HG10003269 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10003269
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	4-hydroxy-4-methyl-2-oxoglutarate aldolase
Location	Chr11: 19528128 .. 19528508 (-)
RNA-Seq Expression	HG10003269
Synteny	HG10003269

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATCACATGTCACAAACGGAGATCTCCGAGTACTGCTTGGTGAGACAGCTTCTTGAAAGCAAAGGTGAGGGGAGGGTTCTGGTGATAGATGGGAATGGAAGCAGAAGATGTGCATTGTTGGGAGGTAATCTTGGGCAGTTAGCTCAAAACAATGGGTGGGCTGGGATTGTTGTAAATGGATCATAGAGTGTTGATGAGATCAATAATTGTGATATTGGTGTCAGAGCATTAGGGACCAATCCATTGAAGTCAAACAAGAAAGGGATGGTAGAAAAGCATGTGGTTATTCAAATTGGTGGCACTCTGATTCATGAAGGAGAGTGGTTGTATGCTGATAGTGATGGCATTTTGGTGTCCAAATTTGAGTTGTCTGTTTGA

mRNA sequence

ATGCATCACATGTCACAAACGGAGATCTCCGAGTACTGCTTGGTGAGACAGCTTCTTGAAAGCAAAGGTGAGGGGAGGGTTCTGGTGATAGATGGGAATGGAAGCAGAAGATGTGCATTGTTGGGAGGGACCAATCCATTGAAGTCAAACAAGAAAGGGATGGTAGAAAAGCATGTGGTTATTCAAATTGGTGGCACTCTGATTCATGAAGGAGAGTGGTTGTATGCTGATAGTGATGGCATTTTGGTGTCCAAATTTGAGTTGTCTGTTTGA

Coding sequence (CDS)

ATGCATCACATGTCACAAACGGAGATCTCCGAGTACTGCTTGGTGAGACAGCTTCTTGAAAGCAAAGGTGAGGGGAGGGTTCTGGTGATAGATGGGAATGGAAGCAGAAGATGTGCATTGTTGGGAGGGACCAATCCATTGAAGTCAAACAAGAAAGGGATGGTAGAAAAGCATGTGGTTATTCAAATTGGTGGCACTCTGATTCATGAAGGAGAGTGGTTGTATGCTGATAGTGATGGCATTTTGGTGTCCAAATTTGAGTTGTCTGTTTGA

Protein sequence

MHHMSQTEISEYCLVRQLLESKGEGRVLVIDGNGSRRCALLGGTNPLKSNKKGMVEKHVVIQIGGTLIHEGEWLYADSDGILVSKFELSV

Homology

[Close]

BLAST of HG10003269 vs. NCBI nr
Match: XP_038903077.1 (putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Benincasa hispida] >XP_038903078.1 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Benincasa hispida])

HSP 1 Score: 132.9 bits (333), Expect = 1.4e-27
Identity = 73/114 (64.04%), Postives = 76/114 (66.67%), Query Frame = 0


Query: 14  LVRQLLESKGEGRVLVIDGNGSRRCALLG------------------------------- 73
           LVRQLLE+KGEGRVLVIDGNGSRRCALLG                               
Sbjct: 53  LVRQLLETKGEGRVLVIDGNGSRRCALLGGNLGQLSHNNGWAGIVVNGCIRDVDEINNCD 112

Query: 74  ------GTNPLKSNKKGMVEKHVVIQIGGTLIHEGEWLYADSDGILVSKFELSV 91
                 GTNPLKSNKKGM EKHVV++IGGTLIHEGEWLYADSDGILVSKFELSV
Sbjct: 113 IGVRALGTNPLKSNKKGMGEKHVVLEIGGTLIHEGEWLYADSDGILVSKFELSV 166

[Close]

BLAST of HG10003269 vs. NCBI nr
Match: XP_004148273.1 (putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucumis sativus] >XP_004148274.1 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucumis sativus] >XP_011650460.1 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucumis sativus] >XP_031739443.1 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucumis sativus] >KGN55987.1 hypothetical protein Csa_009602 [Cucumis sativus])

HSP 1 Score: 132.1 bits (331), Expect = 2.4e-27
Identity = 73/114 (64.04%), Postives = 75/114 (65.79%), Query Frame = 0


Query: 14  LVRQLLESKGEGRVLVIDGNGSRRCALLG------------------------------- 73
           LVRQLLE+KGEGRVLVIDGNGSRRCALLG                               
Sbjct: 53  LVRQLLETKGEGRVLVIDGNGSRRCALLGGNLGQLAQNNGWAGIVVNGCIRDVDEINNCD 112

Query: 74  ------GTNPLKSNKKGMVEKHVVIQIGGTLIHEGEWLYADSDGILVSKFELSV 91
                 G NPLKSNKKGM EKHVV+QIGGTLIHEGEWLYADSDGILVSKFELSV
Sbjct: 113 VGVRALGANPLKSNKKGMGEKHVVLQIGGTLIHEGEWLYADSDGILVSKFELSV 166

[Close]

BLAST of HG10003269 vs. NCBI nr
Match: XP_008448991.1 (PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucumis melo] >XP_008448992.1 PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucumis melo] >TYK19391.1 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucumis melo var. makuwa])

HSP 1 Score: 131.3 bits (329), Expect = 4.1e-27
Identity = 72/114 (63.16%), Postives = 75/114 (65.79%), Query Frame = 0


Query: 14  LVRQLLESKGEGRVLVIDGNGSRRCALLG------------------------------- 73
           LVRQLLE+KGEGRVLVIDGNGSRRCALLG                               
Sbjct: 53  LVRQLLETKGEGRVLVIDGNGSRRCALLGGNLGQLAQNNGWAGIVVNGCIRDVDEINNCD 112

Query: 74  ------GTNPLKSNKKGMVEKHVVIQIGGTLIHEGEWLYADSDGILVSKFELSV 91
                 GTNPLKSNKKGM +KHVV+QIGGTLIHEGEWLYAD DGILVSKFELSV
Sbjct: 113 IGVRALGTNPLKSNKKGMGDKHVVLQIGGTLIHEGEWLYADGDGILVSKFELSV 166

[Close]

BLAST of HG10003269 vs. NCBI nr
Match: XP_022143459.1 (putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Momordica charantia])

HSP 1 Score: 130.2 bits (326), Expect = 9.1e-27
Identity = 71/114 (62.28%), Postives = 74/114 (64.91%), Query Frame = 0


Query: 14  LVRQLLESKGEGRVLVIDGNGSRRCALLG------------------------------- 73
           LVRQLLES+GEGRVLV+DGNGSRRCALLG                               
Sbjct: 53  LVRQLLESQGEGRVLVVDGNGSRRCALLGGNLGQLAQNMGWAGIVVNGCIRDVDEINVCD 112

Query: 74  ------GTNPLKSNKKGMVEKHVVIQIGGTLIHEGEWLYADSDGILVSKFELSV 91
                 G NPLKSNKKGM EKHV +QIGGTLIHEGEWLYADSDGILVSKFELSV
Sbjct: 113 VGVRALGANPLKSNKKGMGEKHVAVQIGGTLIHEGEWLYADSDGILVSKFELSV 166

[Close]

BLAST of HG10003269 vs. NCBI nr
Match: XP_023540534.1 (putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucurbita pepo subsp. pepo] >XP_023540535.1 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucurbita pepo subsp. pepo] >KAG7028314.1 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 128.6 bits (322), Expect = 2.6e-26
Identity = 71/114 (62.28%), Postives = 74/114 (64.91%), Query Frame = 0


Query: 14  LVRQLLESKGEGRVLVIDGNGSRRCALLG------------------------------- 73
           LVRQLLES+GEGRVLVIDGNGSRRCALLG                               
Sbjct: 53  LVRQLLESQGEGRVLVIDGNGSRRCALLGGNLGQVAQSMGWAGVVVNGCIRDVDEINNCD 112

Query: 74  ------GTNPLKSNKKGMVEKHVVIQIGGTLIHEGEWLYADSDGILVSKFELSV 91
                 GTNPLKSNKKG+ EKHV + IGGTLIHEGEWLYADSDGILVSKFELSV
Sbjct: 113 VGVRALGTNPLKSNKKGLGEKHVPVHIGGTLIHEGEWLYADSDGILVSKFELSV 166

[Close]

BLAST of HG10003269 vs. ExPASy Swiss-Prot
Match: Q9FH13 (Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 OS=Arabidopsis thaliana OX=3702 GN=At5g56260 PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.0e-20
Identity = 58/114 (50.88%), Postives = 65/114 (57.02%), Query Frame = 0


Query: 14  LVRQLLESKGEGRVLVIDGNGSRRCALLG------------------------------- 73
           LVR  LE+KGEG VLVIDG GS RCAL+G                               
Sbjct: 53  LVRNQLETKGEGGVLVIDGGGSMRCALVGGNLGQLAQNNGWSGIVVNGCVRDVDEINDCD 112

Query: 74  ------GTNPLKSNKKGMVEKHVVIQIGGTLIHEGEWLYADSDGILVSKFELSV 91
                 G+NPLKS KKG  EK+V + IGGTLI +GEWLYADSDGIL+SK ELSV
Sbjct: 113 VGVRALGSNPLKSTKKGHGEKNVPVHIGGTLIRDGEWLYADSDGILISKTELSV 166

[Close]

BLAST of HG10003269 vs. ExPASy Swiss-Prot
Match: Q9FFE0 (Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 OS=Arabidopsis thaliana OX=3702 GN=At5g16450 PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.6e-18
Identity = 49/114 (42.98%), Postives = 65/114 (57.02%), Query Frame = 0


Query: 14  LVRQLLESKGEGRVLVIDGNGSRRCALLGG------------------------------ 73
           L+RQ +E KG GRVLV+DG GS+RCA+LGG                              
Sbjct: 53  LIRQFIEEKGNGRVLVVDGGGSQRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCD 112

Query: 74  -------TNPLKSNKKGMVEKHVVIQIGGTLIHEGEWLYADSDGILVSKFELSV 91
                  ++P+K++KKG+ E+ V + I GT I +GEWLYAD+DGILVS+ ELSV
Sbjct: 113 IGVRALASHPIKASKKGLGEQRVPVNIAGTRICDGEWLYADTDGILVSQIELSV 166

[Close]

BLAST of HG10003269 vs. ExPASy Swiss-Prot
Match: Q9M8R9 (Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 1 OS=Arabidopsis thaliana OX=3702 GN=At3g02770 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.3e-17
Identity = 49/114 (42.98%), Postives = 63/114 (55.26%), Query Frame = 0


Query: 14  LVRQLLESKGEGRVLVIDGNGSRRCALLGG------------------------------ 73
           L+R  LE KG GRVLV+DG GS RCA+LGG                              
Sbjct: 53  LIRHFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIIVNGCIRDVDEINGCD 112

Query: 74  -------TNPLKSNKKGMVEKHVVIQIGGTLIHEGEWLYADSDGILVSKFELSV 91
                  ++P+K++KKG+ E+ V + I GT I +GEWLYAD+DGILVS+ ELSV
Sbjct: 113 IGVRALASHPIKASKKGLGEQRVSLNIAGTRICDGEWLYADTDGILVSQIELSV 166

[Close]

BLAST of HG10003269 vs. ExPASy Swiss-Prot
Match: Q8XZP1 (Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Ralstonia solanacearum (strain GMI1000) OX=267608 GN=RSc1354 PE=3 SV=2)

HSP 1 Score: 76.3 bits (186), Expect = 2.0e-13
Identity = 43/112 (38.39%), Postives = 54/112 (48.21%), Query Frame = 0


Query: 14  LVRQLLESKGEGRVLVIDGNGSRRCALLGG------------------------------ 73
           LVR +LE  GEGRVLV+DG GS RCAL+GG                              
Sbjct: 52  LVRAMLEQPGEGRVLVVDGGGSLRCALVGGNLAKLAEDNGWEGVLVNGCVRDTRELAACN 111

Query: 74  -------TNPLKSNKKGMVEKHVVIQIGGTLIHEGEWLYADSDGILVSKFEL 89
                   +P KS KK   E+ + +Q+ G  IH GEW+Y D DG+LVS+  L
Sbjct: 112 VGVHALAAHPRKSFKKNQGERDIGVQMPGAYIHPGEWIYGDEDGVLVSRERL 163

[Close]

BLAST of HG10003269 vs. ExPASy Swiss-Prot
Match: Q46ZV6 (Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) OX=264198 GN=Reut_A1963 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.7e-13
Identity = 41/112 (36.61%), Postives = 57/112 (50.89%), Query Frame = 0


Query: 14  LVRQLLESKGEGRVLVIDGNGSRRCALLGG------------------------------ 73
           LVR+ LES G+GRVLV+DG GS RCAL+GG                              
Sbjct: 52  LVREALESPGQGRVLVVDGGGSLRCALVGGNLGLLAEKNGWVGIIVNGCVRDTGELDVCD 111

Query: 74  -------TNPLKSNKKGMVEKHVVIQIGGTLIHEGEWLYADSDGILVSKFEL 89
                   +P KS K+G  E+ V +Q+ G ++  G W+Y D+DG+LVS+ +L
Sbjct: 112 IGIRALAAHPQKSQKRGAGERDVAVQMPGAVVRPGNWIYVDADGVLVSEEKL 163

[Close]

BLAST of HG10003269 vs. ExPASy TrEMBL
Match: A0A0A0L5X9 (4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cucumis sativus OX=3659 GN=Csa_3G044520 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.2e-27
Identity = 73/114 (64.04%), Postives = 75/114 (65.79%), Query Frame = 0


Query: 14  LVRQLLESKGEGRVLVIDGNGSRRCALLG------------------------------- 73
           LVRQLLE+KGEGRVLVIDGNGSRRCALLG                               
Sbjct: 53  LVRQLLETKGEGRVLVIDGNGSRRCALLGGNLGQLAQNNGWAGIVVNGCIRDVDEINNCD 112

Query: 74  ------GTNPLKSNKKGMVEKHVVIQIGGTLIHEGEWLYADSDGILVSKFELSV 91
                 G NPLKSNKKGM EKHVV+QIGGTLIHEGEWLYADSDGILVSKFELSV
Sbjct: 113 VGVRALGANPLKSNKKGMGEKHVVLQIGGTLIHEGEWLYADSDGILVSKFELSV 166

[Close]

BLAST of HG10003269 vs. ExPASy TrEMBL
Match: A0A1S3BKF1 (4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cucumis melo OX=3656 GN=LOC103490998 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.0e-27
Identity = 72/114 (63.16%), Postives = 75/114 (65.79%), Query Frame = 0


Query: 14  LVRQLLESKGEGRVLVIDGNGSRRCALLG------------------------------- 73
           LVRQLLE+KGEGRVLVIDGNGSRRCALLG                               
Sbjct: 53  LVRQLLETKGEGRVLVIDGNGSRRCALLGGNLGQLAQNNGWAGIVVNGCIRDVDEINNCD 112

Query: 74  ------GTNPLKSNKKGMVEKHVVIQIGGTLIHEGEWLYADSDGILVSKFELSV 91
                 GTNPLKSNKKGM +KHVV+QIGGTLIHEGEWLYAD DGILVSKFELSV
Sbjct: 113 IGVRALGTNPLKSNKKGMGDKHVVLQIGGTLIHEGEWLYADGDGILVSKFELSV 166

[Close]

BLAST of HG10003269 vs. ExPASy TrEMBL
Match: A0A5D3D743 (4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G00240 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.0e-27
Identity = 72/114 (63.16%), Postives = 75/114 (65.79%), Query Frame = 0


Query: 14  LVRQLLESKGEGRVLVIDGNGSRRCALLG------------------------------- 73
           LVRQLLE+KGEGRVLVIDGNGSRRCALLG                               
Sbjct: 53  LVRQLLETKGEGRVLVIDGNGSRRCALLGGNLGQLAQNNGWAGIVVNGCIRDVDEINNCD 112

Query: 74  ------GTNPLKSNKKGMVEKHVVIQIGGTLIHEGEWLYADSDGILVSKFELSV 91
                 GTNPLKSNKKGM +KHVV+QIGGTLIHEGEWLYAD DGILVSKFELSV
Sbjct: 113 IGVRALGTNPLKSNKKGMGDKHVVLQIGGTLIHEGEWLYADGDGILVSKFELSV 166

[Close]

BLAST of HG10003269 vs. ExPASy TrEMBL
Match: A0A6J1CPD0 (4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Momordica charantia OX=3673 GN=LOC111013332 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 4.4e-27
Identity = 71/114 (62.28%), Postives = 74/114 (64.91%), Query Frame = 0


Query: 14  LVRQLLESKGEGRVLVIDGNGSRRCALLG------------------------------- 73
           LVRQLLES+GEGRVLV+DGNGSRRCALLG                               
Sbjct: 53  LVRQLLESQGEGRVLVVDGNGSRRCALLGGNLGQLAQNMGWAGIVVNGCIRDVDEINVCD 112

Query: 74  ------GTNPLKSNKKGMVEKHVVIQIGGTLIHEGEWLYADSDGILVSKFELSV 91
                 G NPLKSNKKGM EKHV +QIGGTLIHEGEWLYADSDGILVSKFELSV
Sbjct: 113 VGVRALGANPLKSNKKGMGEKHVAVQIGGTLIHEGEWLYADSDGILVSKFELSV 166

[Close]

BLAST of HG10003269 vs. ExPASy TrEMBL
Match: A0A6J1KXS9 (4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cucurbita maxima OX=3661 GN=LOC111498522 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.3e-26
Identity = 71/114 (62.28%), Postives = 74/114 (64.91%), Query Frame = 0


Query: 14  LVRQLLESKGEGRVLVIDGNGSRRCALLG------------------------------- 73
           LVRQLLES+GEGRVLVIDGNGSRRCALLG                               
Sbjct: 53  LVRQLLESQGEGRVLVIDGNGSRRCALLGGNLGQVAQSMGWAGVVVNGCIRDVDEINNCD 112

Query: 74  ------GTNPLKSNKKGMVEKHVVIQIGGTLIHEGEWLYADSDGILVSKFELSV 91
                 GTNPLKSNKKG+ EKHV + IGGTLIHEGEWLYADSDGILVSKFELSV
Sbjct: 113 VGVRALGTNPLKSNKKGLGEKHVPVHIGGTLIHEGEWLYADSDGILVSKFELSV 166

[Close]

BLAST of HG10003269 vs. TAIR 10
Match: AT5G56260.1 (Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase )

HSP 1 Score: 100.5 bits (249), Expect = 7.2e-22
Identity = 58/114 (50.88%), Postives = 65/114 (57.02%), Query Frame = 0


Query: 14  LVRQLLESKGEGRVLVIDGNGSRRCALLG------------------------------- 73
           LVR  LE+KGEG VLVIDG GS RCAL+G                               
Sbjct: 53  LVRNQLETKGEGGVLVIDGGGSMRCALVGGNLGQLAQNNGWSGIVVNGCVRDVDEINDCD 112

Query: 74  ------GTNPLKSNKKGMVEKHVVIQIGGTLIHEGEWLYADSDGILVSKFELSV 91
                 G+NPLKS KKG  EK+V + IGGTLI +GEWLYADSDGIL+SK ELSV
Sbjct: 113 VGVRALGSNPLKSTKKGHGEKNVPVHIGGTLIRDGEWLYADSDGILISKTELSV 166

[Close]

BLAST of HG10003269 vs. TAIR 10
Match: AT5G16450.1 (Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase )

HSP 1 Score: 92.0 bits (227), Expect = 2.5e-19
Identity = 49/114 (42.98%), Postives = 65/114 (57.02%), Query Frame = 0


Query: 14  LVRQLLESKGEGRVLVIDGNGSRRCALLGG------------------------------ 73
           L+RQ +E KG GRVLV+DG GS+RCA+LGG                              
Sbjct: 53  LIRQFIEEKGNGRVLVVDGGGSQRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCD 112

Query: 74  -------TNPLKSNKKGMVEKHVVIQIGGTLIHEGEWLYADSDGILVSKFELSV 91
                  ++P+K++KKG+ E+ V + I GT I +GEWLYAD+DGILVS+ ELSV
Sbjct: 113 IGVRALASHPIKASKKGLGEQRVPVNIAGTRICDGEWLYADTDGILVSQIELSV 166

[Close]

BLAST of HG10003269 vs. TAIR 10
Match: AT5G16450.2 (Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase )

HSP 1 Score: 92.0 bits (227), Expect = 2.5e-19
Identity = 49/114 (42.98%), Postives = 65/114 (57.02%), Query Frame = 0


Query: 14  LVRQLLESKGEGRVLVIDGNGSRRCALLGG------------------------------ 73
           L+RQ +E KG GRVLV+DG GS+RCA+LGG                              
Sbjct: 53  LIRQFIEEKGNGRVLVVDGGGSQRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCD 112

Query: 74  -------TNPLKSNKKGMVEKHVVIQIGGTLIHEGEWLYADSDGILVSKFELSV 91
                  ++P+K++KKG+ E+ V + I GT I +GEWLYAD+DGILVS+ ELSV
Sbjct: 113 IGVRALASHPIKASKKGLGEQRVPVNIAGTRICDGEWLYADTDGILVSQIELSV 166

[Close]

BLAST of HG10003269 vs. TAIR 10
Match: AT3G02770.1 (Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase )

HSP 1 Score: 89.4 bits (220), Expect = 1.6e-18
Identity = 49/114 (42.98%), Postives = 63/114 (55.26%), Query Frame = 0


Query: 14  LVRQLLESKGEGRVLVIDGNGSRRCALLGG------------------------------ 73
           L+R  LE KG GRVLV+DG GS RCA+LGG                              
Sbjct: 53  LIRHFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIIVNGCIRDVDEINGCD 112

Query: 74  -------TNPLKSNKKGMVEKHVVIQIGGTLIHEGEWLYADSDGILVSKFELSV 91
                  ++P+K++KKG+ E+ V + I GT I +GEWLYAD+DGILVS+ ELSV
Sbjct: 113 IGVRALASHPIKASKKGLGEQRVSLNIAGTRICDGEWLYADTDGILVSQIELSV 166

The following BLAST results are available for this feature:

BLAST of HG10003269 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903077.1	1.4e-27	64.04	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Benincasa hispida] >XP_03...	[more]
XP_004148273.1	2.4e-27	64.04	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucumis sativus] >XP_0041...	[more]
XP_008448991.1	4.1e-27	63.16	PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucumis melo] ...	[more]
XP_022143459.1	9.1e-27	62.28	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Momordica charantia]	[more]
XP_023540534.1	2.6e-26	62.28	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucurbita pepo subsp. pep...	[more]

BLAST of HG10003269 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FH13	1.0e-20	50.88	Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 OS=Arabidopsis thaliana OX...	[more]
Q9FFE0	3.6e-18	42.98	Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 OS=Arabidopsis thaliana OX...	[more]
Q9M8R9	2.3e-17	42.98	Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 1 OS=Arabidopsis thaliana OX...	[more]
Q8XZP1	2.0e-13	38.39	Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Ralstonia solanacearum (s...	[more]
Q46ZV6	2.7e-13	36.61	Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cupriavidus pinatubonensi...	[more]

BLAST of HG10003269 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5X9	1.2e-27	64.04	4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cucumis sativus OX=3659 GN=Csa_3G0...	[more]
A0A1S3BKF1	2.0e-27	63.16	4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cucumis melo OX=3656 GN=LOC1034909...	[more]
A0A5D3D743	2.0e-27	63.16	4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A6J1CPD0	4.4e-27	62.28	4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1KXS9	1.3e-26	62.28	4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]

BLAST of HG10003269 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G56260.1	7.2e-22	50.88	Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase	[more]
AT5G16450.1	2.5e-19	42.98	Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase	[more]
AT5G16450.2	2.5e-19	42.98	Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase	[more]
AT3G02770.1	1.6e-18	42.98	Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.50.30.40		coord: 43..90 e-value: 1.5E-8 score: 36.3
None	No IPR available	PANTHER	PTHR33254	4-HYDROXY-4-METHYL-2-OXOGLUTARATE ALDOLASE 3-RELATED	coord: 43..90 coord: 11..43
None	No IPR available	PANTHER	PTHR33254:SF22	4-HYDROXY-4-METHYL-2-OXOGLUTARATE ALDOLASE	coord: 43..90 coord: 11..43
IPR005493	Ribonuclease E inhibitor RraA/RraA-like protein	PFAM	PF03737	RraA-like	coord: 43..83 e-value: 5.0E-7 score: 30.0
IPR005493	Ribonuclease E inhibitor RraA/RraA-like protein	CDD	cd16841	RraA_family	coord: 14..84 e-value: 3.22067E-22 score: 82.1221
IPR036704	Ribonuclease E inhibitor RraA/RraA-like superfamily	SUPERFAMILY	89562	RraA-like	coord: 11..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10003269.1	HG10003269.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016829	lyase activity