HG10003087 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10003087
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	light-harvesting complex-like protein 3 isotype 1, chloroplastic
Location	Chr11: 17242068 .. 17243612 (-)
RNA-Seq Expression	HG10003087
Synteny	HG10003087

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCAATGGCTTTGTTTTCTCCTTCATCCCATCTTTCTACTCTCTCTCCTTCTTCACACCACACAAACCATTTCTCCTTCAGACCCTTTGCTTCTCTCAGAACCAGAAACCCTTCTTCTTCCTCTTTCTTCACTATCAGGGCCACTGCTGACAATGGCTCCGGAGTTTCAGGTGGTTCAGCCACTGTTGCAGTAGAAACCCCCGTCGAACAGAAGGATCCGGAGCCGGCCAAGGCTGTACTAGAAGAGCAAGAGAGCCTCGCCGGAACCAATGGATCGGTGGCGGCTGCTGAAGAAGTCGAGGTGGTTGGCAAGTTTGAAGACCCTAAATGGGTTAATGGGACTTGGGATTTGAATCAATTCCAGAAGAATGGAAGTACTGATTGGGATGCTGTTATTGATGCTGGTAACATTCATTCTTCTTTGGTTCTGAGAAATGAAAAAATTAAACTATCCTTAACCCTATATTCTCTGTTGATTTTGCTTCTAATTTCATAACTAAATCTGGATGTATAATGGGGTTGCATTGCAAATTGAGTAGAAGATTGCAAATAGATACATGCAATGTCTGAAATGCTTTTTGGGGGAATCTTGATTCTGCAAGTTTTGATGATGTTCAAATTGTAATGTAATTTCTTGGTGATGCTTGAGCATTTATTTGATCTTTCCATCAGAGGCTAGGAGGAGGAAATGGTTGGAAAACAATCCAGAATCATCAAGTAATGAGGACCCTGTGGTGTTTGACACATCCATAGTTCCTTGGTGGGCTTGGATTAAGCGCTACCATCTGCCAGAAGCTGAGCTACTCAATGGTATGAACATGTTTGTATGACTGTTTTGTCTTGTTTTCTTAAAGCTTGTCTGAGTGAAATAATGTCAAAACATGTGTGTATGCTTGTTTTTAAAGCGAGCTTAGCTCAACGATAATTGGTATCGAGTTTGGAGGTTCAAATCTCCATGCTCTACTTGTACTTAAAAAAAAAAAAAGATAGGTGTAGGGTATGCTTTGAGTGATTTTGAAATGACTATAATCACTCTAAAATATAATGTATTGTTCTCATTCATGTTTGTGAATGATGATTTAAATGTAGGTCATAACATTGGCTTCTTTGTCATTTTATTACAATTATTAAAACCAATTTGAAACAAGAATAAGTAAACTGATTTGAATAGAGCTCTCAAAACAAGTCCTTGGTTTTTATCAAAATCTTGAACTTCTATATAGCAATGAGCAAAGTATCATATTTTAGTTACTATAATGTTGAAGTAAGCGGTGCAATGGTTTTCGATGCAGGCCGTGCAGCCATGGTAGGGTTCTTCATGGCTTACTTCGTCGATAGCTTGACTGGGGTAGGACTAGTAGGTCAAATGGGCAACTTCTTCTGCAAAACTTTGTTATTTGTTGCTGTGGTGGGAGTTCTTTTGATAAGAAAGAATGAAGATATAGAGACTATAAAGAAGCTGATTGATGAGACAACATTTTATGACAAGCAATGGCAAGCAACTTGGCAGGATGAAACCTCAGGCTCAGGCAAAATGTAA

mRNA sequence

ATGTCTTCAATGGCTTTGTTTTCTCCTTCATCCCATCTTTCTACTCTCTCTCCTTCTTCACACCACACAAACCATTTCTCCTTCAGACCCTTTGCTTCTCTCAGAACCAGAAACCCTTCTTCTTCCTCTTTCTTCACTATCAGGGCCACTGCTGACAATGGCTCCGGAGTTTCAGGTGGTTCAGCCACTGTTGCAGTAGAAACCCCCGTCGAACAGAAGGATCCGGAGCCGGCCAAGGCTGTACTAGAAGAGCAAGAGAGCCTCGCCGGAACCAATGGATCGGTGGCGGCTGCTGAAGAAGTCGAGGTGGTTGGCAAGTTTGAAGACCCTAAATGGGTTAATGGGACTTGGGATTTGAATCAATTCCAGAAGAATGGAAGTACTGATTGGGATGCTGTTATTGATGCTGAGGCTAGGAGGAGGAAATGGTTGGAAAACAATCCAGAATCATCAAGTAATGAGGACCCTGTGGTGTTTGACACATCCATAGTTCCTTGGTGGGCTTGGATTAAGCGCTACCATCTGCCAGAAGCTGAGCTACTCAATGGCCGTGCAGCCATGGTAGGGTTCTTCATGGCTTACTTCGTCGATAGCTTGACTGGGGTAGGACTAGTAGGTCAAATGGGCAACTTCTTCTGCAAAACTTTGTTATTTGTTGCTGTGGTGGGAGTTCTTTTGATAAGAAAGAATGAAGATATAGAGACTATAAAGAAGCTGATTGATGAGACAACATTTTATGACAAGCAATGGCAAGCAACTTGGCAGGATGAAACCTCAGGCTCAGGCAAAATGTAA

Coding sequence (CDS)

ATGTCTTCAATGGCTTTGTTTTCTCCTTCATCCCATCTTTCTACTCTCTCTCCTTCTTCACACCACACAAACCATTTCTCCTTCAGACCCTTTGCTTCTCTCAGAACCAGAAACCCTTCTTCTTCCTCTTTCTTCACTATCAGGGCCACTGCTGACAATGGCTCCGGAGTTTCAGGTGGTTCAGCCACTGTTGCAGTAGAAACCCCCGTCGAACAGAAGGATCCGGAGCCGGCCAAGGCTGTACTAGAAGAGCAAGAGAGCCTCGCCGGAACCAATGGATCGGTGGCGGCTGCTGAAGAAGTCGAGGTGGTTGGCAAGTTTGAAGACCCTAAATGGGTTAATGGGACTTGGGATTTGAATCAATTCCAGAAGAATGGAAGTACTGATTGGGATGCTGTTATTGATGCTGAGGCTAGGAGGAGGAAATGGTTGGAAAACAATCCAGAATCATCAAGTAATGAGGACCCTGTGGTGTTTGACACATCCATAGTTCCTTGGTGGGCTTGGATTAAGCGCTACCATCTGCCAGAAGCTGAGCTACTCAATGGCCGTGCAGCCATGGTAGGGTTCTTCATGGCTTACTTCGTCGATAGCTTGACTGGGGTAGGACTAGTAGGTCAAATGGGCAACTTCTTCTGCAAAACTTTGTTATTTGTTGCTGTGGTGGGAGTTCTTTTGATAAGAAAGAATGAAGATATAGAGACTATAAAGAAGCTGATTGATGAGACAACATTTTATGACAAGCAATGGCAAGCAACTTGGCAGGATGAAACCTCAGGCTCAGGCAAAATGTAA

Protein sequence

MSSMALFSPSSHLSTLSPSSHHTNHFSFRPFASLRTRNPSSSSFFTIRATADNGSGVSGGSATVAVETPVEQKDPEPAKAVLEEQESLAGTNGSVAAAEEVEVVGKFEDPKWVNGTWDLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPEAELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETIKKLIDETTFYDKQWQATWQDETSGSGKM

Homology

[Close]

BLAST of HG10003087 vs. NCBI nr
Match: XP_038906355.1 (light-harvesting complex-like protein 3 isotype 1, chloroplastic [Benincasa hispida])

HSP 1 Score: 505.4 bits (1300), Expect = 3.0e-139
Identity = 252/264 (95.45%), Postives = 257/264 (97.35%), Query Frame = 0


Query: 1   MSSMALFSPSSHLSTLSPSSHHTNHFSFRPFASLRTRNPSSSSFFTIRATADNGSGVSGG 60
           MSSMALFSPSSHLSTLSPSSHH  HFSFRPF+SLRTRNPSSSS FTIRATADNG+G+SGG
Sbjct: 1   MSSMALFSPSSHLSTLSPSSHHRTHFSFRPFSSLRTRNPSSSSLFTIRATADNGAGISGG 60

Query: 61  SATVAVETPVEQKDPEPAKAVLEEQESLAGTNGSVAAAEEVEVVGKFEDPKWVNGTWDLN 120
           SA VAVETPVEQKDPEPAKAV EEQESLAGTNGSVAAAEEVEVV KFEDPKW+NGTWDLN
Sbjct: 61  SAAVAVETPVEQKDPEPAKAVSEEQESLAGTNGSVAAAEEVEVVSKFEDPKWINGTWDLN 120

Query: 121 QFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPEAEL 180
           QFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPEAEL
Sbjct: 121 QFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPEAEL 180

Query: 181 LNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETIKKLI 240
           LNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIET+KKLI
Sbjct: 181 LNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLKKLI 240

Query: 241 DETTFYDKQWQATWQDETSGSGKM 265
           DETTFYDKQWQATWQDE SGSGKM
Sbjct: 241 DETTFYDKQWQATWQDENSGSGKM 264

[Close]

BLAST of HG10003087 vs. NCBI nr
Match: XP_004147237.1 (light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucumis sativus] >KGN55822.1 hypothetical protein Csa_009505 [Cucumis sativus])

HSP 1 Score: 490.0 bits (1260), Expect = 1.3e-134
Identity = 251/267 (94.01%), Postives = 256/267 (95.88%), Query Frame = 0


Query: 1   MSSMALFSPSSHLSTLSPSSHHTNHFSFRPFASLRTRNP--SSSSFFTIRATADNGSGVS 60
           MSSMALFSPSSHLST SP SHHT HFSFRPF+SLRTRNP  SSSS FTIRATADNG+G+S
Sbjct: 1   MSSMALFSPSSHLSTFSP-SHHTTHFSFRPFSSLRTRNPSSSSSSLFTIRATADNGAGIS 60

Query: 61  GGSATVAVETPVEQKDPEPAKAVLEEQESLAGTNGSVAAAEE-VEVVGKFEDPKWVNGTW 120
           GGSATV+VETPVEQKDPEPAK   EEQESLAGTNGSVAAAEE VEVV KFEDPKWVNGTW
Sbjct: 61  GGSATVSVETPVEQKDPEPAKLAPEEQESLAGTNGSVAAAEEVVEVVSKFEDPKWVNGTW 120

Query: 121 DLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPE 180
           DLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPE
Sbjct: 121 DLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPE 180

Query: 181 AELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETIK 240
           AELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIET+K
Sbjct: 181 AELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLK 240

Query: 241 KLIDETTFYDKQWQATWQDETSGSGKM 265
           KLIDETTFYDKQWQATWQDETSGSGKM
Sbjct: 241 KLIDETTFYDKQWQATWQDETSGSGKM 266

[Close]

BLAST of HG10003087 vs. NCBI nr
Match: XP_008448777.1 (PREDICTED: uncharacterized protein LOC103490842 [Cucumis melo])

HSP 1 Score: 482.3 bits (1240), Expect = 2.8e-132
Identity = 250/269 (92.94%), Postives = 255/269 (94.80%), Query Frame = 0


Query: 1   MSSMALFSPSSHLSTLSPSSHHTNHFSFRPFASLRTRNP---SSSSFFTIRATADNGSGV 60
           MSSMALFSPSSHLSTLSPSSHHT HFSFRPF+SLRTRNP   SSSS FTIRATADNG+G+
Sbjct: 1   MSSMALFSPSSHLSTLSPSSHHTTHFSFRPFSSLRTRNPSSSSSSSLFTIRATADNGAGI 60

Query: 61  SGGSATVAVETPVEQKDPEPAKAVLEEQESLAGTNGSVAAAEE-VEVVGKFEDPKWVNGT 120
           SGGSATVAVETPVEQKDPEPA      +ESLAGTNGSVAAAEE VEVV KFEDPKWVNGT
Sbjct: 61  SGGSATVAVETPVEQKDPEPA------EESLAGTNGSVAAAEEVVEVVSKFEDPKWVNGT 120

Query: 121 WDLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLP 180
           WDLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLP
Sbjct: 121 WDLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLP 180

Query: 181 EAELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETI 240
           EAELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIET+
Sbjct: 181 EAELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETL 240

Query: 241 KKLIDETTFYDKQWQATWQDET-SGSGKM 265
           KKLIDETTFYDKQWQATWQDET SGSGKM
Sbjct: 241 KKLIDETTFYDKQWQATWQDETSSGSGKM 263

[Close]

BLAST of HG10003087 vs. NCBI nr
Match: KAA0041046.1 (uncharacterized protein E6C27_scaffold477G00170 [Cucumis melo var. makuwa] >TYK12056.1 uncharacterized protein E5676_scaffold1017G00700 [Cucumis melo var. makuwa])

HSP 1 Score: 480.7 bits (1236), Expect = 8.0e-132
Identity = 249/269 (92.57%), Postives = 255/269 (94.80%), Query Frame = 0


Query: 1   MSSMALFSPSSHLSTLSPSSHHTNHFSFRPFASLRTRNP---SSSSFFTIRATADNGSGV 60
           MSSMALFSPSSHLSTLSPSSHHT HFSFRPF+SLRTRNP   SSSS FTIRATADNG+G+
Sbjct: 1   MSSMALFSPSSHLSTLSPSSHHTTHFSFRPFSSLRTRNPSSSSSSSLFTIRATADNGAGI 60

Query: 61  SGGSATVAVETPVEQKDPEPAKAVLEEQESLAGTNGSVAAAEE-VEVVGKFEDPKWVNGT 120
           SGGSATVAVETPVEQKDPEPA      +ESLAGTNGSVAAAEE VEVV KFEDPKWVNGT
Sbjct: 61  SGGSATVAVETPVEQKDPEPA------EESLAGTNGSVAAAEEVVEVVSKFEDPKWVNGT 120

Query: 121 WDLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLP 180
           WDLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLP
Sbjct: 121 WDLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLP 180

Query: 181 EAELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETI 240
           EAELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIET+
Sbjct: 181 EAELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETL 240

Query: 241 KKLIDETTFYDKQWQATWQDET-SGSGKM 265
           KKLIDETTFYDKQWQATWQDET SGSGK+
Sbjct: 241 KKLIDETTFYDKQWQATWQDETSSGSGKI 263

[Close]

BLAST of HG10003087 vs. NCBI nr
Match: XP_022965154.1 (light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 431.4 bits (1108), Expect = 5.6e-117
Identity = 222/264 (84.09%), Postives = 236/264 (89.39%), Query Frame = 0


Query: 1   MSSMALFSPSSHLSTLSPSSHHTNHFSFRPFASLRTRNPSSSSFFTIRATADNGSGVSGG 60
           MSSMALFSP S LS+LSPSSHH  HF  RPF+SLR+RNPSS         ADNG+G+SGG
Sbjct: 1   MSSMALFSPPSRLSSLSPSSHHRTHFPSRPFSSLRSRNPSS------WVAADNGAGISGG 60

Query: 61  SATVAVETPVEQKDPEPAKAVLEEQESLAGTNGSVAAAEEVEVVGKFEDPKWVNGTWDLN 120
           S  VAVE  V QKDPEPA   +E++ESLA TNGSVAA EEV VV KFEDPKWVNGTWDLN
Sbjct: 61  S--VAVEPAVVQKDPEPA---VEKKESLAETNGSVAAVEEVVVVSKFEDPKWVNGTWDLN 120

Query: 121 QFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPEAEL 180
           QF+K+GSTDWDAVIDAEARRRKWLENNPESSSNEDPV+FDTSIVPWWAWIKRYHLPEAE+
Sbjct: 121 QFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEI 180

Query: 181 LNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETIKKLI 240
           LNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIET+KKLI
Sbjct: 181 LNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLKKLI 240

Query: 241 DETTFYDKQWQATWQDETSGSGKM 265
           DETTFYDKQWQATWQDET GSGK+
Sbjct: 241 DETTFYDKQWQATWQDETKGSGKV 253

[Close]

BLAST of HG10003087 vs. ExPASy Swiss-Prot
Match: Q9SYX1 (Light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIL3.1 PE=1 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.7e-76
Identity = 155/267 (58.05%), Postives = 191/267 (71.54%), Query Frame = 0


Query: 4   MALFSPSSHLSTLSPSSHHTNHFSFRPFASLRTRNPSSSSFFTIRATADNGSGVSGGSAT 63
           MALFSP    S+L  + +    FSF   +S R      S     RA++D+GS     + +
Sbjct: 1   MALFSPPISSSSLQ-NPNFIPKFSFSLLSSNR-----FSLLSVTRASSDSGSTSPTAAVS 60

Query: 64  VAVETPVE--QKDPEPAKAVLEEQESLAGTNGSVAAAE--EVEVVGKFEDPKWVNGTWDL 123
           V    PVE   K+P  +   ++++E+    N +V   E    E V KF+D +W+NGTWDL
Sbjct: 61  VEAPEPVEVIVKEPPQSTPAVKKEETATAKNVAVEGEEMKTTESVVKFQDARWINGTWDL 120

Query: 124 NQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPEAE 183
            QF+K+G TDWD+VI AEA+RRKWLE NPE++SN++PV+FDTSI+PWWAWIKRYHLPEAE
Sbjct: 121 KQFEKDGKTDWDSVIVAEAKRRKWLEENPETTSNDEPVLFDTSIIPWWAWIKRYHLPEAE 180

Query: 184 LLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETIKKL 243
           LLNGRAAM+GFFMAYFVDSLTGVGLV QMGNFFCKTLLFVAV GVL IRKNED++ +K L
Sbjct: 181 LLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVLFIRKNEDVDKLKNL 240

Query: 244 IDETTFYDKQWQATWQ---DETSGSGK 264
            DETT YDKQWQA W+   DE+ GS K
Sbjct: 241 FDETTLYDKQWQAAWKNDDDESLGSKK 261

[Close]

BLAST of HG10003087 vs. ExPASy Swiss-Prot
Match: Q6NKS4 (Light-harvesting complex-like protein 3 isotype 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIL3.2 PE=1 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 1.9e-72
Identity = 150/270 (55.56%), Postives = 186/270 (68.89%), Query Frame = 0


Query: 3   SMALFSPSSHLSTLSPSSHHTNHFSFRPFASLRTRNPSSSSFFTI-RATADNGSGVSGGS 62
           SMALFSP        P S    + +  P  S    +    S  ++ RA++DNG+      
Sbjct: 4   SMALFSP--------PISSSLQNPNLIPKISTSLLSTKRFSLISVPRASSDNGT------ 63

Query: 63  ATVAVETPVEQKDPEPAKAVLEE-------QESLAGTNGSV---AAAEEVEVVGKFEDPK 122
                 +PV +  P+PA   +EE       + S A  NG+V   A     E V K+++ K
Sbjct: 64  -----TSPVVE-IPKPASVAVEEVPVKSPAESSSASENGAVGGEATDSSTETVIKYQNAK 123

Query: 123 WVNGTWDLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIK 182
           WVNGTWDL QF+K+G TDWD+VI +EA+RRKWLE+NPE++SN++ VVFDTSI+PWWAW+K
Sbjct: 124 WVNGTWDLKQFEKDGKTDWDSVIVSEAKRRKWLEDNPETTSNDELVVFDTSIIPWWAWMK 183

Query: 183 RYHLPEAELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNE 242
           RYHLPEAELLNGRAAM+GFFMAYFVDSLTGVGLV QMGNFFCKTLLFVAV GVL IRKNE
Sbjct: 184 RYHLPEAELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVLFIRKNE 243

Query: 243 DIETIKKLIDETTFYDKQWQATWQDETSGS 262
           D++ +K L DETT YDKQWQA W++  S +
Sbjct: 244 DLDKLKDLFDETTLYDKQWQAAWKEPDSST 253

[Close]

BLAST of HG10003087 vs. ExPASy TrEMBL
Match: A0A0A0L5D8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017160 PE=4 SV=1)

HSP 1 Score: 490.0 bits (1260), Expect = 6.4e-135
Identity = 251/267 (94.01%), Postives = 256/267 (95.88%), Query Frame = 0


Query: 1   MSSMALFSPSSHLSTLSPSSHHTNHFSFRPFASLRTRNP--SSSSFFTIRATADNGSGVS 60
           MSSMALFSPSSHLST SP SHHT HFSFRPF+SLRTRNP  SSSS FTIRATADNG+G+S
Sbjct: 1   MSSMALFSPSSHLSTFSP-SHHTTHFSFRPFSSLRTRNPSSSSSSLFTIRATADNGAGIS 60

Query: 61  GGSATVAVETPVEQKDPEPAKAVLEEQESLAGTNGSVAAAEE-VEVVGKFEDPKWVNGTW 120
           GGSATV+VETPVEQKDPEPAK   EEQESLAGTNGSVAAAEE VEVV KFEDPKWVNGTW
Sbjct: 61  GGSATVSVETPVEQKDPEPAKLAPEEQESLAGTNGSVAAAEEVVEVVSKFEDPKWVNGTW 120

Query: 121 DLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPE 180
           DLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPE
Sbjct: 121 DLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPE 180

Query: 181 AELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETIK 240
           AELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIET+K
Sbjct: 181 AELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLK 240

Query: 241 KLIDETTFYDKQWQATWQDETSGSGKM 265
           KLIDETTFYDKQWQATWQDETSGSGKM
Sbjct: 241 KLIDETTFYDKQWQATWQDETSGSGKM 266

[Close]

BLAST of HG10003087 vs. ExPASy TrEMBL
Match: A0A1S3BLD8 (uncharacterized protein LOC103490842 OS=Cucumis melo OX=3656 GN=LOC103490842 PE=4 SV=1)

HSP 1 Score: 482.3 bits (1240), Expect = 1.3e-132
Identity = 250/269 (92.94%), Postives = 255/269 (94.80%), Query Frame = 0


Query: 1   MSSMALFSPSSHLSTLSPSSHHTNHFSFRPFASLRTRNP---SSSSFFTIRATADNGSGV 60
           MSSMALFSPSSHLSTLSPSSHHT HFSFRPF+SLRTRNP   SSSS FTIRATADNG+G+
Sbjct: 1   MSSMALFSPSSHLSTLSPSSHHTTHFSFRPFSSLRTRNPSSSSSSSLFTIRATADNGAGI 60

Query: 61  SGGSATVAVETPVEQKDPEPAKAVLEEQESLAGTNGSVAAAEE-VEVVGKFEDPKWVNGT 120
           SGGSATVAVETPVEQKDPEPA      +ESLAGTNGSVAAAEE VEVV KFEDPKWVNGT
Sbjct: 61  SGGSATVAVETPVEQKDPEPA------EESLAGTNGSVAAAEEVVEVVSKFEDPKWVNGT 120

Query: 121 WDLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLP 180
           WDLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLP
Sbjct: 121 WDLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLP 180

Query: 181 EAELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETI 240
           EAELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIET+
Sbjct: 181 EAELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETL 240

Query: 241 KKLIDETTFYDKQWQATWQDET-SGSGKM 265
           KKLIDETTFYDKQWQATWQDET SGSGKM
Sbjct: 241 KKLIDETTFYDKQWQATWQDETSSGSGKM 263

[Close]

BLAST of HG10003087 vs. ExPASy TrEMBL
Match: A0A5A7TG76 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00700 PE=4 SV=1)

HSP 1 Score: 480.7 bits (1236), Expect = 3.9e-132
Identity = 249/269 (92.57%), Postives = 255/269 (94.80%), Query Frame = 0


Query: 1   MSSMALFSPSSHLSTLSPSSHHTNHFSFRPFASLRTRNP---SSSSFFTIRATADNGSGV 60
           MSSMALFSPSSHLSTLSPSSHHT HFSFRPF+SLRTRNP   SSSS FTIRATADNG+G+
Sbjct: 1   MSSMALFSPSSHLSTLSPSSHHTTHFSFRPFSSLRTRNPSSSSSSSLFTIRATADNGAGI 60

Query: 61  SGGSATVAVETPVEQKDPEPAKAVLEEQESLAGTNGSVAAAEE-VEVVGKFEDPKWVNGT 120
           SGGSATVAVETPVEQKDPEPA      +ESLAGTNGSVAAAEE VEVV KFEDPKWVNGT
Sbjct: 61  SGGSATVAVETPVEQKDPEPA------EESLAGTNGSVAAAEEVVEVVSKFEDPKWVNGT 120

Query: 121 WDLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLP 180
           WDLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLP
Sbjct: 121 WDLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLP 180

Query: 181 EAELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETI 240
           EAELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIET+
Sbjct: 181 EAELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETL 240

Query: 241 KKLIDETTFYDKQWQATWQDET-SGSGKM 265
           KKLIDETTFYDKQWQATWQDET SGSGK+
Sbjct: 241 KKLIDETTFYDKQWQATWQDETSSGSGKI 263

[Close]

BLAST of HG10003087 vs. ExPASy TrEMBL
Match: A0A6J1HQ78 (light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111465096 PE=4 SV=1)

HSP 1 Score: 431.4 bits (1108), Expect = 2.7e-117
Identity = 222/264 (84.09%), Postives = 236/264 (89.39%), Query Frame = 0


Query: 1   MSSMALFSPSSHLSTLSPSSHHTNHFSFRPFASLRTRNPSSSSFFTIRATADNGSGVSGG 60
           MSSMALFSP S LS+LSPSSHH  HF  RPF+SLR+RNPSS         ADNG+G+SGG
Sbjct: 1   MSSMALFSPPSRLSSLSPSSHHRTHFPSRPFSSLRSRNPSS------WVAADNGAGISGG 60

Query: 61  SATVAVETPVEQKDPEPAKAVLEEQESLAGTNGSVAAAEEVEVVGKFEDPKWVNGTWDLN 120
           S  VAVE  V QKDPEPA   +E++ESLA TNGSVAA EEV VV KFEDPKWVNGTWDLN
Sbjct: 61  S--VAVEPAVVQKDPEPA---VEKKESLAETNGSVAAVEEVVVVSKFEDPKWVNGTWDLN 120

Query: 121 QFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPEAEL 180
           QF+K+GSTDWDAVIDAEARRRKWLENNPESSSNEDPV+FDTSIVPWWAWIKRYHLPEAE+
Sbjct: 121 QFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEI 180

Query: 181 LNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETIKKLI 240
           LNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIET+KKLI
Sbjct: 181 LNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETLKKLI 240

Query: 241 DETTFYDKQWQATWQDETSGSGKM 265
           DETTFYDKQWQATWQDET GSGK+
Sbjct: 241 DETTFYDKQWQATWQDETKGSGKV 253

[Close]

BLAST of HG10003087 vs. ExPASy TrEMBL
Match: A0A6J1EC24 (light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111431193 PE=4 SV=1)

HSP 1 Score: 431.0 bits (1107), Expect = 3.5e-117
Identity = 221/264 (83.71%), Postives = 236/264 (89.39%), Query Frame = 0


Query: 1   MSSMALFSPSSHLSTLSPSSHHTNHFSFRPFASLRTRNPSSSSFFTIRATADNGSGVSGG 60
           MSSMALFSP S LS+LSPSSHH  HF  RPF+SLR+RNPSS         ADNG+G+SGG
Sbjct: 1   MSSMALFSPPSRLSSLSPSSHHRTHFPSRPFSSLRSRNPSS------WVAADNGAGISGG 60

Query: 61  SATVAVETPVEQKDPEPAKAVLEEQESLAGTNGSVAAAEEVEVVGKFEDPKWVNGTWDLN 120
           S  VAVE+ V QKDPEP   V+E+QE LA TNGSVAA EEV VV KFEDPKWVNGTWDLN
Sbjct: 61  S--VAVESAVVQKDPEP---VVEKQEILAETNGSVAAVEEVVVVSKFEDPKWVNGTWDLN 120

Query: 121 QFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPEAEL 180
           QF+K+GSTDWDAVIDAEARRRKWLENNPESSSNEDPV+FDTSIVPWWAWIKRYHLPEAE+
Sbjct: 121 QFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVLFDTSIVPWWAWIKRYHLPEAEI 180

Query: 181 LNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETIKKLI 240
           LNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLF+AVVGVLLIRKNEDIET+KKLI
Sbjct: 181 LNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFIAVVGVLLIRKNEDIETLKKLI 240

Query: 241 DETTFYDKQWQATWQDETSGSGKM 265
           DETTFYDKQWQATWQDET GSGK+
Sbjct: 241 DETTFYDKQWQATWQDETKGSGKV 253

[Close]

BLAST of HG10003087 vs. TAIR 10
Match: AT4G17600.1 (Chlorophyll A-B binding family protein )

HSP 1 Score: 287.3 bits (734), Expect = 1.2e-77
Identity = 155/267 (58.05%), Postives = 191/267 (71.54%), Query Frame = 0


Query: 4   MALFSPSSHLSTLSPSSHHTNHFSFRPFASLRTRNPSSSSFFTIRATADNGSGVSGGSAT 63
           MALFSP    S+L  + +    FSF   +S R      S     RA++D+GS     + +
Sbjct: 1   MALFSPPISSSSLQ-NPNFIPKFSFSLLSSNR-----FSLLSVTRASSDSGSTSPTAAVS 60

Query: 64  VAVETPVE--QKDPEPAKAVLEEQESLAGTNGSVAAAE--EVEVVGKFEDPKWVNGTWDL 123
           V    PVE   K+P  +   ++++E+    N +V   E    E V KF+D +W+NGTWDL
Sbjct: 61  VEAPEPVEVIVKEPPQSTPAVKKEETATAKNVAVEGEEMKTTESVVKFQDARWINGTWDL 120

Query: 124 NQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPEAE 183
            QF+K+G TDWD+VI AEA+RRKWLE NPE++SN++PV+FDTSI+PWWAWIKRYHLPEAE
Sbjct: 121 KQFEKDGKTDWDSVIVAEAKRRKWLEENPETTSNDEPVLFDTSIIPWWAWIKRYHLPEAE 180

Query: 184 LLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETIKKL 243
           LLNGRAAM+GFFMAYFVDSLTGVGLV QMGNFFCKTLLFVAV GVL IRKNED++ +K L
Sbjct: 181 LLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVLFIRKNEDVDKLKNL 240

Query: 244 IDETTFYDKQWQATWQ---DETSGSGK 264
            DETT YDKQWQA W+   DE+ GS K
Sbjct: 241 FDETTLYDKQWQAAWKNDDDESLGSKK 261

[Close]

BLAST of HG10003087 vs. TAIR 10
Match: AT5G47110.1 (Chlorophyll A-B binding family protein )

HSP 1 Score: 273.9 bits (699), Expect = 1.4e-73
Identity = 150/270 (55.56%), Postives = 186/270 (68.89%), Query Frame = 0


Query: 3   SMALFSPSSHLSTLSPSSHHTNHFSFRPFASLRTRNPSSSSFFTI-RATADNGSGVSGGS 62
           SMALFSP        P S    + +  P  S    +    S  ++ RA++DNG+      
Sbjct: 4   SMALFSP--------PISSSLQNPNLIPKISTSLLSTKRFSLISVPRASSDNGT------ 63

Query: 63  ATVAVETPVEQKDPEPAKAVLEE-------QESLAGTNGSV---AAAEEVEVVGKFEDPK 122
                 +PV +  P+PA   +EE       + S A  NG+V   A     E V K+++ K
Sbjct: 64  -----TSPVVE-IPKPASVAVEEVPVKSPAESSSASENGAVGGEATDSSTETVIKYQNAK 123

Query: 123 WVNGTWDLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIK 182
           WVNGTWDL QF+K+G TDWD+VI +EA+RRKWLE+NPE++SN++ VVFDTSI+PWWAW+K
Sbjct: 124 WVNGTWDLKQFEKDGKTDWDSVIVSEAKRRKWLEDNPETTSNDELVVFDTSIIPWWAWMK 183

Query: 183 RYHLPEAELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNE 242
           RYHLPEAELLNGRAAM+GFFMAYFVDSLTGVGLV QMGNFFCKTLLFVAV GVL IRKNE
Sbjct: 184 RYHLPEAELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVLFIRKNE 243

Query: 243 DIETIKKLIDETTFYDKQWQATWQDETSGS 262
           D++ +K L DETT YDKQWQA W++  S +
Sbjct: 244 DLDKLKDLFDETTLYDKQWQAAWKEPDSST 253

The following BLAST results are available for this feature:

BLAST of HG10003087 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906355.1	3.0e-139	95.45	light-harvesting complex-like protein 3 isotype 1, chloroplastic [Benincasa hisp...	[more]
XP_004147237.1	1.3e-134	94.01	light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucumis sativu...	[more]
XP_008448777.1	2.8e-132	92.94	PREDICTED: uncharacterized protein LOC103490842 [Cucumis melo]	[more]
KAA0041046.1	8.0e-132	92.57	uncharacterized protein E6C27_scaffold477G00170 [Cucumis melo var. makuwa] >TYK1...	[more]
XP_022965154.1	5.6e-117	84.09	light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita maxi...	[more]

BLAST of HG10003087 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SYX1	1.7e-76	58.05	Light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Arabidopsis ...	[more]
Q6NKS4	1.9e-72	55.56	Light-harvesting complex-like protein 3 isotype 2, chloroplastic OS=Arabidopsis ...	[more]

BLAST of HG10003087 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5D8	6.4e-135	94.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017160 PE=4 SV=1	[more]
A0A1S3BLD8	1.3e-132	92.94	uncharacterized protein LOC103490842 OS=Cucumis melo OX=3656 GN=LOC103490842 PE=...	[more]
A0A5A7TG76	3.9e-132	92.57	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1HQ78	2.7e-117	84.09	light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Cucurbita ma...	[more]
A0A6J1EC24	3.5e-117	83.71	light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Cucurbita mo...	[more]

BLAST of HG10003087 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17600.1	1.2e-77	58.05	Chlorophyll A-B binding family protein	[more]
AT5G47110.1	1.4e-73	55.56	Chlorophyll A-B binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR14154:SF87	LIGHT-HARVESTING COMPLEX-LIKE PROTEIN 3 ISOTYPE 1, CHLOROPLASTIC-RELATED	coord: 36..262
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 36..262
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 136..213

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10003087.1	HG10003087.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding