSNEIS 120

Query: 292 QYPNQLSTSCRFSTYPENHVEALPCPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLDSFNQ 351
            Y N+LS SCRFS YPENHVEA P PGLVNQ NGYGS+ D++N +YSQRYSGT LDSFN 
Sbjct: 121 SYSNRLSNSCRFSAYPENHVEAPPYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNH 180

Query: 352 PKSRRHVTSYPIYYPPYDLL 372
           PKSRRH TSYP+YYPPY+LL
Sbjct: 181 PKSRRHDTSYPVYYPPYELL 200

[Close]

BLAST of HG10003486 vs. NCBI nr
Match: XP_022973396.1 (RNA-binding protein 7-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 347.4 bits (890), Expect = 1.5e-91
Identity = 169/200 (84.50%), Postives = 183/200 (91.50%), Query Frame = 0


Query: 172 MSGRSNGCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKSKGFAFAVYENEE 231
           MSGRSNGCT+Y+GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESG+ +G+AFA YENEE
Sbjct: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60

Query: 232 ITNYAVKLFSGLVTLHNRTLKFAVSGQDKSSPSSSAITSSSNVSHKLRSHIVPGYSNEIS 291
           ITNYAVKLFSGLVTLHNRTLKFAVSGQDK SPSSSAITSSSN+SHK RS IVPGYSNEIS
Sbjct: 61  ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRSQIVPGYSNEIS 120

Query: 292 QYPNQLSTSCRFSTYPENHVEALPCPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLDSFNQ 351
            Y N+LS SCRFS YPENH+EA P PGLVNQ NGYGS+ D++N +YSQRYSGT LDSFN 
Sbjct: 121 SYSNRLSNSCRFSAYPENHLEAPPYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNH 180

Query: 352 PKSRRHVTSYPIYYPPYDLL 372
           PKSRRH TSYP+YYPPY+LL
Sbjct: 181 PKSRRHDTSYPVYYPPYELL 200

[Close]

BLAST of HG10003486 vs. NCBI nr
Match: XP_023523852.1 (RNA-binding protein 7-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 342.0 bits (876), Expect = 6.3e-90
Identity = 167/200 (83.50%), Postives = 182/200 (91.00%), Query Frame = 0


Query: 172 MSGRSNGCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKSKGFAFAVYENEE 231
           MSGRSNGCT+Y+GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESG+ +G+AFA YENEE
Sbjct: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60

Query: 232 ITNYAVKLFSGLVTLHNRTLKFAVSGQDKSSPSSSAITSSSNVSHKLRSHIVPGYSNEIS 291
           ITNYAVKLFSGLVTLHNRTLKFAVSGQDK SPSSSAITSSSN+SHK RS IVPGYSNEIS
Sbjct: 61  ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRSQIVPGYSNEIS 120

Query: 292 QYPNQLSTSCRFSTYPENHVEALPCPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLDSFNQ 351
            Y N+LS SCRFS Y ENH+EA P PGLVNQ NGYGS+ D++N +YSQRYSGT LDSFN 
Sbjct: 121 SYSNRLSNSCRFSAYRENHLEAPPYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNH 180

Query: 352 PKSRRHVTSYPIYYPPYDLL 372
           PKSRRH TSYP++YPPY+LL
Sbjct: 181 PKSRRHDTSYPVHYPPYELL 200

[Close]

BLAST of HG10003486 vs. NCBI nr
Match: KAA0039301.1 (RNA-binding protein 7-like isoform X1 [Cucumis melo var. makuwa] >TYK00485.1 RNA-binding protein 7-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 333.2 bits (853), Expect = 2.9e-87
Identity = 170/201 (84.58%), Postives = 180/201 (89.55%), Query Frame = 0


Query: 172 MSGRSNGCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKSKGFAFAVYENEE 231
           MSG SN CTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDK+SGK KGFAFAVYE+EE
Sbjct: 1   MSGGSNSCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDSGKPKGFAFAVYESEE 60

Query: 232 ITNYAVKLFSGLVTLHNRTLKFAVSGQDKSSPSSSAITSSSNVSHKLRSHIVPGYSNEIS 291
           I NYAVKLFSGLV+LH+R LKFAVSGQDKSSP++SA+TSSSNVSHK RSH   GYSNEIS
Sbjct: 61  IANYAVKLFSGLVSLHSRILKFAVSGQDKSSPTNSAVTSSSNVSHKSRSH---GYSNEIS 120

Query: 292 QYPNQLSTSCRFSTYPENHVEALPCPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLDSFNQ 351
           QY N  ST CR  TYPENHV+AL   GLVNQYNGYGSH+DNYNKEYSQRY GTTLDSF Q
Sbjct: 121 QYSNHPSTLCR--TYPENHVQALLYLGLVNQYNGYGSHMDNYNKEYSQRYRGTTLDSFKQ 180

Query: 352 PKSRRHVTSYPIYYPPYDLLK 373
           PKSRRHVTSYP+YYP YDLLK
Sbjct: 181 PKSRRHVTSYPVYYPSYDLLK 196

[Close]

BLAST of HG10003486 vs. ExPASy Swiss-Prot
Match: Q09442 (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans OX=6239 GN=sap-49 PE=1 SV=2)

HSP 1 Score: 86.3 bits (212), Expect = 8.1e-16
Identity = 67/267 (25.09%), Postives = 117/267 (43.82%), Query Frame = 0


Query: 4   RSNGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESAKPKGFAFAEYESEEIAN 63
           R+   TIYVG LDE+VS+ +L+++++QAG VV +++P+D+ +A  +GF F E+  EE A+
Sbjct: 9   RNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDAD 68

Query: 64  YAVKLFSGLVNLHNRTLKFAVSGQDKPSPGSYAITSSSNISNKSRSQIVSSYSNEISQHS 123
           YA+K+ + ++ L+ + +K                                          
Sbjct: 69  YAIKILN-MIKLYGKPIK------------------------------------------ 128

Query: 124 NRFTTSCKFTTYPENHLEELLYPGLVNQYNGYGSHLDNYNKEYSQRTLMSGRSNGCTVYV 183
                                    VN+ + +  ++D                 G  ++V
Sbjct: 129 -------------------------VNKASAHEKNMD----------------VGANIFV 188

Query: 184 GNLDERVSDRVLYDILIQAGRVVDL-HIPRDKESGKSKGFAFAVYENEEITNYAVKLFSG 243
           GNLD  V +++LYD     G ++ +  I RD +SG SKGFAF  + + E ++ A++  +G
Sbjct: 189 GNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNG 190

Query: 244 LVTLHNR--TLKFAVSGQDKSSPSSSA 268
              L NR  T+ +A     K     +A
Sbjct: 249 QF-LCNRAITVSYAFKRDSKGERHGTA 190

[Close]

BLAST of HG10003486 vs. ExPASy Swiss-Prot
Match: Q15427 (Splicing factor 3B subunit 4 OS=Homo sapiens OX=9606 GN=SF3B4 PE=1 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 4.0e-15
Identity = 63/270 (23.33%), Postives = 118/270 (43.70%), Query Frame = 0


Query: 1   MSGRSNGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESAKPKGFAFAEYESEE 60
           +S R+   T+YVG LDE+VS+ +L+++ +QAG VV+ H+P+D+ + + +G+ F E+ SEE
Sbjct: 6   ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65

Query: 61  IANYAVKLFSGLVNLHNRTLKFAVSGQDKPSPGSYAITSSSNISNKSRSQIVSSYSNEIS 120
            A+YA+K+ + ++ L+ + ++                                       
Sbjct: 66  DADYAIKIMN-MIKLYGKPIR--------------------------------------- 125

Query: 121 QHSNRFTTSCKFTTYPENHLEELLYPGLVNQYNGYGSHLDNYNKEYSQRTLMSGRSNGCT 180
                                       VN+ + +  +LD                 G  
Sbjct: 126 ----------------------------VNKASAHNKNLD----------------VGAN 185

Query: 181 VYVGNLDERVSDRVLYDILIQAGRVVDL-HIPRDKESGKSKGFAFAVYENEEITNYAVKL 240
           +++GNLD  + +++LYD     G ++    I RD ++G SKG+AF  + + + ++ A++ 
Sbjct: 186 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 190

Query: 241 FSGLVTLHNR--TLKFAVSGQDKSSPSSSA 268
            +G   L NR  T+ +A     K     SA
Sbjct: 246 MNGQY-LCNRPITVSYAFKKDSKGERHGSA 190

[Close]

BLAST of HG10003486 vs. ExPASy Swiss-Prot
Match: Q8QZY9 (Splicing factor 3B subunit 4 OS=Mus musculus OX=10090 GN=Sf3b4 PE=1 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 4.0e-15
Identity = 63/270 (23.33%), Postives = 118/270 (43.70%), Query Frame = 0


Query: 1   MSGRSNGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESAKPKGFAFAEYESEE 60
           +S R+   T+YVG LDE+VS+ +L+++ +QAG VV+ H+P+D+ + + +G+ F E+ SEE
Sbjct: 6   ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65

Query: 61  IANYAVKLFSGLVNLHNRTLKFAVSGQDKPSPGSYAITSSSNISNKSRSQIVSSYSNEIS 120
            A+YA+K+ + ++ L+ + ++                                       
Sbjct: 66  DADYAIKIMN-MIKLYGKPIR--------------------------------------- 125

Query: 121 QHSNRFTTSCKFTTYPENHLEELLYPGLVNQYNGYGSHLDNYNKEYSQRTLMSGRSNGCT 180
                                       VN+ + +  +LD                 G  
Sbjct: 126 ----------------------------VNKASAHNKNLD----------------VGAN 185

Query: 181 VYVGNLDERVSDRVLYDILIQAGRVVDL-HIPRDKESGKSKGFAFAVYENEEITNYAVKL 240
           +++GNLD  + +++LYD     G ++    I RD ++G SKG+AF  + + + ++ A++ 
Sbjct: 186 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 190

Query: 241 FSGLVTLHNR--TLKFAVSGQDKSSPSSSA 268
            +G   L NR  T+ +A     K     SA
Sbjct: 246 MNGQY-LCNRPITVSYAFKKDSKGERHGSA 190

[Close]

BLAST of HG10003486 vs. ExPASy Swiss-Prot
Match: Q6AYL5 (Splicing factor 3B subunit 4 OS=Rattus norvegicus OX=10116 GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 4.0e-15
Identity = 63/270 (23.33%), Postives = 118/270 (43.70%), Query Frame = 0


Query: 1   MSGRSNGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESAKPKGFAFAEYESEE 60
           +S R+   T+YVG LDE+VS+ +L+++ +QAG VV+ H+P+D+ + + +G+ F E+ SEE
Sbjct: 6   ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65

Query: 61  IANYAVKLFSGLVNLHNRTLKFAVSGQDKPSPGSYAITSSSNISNKSRSQIVSSYSNEIS 120
            A+YA+K+ + ++ L+ + ++                                       
Sbjct: 66  DADYAIKIMN-MIKLYGKPIR--------------------------------------- 125

Query: 121 QHSNRFTTSCKFTTYPENHLEELLYPGLVNQYNGYGSHLDNYNKEYSQRTLMSGRSNGCT 180
                                       VN+ + +  +LD                 G  
Sbjct: 126 ----------------------------VNKASAHNKNLD----------------VGAN 185

Query: 181 VYVGNLDERVSDRVLYDILIQAGRVVDL-HIPRDKESGKSKGFAFAVYENEEITNYAVKL 240
           +++GNLD  + +++LYD     G ++    I RD ++G SKG+AF  + + + ++ A++ 
Sbjct: 186 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 190

Query: 241 FSGLVTLHNR--TLKFAVSGQDKSSPSSSA 268
            +G   L NR  T+ +A     K     SA
Sbjct: 246 MNGQY-LCNRPITVSYAFKKDSKGERHGSA 190

[Close]

BLAST of HG10003486 vs. ExPASy Swiss-Prot
Match: O14102 (Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sap49 PE=3 SV=2)

HSP 1 Score: 79.0 bits (193), Expect = 1.3e-13
Identity = 67/292 (22.95%), Postives = 116/292 (39.73%), Query Frame = 0


Query: 4   RSNGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESAKPKGFAFAEYESEEIAN 63
           R+   TIY+GNLDE+V+D +L+++ +QAG VV++HIPRD+      GF F E+  E+   
Sbjct: 7   RNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVE 66

Query: 64  YAVKLFSGLVNLHNRTLKFAVSGQDKPSPGSYAITSSSNISNKSRSQIVSSYSNEISQHS 123
           YA ++ +  V L  + ++   + QD+                                  
Sbjct: 67  YACQILN-QVKLFGKPIRVNRASQDR---------------------------------- 126

Query: 124 NRFTTSCKFTTYPENHLEELLYPGLVNQYNGYGSHLDNYNKEYSQRTLMSGRSNGCTVYV 183
                                                         TL+     G  ++V
Sbjct: 127 -------------------------------------------GVNTLI-----GANLFV 186

Query: 184 GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKSKGFAFAVYENEEITNYAVKLFSGL 243
           GNLD  V +RVLYD     G++V        E+G+SKG+ F  Y++ E  + A++  +  
Sbjct: 187 GNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQ 215

Query: 244 VTLHNR-TLKFAVSGQDK-------SSPSSSAITSSSNVSHKLRSHIVPGYS 288
             ++   T+ +A   + K       +    +A    + V+   +S + PG+S
Sbjct: 247 FLMNKPITVSYAFKREGKGERHGDIAERKLAAAAKKNKVAVTPQSTLPPGFS 215

[Close]

BLAST of HG10003486 vs. ExPASy TrEMBL
Match: A0A0A0KXV1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G648670 PE=4 SV=1)

HSP 1 Score: 541.2 bits (1393), Expect = 3.4e-150
Identity = 310/504 (61.51%), Postives = 328/504 (65.08%), Query Frame = 0


Query: 1   MSGRSNGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESAKPKGFAFAEYESEE 60
           MSGRSNGCTIY+GNLDE+VSDRVLYDILIQAGRVVDLHIPRDKES KPKGFAFAEYESEE
Sbjct: 1   MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHNRTLKFAVSGQDKPSPGSYAITSSSNISNKSRSQIVSSYSNEIS 120
           IANYAVKLFSGLVNLH RTLKFAVSGQDKPSPGS AITSSS              S+EIS
Sbjct: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSSR-------------SHEIS 120

Query: 121 QHSNRFTTSCKFTTYPENHLEELLYPGLVNQYNGYGSHLDNYNKEYSQR----------- 180
           Q+SNRF+ SC+F TYPENHLE LL PGLVNQ+NGYGSHLDNYNKEYSQR           
Sbjct: 121 QYSNRFSPSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQ 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 PKSRRHDSSFPMVVDGLEENDAIFGYLLRCLLAYVIEYVVILPGLCAFWFAISAFGYACR 240

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 241 LPFKPLAPSANKPTQSISKHRCFQAWRSQLPAPTHASIVSHTDYPYPQTDYNQFTFRLFF 300

Query: 301 -TLMSGRSNGCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKSKGFAFAVYE 360
            T MSG SN CTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDK++GK KGFAFAVYE
Sbjct: 301 GTTMSGGSNACTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDTGKPKGFAFAVYE 360

Query: 361 NEEITNYAVKLFSGLVTLHNRTLKFAVSGQDKSSPSSSAITSSSNVSHKLRSHIVPGYSN 373
           +EEI NYAVKLFSGLV+LH+R LKFAVSGQDKSSP++SAITSSSNVSHK RSH   GYSN
Sbjct: 361 SEEIANYAVKLFSGLVSLHSRILKFAVSGQDKSSPTNSAITSSSNVSHKSRSH---GYSN 420

[Close]

BLAST of HG10003486 vs. ExPASy TrEMBL
Match: A0A6J1EX61 (RNA-binding protein 7 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111438905 PE=4 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 3.2e-92
Identity = 170/200 (85.00%), Postives = 183/200 (91.50%), Query Frame = 0


Query: 172 MSGRSNGCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKSKGFAFAVYENEE 231
           MSGRSNGCT+Y+GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESG+ +G+AFA YENEE
Sbjct: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60

Query: 232 ITNYAVKLFSGLVTLHNRTLKFAVSGQDKSSPSSSAITSSSNVSHKLRSHIVPGYSNEIS 291
           ITNYAVKLFSGLVTLHNRTLKFAVSGQDK SPSSSAITSSSN+SHK RS IVPGYSNEIS
Sbjct: 61  ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRSQIVPGYSNEIS 120

Query: 292 QYPNQLSTSCRFSTYPENHVEALPCPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLDSFNQ 351
            Y N+LS SCRFS YPENHVEA P PGLVNQ NGYGS+ D++N +YSQRYSGT LDSFN 
Sbjct: 121 SYSNRLSNSCRFSAYPENHVEAPPYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNH 180

Query: 352 PKSRRHVTSYPIYYPPYDLL 372
           PKSRRH TSYP+YYPPY+LL
Sbjct: 181 PKSRRHDTSYPVYYPPYELL 200

[Close]

BLAST of HG10003486 vs. ExPASy TrEMBL
Match: A0A6J1I8J0 (RNA-binding protein 7-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111471946 PE=4 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 7.2e-92
Identity = 169/200 (84.50%), Postives = 183/200 (91.50%), Query Frame = 0


Query: 172 MSGRSNGCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKSKGFAFAVYENEE 231
           MSGRSNGCT+Y+GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESG+ +G+AFA YENEE
Sbjct: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60

Query: 232 ITNYAVKLFSGLVTLHNRTLKFAVSGQDKSSPSSSAITSSSNVSHKLRSHIVPGYSNEIS 291
           ITNYAVKLFSGLVTLHNRTLKFAVSGQDK SPSSSAITSSSN+SHK RS IVPGYSNEIS
Sbjct: 61  ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRSQIVPGYSNEIS 120

Query: 292 QYPNQLSTSCRFSTYPENHVEALPCPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLDSFNQ 351
            Y N+LS SCRFS YPENH+EA P PGLVNQ NGYGS+ D++N +YSQRYSGT LDSFN 
Sbjct: 121 SYSNRLSNSCRFSAYPENHLEAPPYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNH 180

Query: 352 PKSRRHVTSYPIYYPPYDLL 372
           PKSRRH TSYP+YYPPY+LL
Sbjct: 181 PKSRRHDTSYPVYYPPYELL 200

[Close]

BLAST of HG10003486 vs. ExPASy TrEMBL
Match: A0A5A7TCE4 (RNA-binding protein 7-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00930 PE=4 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 1.4e-87
Identity = 170/201 (84.58%), Postives = 180/201 (89.55%), Query Frame = 0


Query: 172 MSGRSNGCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKSKGFAFAVYENEE 231
           MSG SN CTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDK+SGK KGFAFAVYE+EE
Sbjct: 1   MSGGSNSCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDSGKPKGFAFAVYESEE 60

Query: 232 ITNYAVKLFSGLVTLHNRTLKFAVSGQDKSSPSSSAITSSSNVSHKLRSHIVPGYSNEIS 291
           I NYAVKLFSGLV+LH+R LKFAVSGQDKSSP++SA+TSSSNVSHK RSH   GYSNEIS
Sbjct: 61  IANYAVKLFSGLVSLHSRILKFAVSGQDKSSPTNSAVTSSSNVSHKSRSH---GYSNEIS 120

Query: 292 QYPNQLSTSCRFSTYPENHVEALPCPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLDSFNQ 351
           QY N  ST CR  TYPENHV+AL   GLVNQYNGYGSH+DNYNKEYSQRY GTTLDSF Q
Sbjct: 121 QYSNHPSTLCR--TYPENHVQALLYLGLVNQYNGYGSHMDNYNKEYSQRYRGTTLDSFKQ 180

Query: 352 PKSRRHVTSYPIYYPPYDLLK 373
           PKSRRHVTSYP+YYP YDLLK
Sbjct: 181 PKSRRHVTSYPVYYPSYDLLK 196

[Close]

BLAST of HG10003486 vs. ExPASy TrEMBL
Match: A0A1S3CBQ3 (RNA-binding protein 7-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498659 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 5.9e-86
Identity = 168/201 (83.58%), Postives = 179/201 (89.05%), Query Frame = 0


Query: 172 MSGRSNGCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKSKGFAFAVYENEE 231
           MSG SN CTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDK+SG  KGFAFAVYE+EE
Sbjct: 1   MSGGSNSCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDSGIPKGFAFAVYESEE 60

Query: 232 ITNYAVKLFSGLVTLHNRTLKFAVSGQDKSSPSSSAITSSSNVSHKLRSHIVPGYSNEIS 291
           I NYAVKLFSGLV+LH+R LKFAVSGQDKSSP++SA+TSSSNVSHK RSH   GYSNEIS
Sbjct: 61  IANYAVKLFSGLVSLHSRILKFAVSGQDKSSPTNSAVTSSSNVSHKSRSH---GYSNEIS 120

Query: 292 QYPNQLSTSCRFSTYPENHVEALPCPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLDSFNQ 351
           QY N  STSCR  TYPENHV+AL   GLVNQYNGY SH+DNYNKEYSQRY GTTLDSF Q
Sbjct: 121 QYSNHPSTSCR--TYPENHVQALLYLGLVNQYNGYASHMDNYNKEYSQRYGGTTLDSFKQ 180

Query: 352 PKSRRHVTSYPIYYPPYDLLK 373
           PKSRR+VTSYP+YYP YDLLK
Sbjct: 181 PKSRRNVTSYPVYYPSYDLLK 196

[Close]

BLAST of HG10003486 vs. TAIR 10
Match: AT4G10110.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 165.2 bits (417), Expect = 9.8e-41
Identity = 99/192 (51.56%), Postives = 127/192 (66.15%), Query Frame = 0


Query: 172 MSGRSNGCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKSKGFAFAVYENEE 231
           MSG SN CTVY+GN+DERVSDRVLYDI+IQAGRV+DLHIPRDKE+ K KGFAFA YE EE
Sbjct: 1   MSGTSN-CTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEE 60

Query: 232 ITNYAVKLFSGLVTLHNRTLKFAVSGQDKSSPSSSAITSSSNVSHKLR------SHIVPG 291
           I +YAVKLFSGLV+L+NRTLKFA+SGQDK        ++S+N  H+ R       H    
Sbjct: 61  IADYAVKLFSGLVSLYNRTLKFAISGQDKLQ------SNSANSGHRARPQSLAFEHSDRA 120

Query: 292 YSNEISQYPNQLSTSCRFSTYPENHVEALPCPGLVNQYNGYGSHLDNYNKEYSQRYSGTT 351
             + + ++ +QL +    S  P ++ +  P PG+ N     G+ L     EYS+R  G+ 
Sbjct: 121 AYHHLERFSSQLISPP--SPLPLDYTQEPPPPGVSN-----GASL-----EYSRRVLGSA 173

Query: 352 LDSFNQPKSRRH 358
           LDS N  + RR+
Sbjct: 181 LDSINHSRPRRY 173

[Close]

BLAST of HG10003486 vs. TAIR 10
Match: AT2G18510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 75.5 bits (184), Expect = 1.0e-13
Identity = 32/88 (36.36%), Postives = 61/88 (69.32%), Query Frame = 0


Query: 4   RSNGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESAKPKGFAFAEYESEEIAN 63
           R+   T+YVG LD ++S+ +L+++ +QAG VV++++P+D+ +   + + F EY SEE A+
Sbjct: 21  RNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDAD 80

Query: 64  YAVKLFSGLVNLHNRTLKFAVSGQDKPS 92
           YA+K+ + ++ LH + ++   + QDK S
Sbjct: 81  YAIKVLN-MIKLHGKPIRVNKASQDKKS 107

[Close]

BLAST of HG10003486 vs. TAIR 10
Match: AT1G49760.1 (poly(A) binding protein 8 )

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-10
Identity = 66/250 (26.40%), Postives = 115/250 (46.00%), Query Frame = 0


Query: 9   TIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESAKPKGFAFAEYESEEIANYAVKL 68
           ++YVG+LD  V+D  L++   QAG+VV + + RD  + +  G+ +  Y + + A+ A+  
Sbjct: 46  SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105

Query: 69  FSGLVNLHNRTLKFAVSGQD----KPSPGSYAITS-SSNISNKSRSQIVSSY----SNEI 128
            +  + L+ R ++   S +D    K   G+  I +   +I +K+  +  S++    S ++
Sbjct: 106 LN-FMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKV 165

Query: 129 SQHSNRFTTSCKFTTYPENHLEELLYPGLVNQYNGYGSHLDNYNKEY-------SQRTLM 188
           +   +  +    F  Y  +   +    G +++ NG    L N  + Y        QR   
Sbjct: 166 AVDPSGQSKGYGFVQYDTDEAAQ----GAIDKLNGM---LLNDKQVYVGPFVHKLQRDPS 225

Query: 189 SGRSNGCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKSKGFAFAVYENEEI 243
             +     VYV NL E +SD  L  +  + G      I RD E GKSKGF F  +EN + 
Sbjct: 226 GEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDD 285

[Close]

BLAST of HG10003486 vs. TAIR 10
Match: AT1G49760.2 (poly(A) binding protein 8 )

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-10
Identity = 66/250 (26.40%), Postives = 115/250 (46.00%), Query Frame = 0


Query: 9   TIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESAKPKGFAFAEYESEEIANYAVKL 68
           ++YVG+LD  V+D  L++   QAG+VV + + RD  + +  G+ +  Y + + A+ A+  
Sbjct: 46  SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105

Query: 69  FSGLVNLHNRTLKFAVSGQD----KPSPGSYAITS-SSNISNKSRSQIVSSY----SNEI 128
            +  + L+ R ++   S +D    K   G+  I +   +I +K+  +  S++    S ++
Sbjct: 106 LN-FMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKV 165

Query: 129 SQHSNRFTTSCKFTTYPENHLEELLYPGLVNQYNGYGSHLDNYNKEY-------SQRTLM 188
           +   +  +    F  Y  +   +    G +++ NG    L N  + Y        QR   
Sbjct: 166 AVDPSGQSKGYGFVQYDTDEAAQ----GAIDKLNGM---LLNDKQVYVGPFVHKLQRDPS 225

Query: 189 SGRSNGCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKSKGFAFAVYENEEI 243
             +     VYV NL E +SD  L  +  + G      I RD E GKSKGF F  +EN + 
Sbjct: 226 GEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDD 285

[Close]

BLAST of HG10003486 vs. TAIR 10
Match: AT3G53460.4 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 49.7 bits (117), Expect = 6.0e-06
Identity = 56/249 (22.49%), Postives = 95/249 (38.15%), Query Frame = 0


Query: 10  IYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESAKPKGFAFAEYESEEIANYAVKLF 69
           ++VGNL   V    L  +   AG V  + +  DK + + +GF F    +      A + F
Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160

Query: 70  SGLVNLHNRTL---------KFAVSGQDKPSPGSYAITSSSNISNKSRSQIVSSYSNEIS 129
           +G V+ +  +L            +  + +P   +          + SR      Y +E  
Sbjct: 161 NGYVSRYLCSLLCLYLLIRVLCGLEFEGRPLRVNAGPPPPKREESFSRGPRSGGYGSERG 220

Query: 130 QHSNRFTTSCKFTTYPENHLEELLYPGLVNQYNGYGSHLDNYNKEYSQRTLM-------S 189
                       +     +  E        +  GYGS         SQR+         S
Sbjct: 221 GGYGSERGGGYGSERGGGYGSE--------RGGGYGSQRSGGGYGGSQRSSYGSGSGSGS 280

Query: 190 GRSNGCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKSKGFAFAVYENEEIT 243
           G  +G  +YVGNL   V D  L ++  + G+VV+  +  D++SG+SKGF F    + +  
Sbjct: 281 GSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEV 340

The following BLAST results are available for this feature:

BLAST of HG10003486 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890486.1	3.4e-96	91.54	RNA-binding protein 7-like [Benincasa hispida]	[more]
XP_022932504.1	6.7e-92	85.00	RNA-binding protein 7 isoform X1 [Cucurbita moschata]	[more]
XP_022973396.1	1.5e-91	84.50	RNA-binding protein 7-like isoform X1 [Cucurbita maxima]	[more]
XP_023523852.1	6.3e-90	83.50	RNA-binding protein 7-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
KAA0039301.1	2.9e-87	84.58	RNA-binding protein 7-like isoform X1 [Cucumis melo var. makuwa] >TYK00485.1 RNA...	[more]

BLAST of HG10003486 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q09442	8.1e-16	25.09	Splicing factor 3B subunit 4 OS=Caenorhabditis elegans OX=6239 GN=sap-49 PE=1 SV...	[more]
Q15427	4.0e-15	23.33	Splicing factor 3B subunit 4 OS=Homo sapiens OX=9606 GN=SF3B4 PE=1 SV=1	[more]
Q8QZY9	4.0e-15	23.33	Splicing factor 3B subunit 4 OS=Mus musculus OX=10090 GN=Sf3b4 PE=1 SV=1	[more]
Q6AYL5	4.0e-15	23.33	Splicing factor 3B subunit 4 OS=Rattus norvegicus OX=10116 GN=Sf3b4 PE=2 SV=1	[more]
O14102	1.3e-13	22.95	Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe (strain 972 / ATC...	[more]

BLAST of HG10003486 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXV1	3.4e-150	61.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G648670 PE=4 SV=1	[more]
A0A6J1EX61	3.2e-92	85.00	RNA-binding protein 7 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111438905 P...	[more]
A0A6J1I8J0	7.2e-92	84.50	RNA-binding protein 7-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11147194...	[more]
A0A5A7TCE4	1.4e-87	84.58	RNA-binding protein 7-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3CBQ3	5.9e-86	83.58	RNA-binding protein 7-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498659 PE...	[more]

BLAST of HG10003486 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10110.1	9.8e-41	51.56	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G18510.1	1.0e-13	36.36	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G49760.1	1.1e-10	26.40	poly(A) binding protein 8	[more]
AT1G49760.2	1.1e-10	26.40	poly(A) binding protein 8	[more]
AT3G53460.4	6.0e-06	22.49	chloroplast RNA-binding protein 29	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 180..254 e-value: 5.0E-16 score: 69.2 coord: 9..83 e-value: 3.4E-16 score: 69.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 10..80 e-value: 3.2E-13 score: 49.3 coord: 181..252 e-value: 7.4E-13 score: 48.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 8..87 score: 14.641094
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 179..258 score: 14.487596
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 173..266 e-value: 8.0E-18 score: 66.4 coord: 2..91 e-value: 6.7E-18 score: 66.7
None	No IPR available	PANTHER	PTHR13798	RNA BINDING MOTIF RBM PROTEIN -RELATED	coord: 1..170
None	No IPR available	PANTHER	PTHR13798:SF11	OS01G0876500 PROTEIN	coord: 1..170
None	No IPR available	PANTHER	PTHR13798	RNA BINDING MOTIF RBM PROTEIN -RELATED	coord: 172..368
None	No IPR available	PANTHER	PTHR13798:SF11	OS01G0876500 PROTEIN	coord: 172..368
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 150..254
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 6..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10003486.1	HG10003486.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding