HG10003143 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCATGCCTTATTTGTTTCTCATTCTTTTAATCTTCTTGTCTACTTTGCATGTGTGCGACGCTCGTCGTTTTCGATTCTTTGAGAGTTCGAGTTCTGTTTCGAGGATTGAACCGCATTTGATATCCCAGGGTATTTGGACGGATCAGACGGAAAGAAGTTTTGATGAAAGCAATAGTGACAAGGCTTCTTATAAAGAGATTATTGTTGGGAATGAAATGTTAAAGGTATATTACATATATATTCCATGTCTCATATCTTTATGATTTAGTTCATTTTTTAAAATAAAGAATACGTAGGATCAGGGGTACACTCGAATATCTCCACTAGGTGGACACTCTCTTAACACCTACATCATCTCCCAATTAAATATATTCGATATCTATATGGGAGGGAGAGGGGAGTGTCAAGAAACCATATGAACTAAAATATTTTTTATAGATATGTAGACATTTTCATTGACATTTCTATATGTTGGAAAGAAGCTCAACATCAAAATATACAAGGTGACAATAAAATATATATTTCCCTCATAAATAATGTTATAAACATGTCAACAAACAAAAAATATAAATAAACAAATACAATTGTATAATGATCAAGGACTTATCTTGTTTGGAAATTTCAACCATTTCCATGGTTTTTGGTCAAAATATTTATCGGTATCAATATATTCGTTTTATACAGACCAATGTAATATCATTTTATCGTCATTTCTATTTACATTTGTATAAACTTGAAATCTCATAATTTCCATCAACATCAACATTTAATTTTTGATTTTTGAGTCACAAGACAAATCACGAATATAGACAACATTTAATTTCTTGGATCAAGACGAGTTTATTAATATAACATAGACAAAGGCACATGAATGATAAATGAATGAAAAAATGGATTATGGAAATATAGTGAGTGATATTAATTATGAACATTGGTATTTTTAGCAGGGAATGAAGAAGCATGGGAAGAGGTTGGTAATGGAGTTTCCAAAGAAAGAAAAAGTGTTGAATTCTGAGGAAAATGAAGTTGGAGAAGACATGGTAGTGATGGATTATGCACAACCCCACAGAAAACCTCCTATTCACAATGCAAAACCCTAA ATGGCCATGCCTTATTTGTTTCTCATTCTTTTAATCTTCTTGTCTACTTTGCATGTGTGCGACGCTCGTCGTTTTCGATTCTTTGAGAGTTCGAGTTCTGTTTCGAGGATTGAACCGCATTTGATATCCCAGGGTATTTGGACGGATCAGACGGAAAGAAGTTTTGATGAAAGCAATAGTGACAAGGCTTCTTATAAAGAGATTATTGTTGGGAATGAAATGTTAAAGGGAATGAAGAAGCATGGGAAGAGGTTGGTAATGGAGTTTCCAAAGAAAGAAAAAGTGTTGAATTCTGAGGAAAATGAAGTTGGAGAAGACATGGTAGTGATGGATTATGCACAACCCCACAGAAAACCTCCTATTCACAATGCAAAACCCTAA ATGGCCATGCCTTATTTGTTTCTCATTCTTTTAATCTTCTTGTCTACTTTGCATGTGTGCGACGCTCGTCGTTTTCGATTCTTTGAGAGTTCGAGTTCTGTTTCGAGGATTGAACCGCATTTGATATCCCAGGGTATTTGGACGGATCAGACGGAAAGAAGTTTTGATGAAAGCAATAGTGACAAGGCTTCTTATAAAGAGATTATTGTTGGGAATGAAATGTTAAAGGGAATGAAGAAGCATGGGAAGAGGTTGGTAATGGAGTTTCCAAAGAAAGAAAAAGTGTTGAATTCTGAGGAAAATGAAGTTGGAGAAGACATGGTAGTGATGGATTATGCACAACCCCACAGAAAACCTCCTATTCACAATGCAAAACCCTAA MAMPYLFLILLIFLSTLHVCDARRFRFFESSSSVSRIEPHLISQGIWTDQTERSFDESNSDKASYKEIIVGNEMLKGMKKHGKRLVMEFPKKEKVLNSEENEVGEDMVVMDYAQPHRKPPIHNAKP Homology
BLAST of HG10003143 vs. NCBI nr
Match: XP_038905997.1 (uncharacterized protein LOC120091906 isoform X2 [Benincasa hispida]) HSP 1 Score: 211.8 bits (538), Expect = 3.3e-51 Identity = 108/124 (87.10%), Postives = 111/124 (89.52%), Query Frame = 0
BLAST of HG10003143 vs. NCBI nr
Match: XP_038905996.1 (uncharacterized protein LOC120091906 isoform X1 [Benincasa hispida]) HSP 1 Score: 207.2 bits (526), Expect = 8.2e-50 Identity = 108/125 (86.40%), Postives = 111/125 (88.80%), Query Frame = 0
BLAST of HG10003143 vs. NCBI nr
Match: XP_011650407.1 (uncharacterized protein LOC105434783 [Cucumis sativus] >KGN55873.1 hypothetical protein Csa_010787 [Cucumis sativus]) HSP 1 Score: 169.1 bits (427), Expect = 2.5e-38 Identity = 92/130 (70.77%), Postives = 104/130 (80.00%), Query Frame = 0
BLAST of HG10003143 vs. NCBI nr
Match: XP_023540680.1 (uncharacterized protein LOC111800973 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 121.7 bits (304), Expect = 4.5e-24 Identity = 79/135 (58.52%), Postives = 90/135 (66.67%), Query Frame = 0
BLAST of HG10003143 vs. NCBI nr
Match: KAG7028383.1 (Root meristem growth factor 6 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 120.2 bits (300), Expect = 1.3e-23 Identity = 77/135 (57.04%), Postives = 90/135 (66.67%), Query Frame = 0
BLAST of HG10003143 vs. ExPASy Swiss-Prot
Match: Q93VK8 (Protein GOLVEN 1 OS=Arabidopsis thaliana OX=3702 GN=GLV1 PE=1 SV=1) HSP 1 Score: 47.0 bits (110), Expect = 1.9e-04 Identity = 19/24 (79.17%), Postives = 21/24 (87.50%), Query Frame = 0
BLAST of HG10003143 vs. ExPASy TrEMBL
Match: A0A0A0L298 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G020610 PE=4 SV=1) HSP 1 Score: 169.1 bits (427), Expect = 1.2e-38 Identity = 92/130 (70.77%), Postives = 104/130 (80.00%), Query Frame = 0
BLAST of HG10003143 vs. ExPASy TrEMBL
Match: A0A6J1KZM9 (uncharacterized protein LOC111498521 OS=Cucurbita maxima OX=3661 GN=LOC111498521 PE=4 SV=1) HSP 1 Score: 114.8 bits (286), Expect = 2.7e-22 Identity = 75/137 (54.74%), Postives = 89/137 (64.96%), Query Frame = 0
BLAST of HG10003143 vs. ExPASy TrEMBL
Match: A0A6J1DKL1 (uncharacterized protein LOC111021396 OS=Momordica charantia OX=3673 GN=LOC111021396 PE=4 SV=1) HSP 1 Score: 114.0 bits (284), Expect = 4.6e-22 Identity = 76/130 (58.46%), Postives = 89/130 (68.46%), Query Frame = 0
BLAST of HG10003143 vs. ExPASy TrEMBL
Match: A0A438K320 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_009086 PE=4 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 1.2e-06 Identity = 46/127 (36.22%), Postives = 69/127 (54.33%), Query Frame = 0
BLAST of HG10003143 vs. ExPASy TrEMBL
Match: A0A2G9HFQ2 (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_10996 PE=4 SV=1) HSP 1 Score: 61.6 bits (148), Expect = 2.7e-06 Identity = 46/136 (33.82%), Postives = 67/136 (49.26%), Query Frame = 0
BLAST of HG10003143 vs. TAIR 10
Match: AT4G16515.1 (Encodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9). ) HSP 1 Score: 47.0 bits (110), Expect = 1.3e-05 Identity = 19/24 (79.17%), Postives = 21/24 (87.50%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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