HG10003078 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10003078
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionLoricrin-like
LocationChr11: 17126318 .. 17126593 (-)
RNA-Seq ExpressionHG10003078
SyntenyHG10003078
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGGCCAATTCTTGGCACCAATGGCAGTGGCTTAGCTGACGTCACCTTGTTCAATTCTGGTGGCTTATTTTTGCTTTCAACCATCCTTCTATCCATCTCTCTCATATCAATGGTCGTATTTGCTTGCAGTGACTCTCATAAGAAAAAGAAAAAGAAAAAATATGGCGGCGGGGCTGCAGAGCAATTGGTGGGGGAGGCTGTGGCAACGGCGGTGGAGGCTGTGGTGTCGGCGGACGGTGGAGGAGGCTGTGGTGGTGGAGGTGGATGTTAA

mRNA sequence

ATGGGAAGGCCAATTCTTGGCACCAATGGCAGTGGCTTAGCTGACGTCACCTTGTTCAATTCTGGTGGCTTATTTTTGCTTTCAACCATCCTTCTATCCATCTCTCTCATATCAATGGTCGTATTTGCTTGCAGTGACTCTCATAAGAAAAAGAAAAAGAAAAAATATGGCGGCGGGGCTGCAGAGCAATTGGTGGGGGAGGCTGTGGCAACGGCGGTGGAGGCTGTGGTGTCGGCGGACGGTGGAGGAGGCTGTGGTGGTGGAGGTGGATGTTAA

Coding sequence (CDS)

ATGGGAAGGCCAATTCTTGGCACCAATGGCAGTGGCTTAGCTGACGTCACCTTGTTCAATTCTGGTGGCTTATTTTTGCTTTCAACCATCCTTCTATCCATCTCTCTCATATCAATGGTCGTATTTGCTTGCAGTGACTCTCATAAGAAAAAGAAAAAGAAAAAATATGGCGGCGGGGCTGCAGAGCAATTGGTGGGGGAGGCTGTGGCAACGGCGGTGGAGGCTGTGGTGTCGGCGGACGGTGGAGGAGGCTGTGGTGGTGGAGGTGGATGTTAA

Protein sequence

MGRPILGTNGSGLADVTLFNSGGLFLLSTILLSISLISMVVFACSDSHKKKKKKKYGGGAAEQLVGEAVATAVEAVVSADGGGGCGGGGGC
Homology
BLAST of HG10003078 vs. NCBI nr
Match: KAG6603229.1 (hypothetical protein SDJN03_03838, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 87.8 bits (216), Expect = 5.2e-14
Identity = 49/91 (53.85%), Postives = 61/91 (67.03%), Query Frame = 0

Query: 1  MGRPILGTNGSGLADVTLFNSGGLFLLSTILLSISLISMVVFACSDSHKKKKKKKYGGGA 60
          MGRPI   +G GL DVTLF+SGGL LL+TIL+S+SL+SM++FAC DS +K K+K+ GGG 
Sbjct: 1  MGRPIPAADGGGLGDVTLFSSGGLLLLATILMSLSLVSMIIFACGDSSRKNKRKRNGGGG 60

Query: 61 AEQLVGEAVATAVEAVVSADGGGGCGGGGGC 92
                           +  GGGGCGGGGGC
Sbjct: 61 G----------------AGCGGGGCGGGGGC 75

BLAST of HG10003078 vs. NCBI nr
Match: KAG6603228.1 (hypothetical protein SDJN03_03837, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 78.2 bits (191), Expect = 4.1e-11
Identity = 47/90 (52.22%), Postives = 57/90 (63.33%), Query Frame = 0

Query: 1  MGRPILGTNGSGLADVTLFNSGGLFLLSTILLSISLISMVVFACSDSHKKKKKKKYGGGA 60
          MGR I   +G GL DVTLF+SGGL LL+T+LLS+SL+SM++FAC DS    K+K+ GGG 
Sbjct: 1  MGRSIPAADGGGLGDVTLFSSGGLLLLATVLLSLSLVSMIIFACGDSSSDNKRKRNGGGC 60

Query: 61 AEQLVGEAVATAVEAVVSADGGGGCGGGGG 91
               G              GGGGCGGGGG
Sbjct: 61 GGGGGGGCGG-------DVGGGGGCGGGGG 83

BLAST of HG10003078 vs. NCBI nr
Match: KAG6604774.1 (hypothetical protein SDJN03_02091, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.6 bits (166), Expect = 3.3e-08
Identity = 48/94 (51.06%), Postives = 55/94 (58.51%), Query Frame = 0

Query: 1  MGRPILGT--NGSGLADVTLFNSGGLFLLSTILLSISLISMVVFACSDSHKKKKKKKYGG 60
          MGRPIL     G G  DVTL +SGGLFLLS ILLSISL+SM++FAC +S+  K+K   GG
Sbjct: 1  MGRPILAAAGGGGGFQDVTLVSSGGLFLLSAILLSISLVSMIIFACGNSNDPKRKDGGGG 60

Query: 61 GAAEQLVGEAVATAVEAVVSADGGGGCGGG-GGC 92
                                GGGGCGGG GGC
Sbjct: 61 CGGG---------------DGGGGGGCGGGCGGC 79

BLAST of HG10003078 vs. NCBI nr
Match: ONI16667.1 (hypothetical protein PRUPE_3G114200 [Prunus persica])

HSP 1 Score: 63.9 bits (154), Expect = 8.1e-07
Identity = 42/80 (52.50%), Postives = 49/80 (61.25%), Query Frame = 0

Query: 20  NSGGLFLLSTILLSISLISMVVFACSD---SHKKKKKKKYGGGAAEQLVGEA-----VAT 79
           NSGG+ LL  IL+S+SLISMV+FAC D   S KK+ + + GGG A    G A      A 
Sbjct: 23  NSGGIILLCMILMSLSLISMVIFACGDDEGSSKKRYRNRGGGGGAAAGAGAAGAGAGAAA 82

Query: 80  AVEAVVSADGGGGCGGGGGC 92
           A  A     GGGGCGGGGGC
Sbjct: 83  AAAAAACGGGGGGCGGGGGC 102

BLAST of HG10003078 vs. NCBI nr
Match: ONI16668.1 (hypothetical protein PRUPE_3G114200 [Prunus persica])

HSP 1 Score: 63.9 bits (154), Expect = 8.1e-07
Identity = 42/80 (52.50%), Postives = 49/80 (61.25%), Query Frame = 0

Query: 20  NSGGLFLLSTILLSISLISMVVFACSD---SHKKKKKKKYGGGAAEQLVGEA-----VAT 79
           NSGG+ LL  IL+S+SLISMV+FAC D   S KK+ + + GGG A    G A      A 
Sbjct: 23  NSGGIILLCMILMSLSLISMVIFACGDDEGSSKKRYRNRGGGGGAAAGAGAAGAGAGAAA 82

Query: 80  AVEAVVSADGGGGCGGGGGC 92
           A  A     GGGGCGGGGGC
Sbjct: 83  AAAAAACGGGGGGCGGGGGC 102

BLAST of HG10003078 vs. ExPASy TrEMBL
Match: A0A251PYM5 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G114200 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.9e-07
Identity = 42/80 (52.50%), Postives = 49/80 (61.25%), Query Frame = 0

Query: 20  NSGGLFLLSTILLSISLISMVVFACSD---SHKKKKKKKYGGGAAEQLVGEA-----VAT 79
           NSGG+ LL  IL+S+SLISMV+FAC D   S KK+ + + GGG A    G A      A 
Sbjct: 23  NSGGIILLCMILMSLSLISMVIFACGDDEGSSKKRYRNRGGGGGAAAGAGAAGAGAGAAA 82

Query: 80  AVEAVVSADGGGGCGGGGGC 92
           A  A     GGGGCGGGGGC
Sbjct: 83  AAAAAACGGGGGGCGGGGGC 102

BLAST of HG10003078 vs. ExPASy TrEMBL
Match: A0A251PYS9 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G114200 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.9e-07
Identity = 42/80 (52.50%), Postives = 49/80 (61.25%), Query Frame = 0

Query: 20  NSGGLFLLSTILLSISLISMVVFACSD---SHKKKKKKKYGGGAAEQLVGEA-----VAT 79
           NSGG+ LL  IL+S+SLISMV+FAC D   S KK+ + + GGG A    G A      A 
Sbjct: 23  NSGGIILLCMILMSLSLISMVIFACGDDEGSSKKRYRNRGGGGGAAAGAGAAGAGAGAAA 82

Query: 80  AVEAVVSADGGGGCGGGGGC 92
           A  A     GGGGCGGGGGC
Sbjct: 83  AAAAAACGGGGGGCGGGGGC 102

BLAST of HG10003078 vs. ExPASy TrEMBL
Match: A0A6J5WYX6 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS20264 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.6e-06
Identity = 39/71 (54.93%), Postives = 45/71 (63.38%), Query Frame = 0

Query: 20 NSGGLFLLSTILLSISLISMVVFACSDSHKKKKKKKYGGGAAEQLVGEAVATAVEAVVSA 79
          NSGG+FLL  IL+S+SLISMV+FAC D  +   KK+YGGG      G A A         
Sbjct: 23 NSGGIFLLCMILMSLSLISMVIFACGDD-EGSSKKRYGGGGG----GAAAAAGGGGGCGG 82

Query: 80 DGGGGCGGGGG 91
           GGGGCGGGGG
Sbjct: 83 GGGGGCGGGGG 88

BLAST of HG10003078 vs. ExPASy TrEMBL
Match: A0A5N5GEI7 (Loricrin-like OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_019934 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.6e-05
Identity = 43/95 (45.26%), Postives = 50/95 (52.63%), Query Frame = 0

Query: 1  MGRPILGTNGSGLADVTL----FNSGGLFLLSTILLSISLISMVVFACSDSHKKKKKKKY 60
          MGR  +G  G    +V +     NSGGL LL  IL+S+SLISMV+FAC D HK    K+ 
Sbjct: 1  MGRTYVGVGGGHAGEVGIVMPDHNSGGLLLLCMILMSLSLISMVIFACGD-HKGSNNKRR 60

Query: 61 GGGAAEQLVGEAVATAVEAVVSADGGGGCGGGGGC 92
          GGGAA                   GGGGCGGG  C
Sbjct: 61 GGGAA----------------CGGGGGGCGGGTAC 78

BLAST of HG10003078 vs. ExPASy TrEMBL
Match: A0A251PYL3 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G114200 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.8e-04
Identity = 40/76 (52.63%), Postives = 48/76 (63.16%), Query Frame = 0

Query: 20 NSGGLFLLSTILLSISLISMVVFACSD---SHKKKKKKKYGGGAAEQLVGEAVATA-VEA 79
          NSGG+ LL  IL+S+SLISMV+FAC D   S KK+ + + GGG A    G A A A   A
Sbjct: 23 NSGGIILLCMILMSLSLISMVIFACGDDEGSSKKRYRNRGGGGGAAAGAGAAGAGAGAAA 82

Query: 80 VVSADGGGGCGGGGGC 92
            +A   GG GGGGGC
Sbjct: 83 AAAAAACGGGGGGGGC 98

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6603229.15.2e-1453.85hypothetical protein SDJN03_03838, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6603228.14.1e-1152.22hypothetical protein SDJN03_03837, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6604774.13.3e-0851.06hypothetical protein SDJN03_02091, partial [Cucurbita argyrosperma subsp. sorori... [more]
ONI16667.18.1e-0752.50hypothetical protein PRUPE_3G114200 [Prunus persica][more]
ONI16668.18.1e-0752.50hypothetical protein PRUPE_3G114200 [Prunus persica][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A251PYM53.9e-0752.50Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G114200 PE=4 SV=1[more]
A0A251PYS93.9e-0752.50Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G114200 PE=4 SV=1[more]
A0A6J5WYX65.6e-0654.93Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS20264 PE=4 S... [more]
A0A5N5GEI71.6e-0545.26Loricrin-like OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_019934 P... [more]
A0A251PYL31.8e-0452.63Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G114200 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35420OS02G0198500 PROTEINcoord: 1..90

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10003078.1HG10003078.1mRNA