HG10003031 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10003031
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionNeprosin domain-containing protein
LocationChr11: 16522478 .. 16524321 (+)
RNA-Seq ExpressionHG10003031
SyntenyHG10003031
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTCCAAAGCAATTTGGTTGGTAACAGTTCTCTTCGTTTGTTTAAACTCTAAACATACTCAAGCTTATGATCATTTAAACATCTCAAGAGAAGAATATTTGGAGTTCGAAAGACAACTCAAACTTCTCAACAAGCCATCCATCACAACATTTCAGGTTCAAATTGTACATATATTTAATTATTCTCACAACTTTTTTTTATAACTTATATACTAATTCATCAAATACATATTATTATACCTTTTTATTTTTTGATTTTGGAGGAAAATTTGAACATTTGGAGGAAAACAGTAGATTTAACATTTTTGTTTGTTTTGAATTATCTCCCCAAATTTCCATATTTAAAAAAATAATAAAGAAAAATTTTGCCATTTTGGTGCCAAACTAGGTTTAGAGGTTAGTTTCTAATTGGTCCCTAAATTTTGAATCTATTTCTAATTGGCCCATAAGTTTTAAAATATTACAATTTTACCCTCGAGTTTAATTTTCACATTTGGTCCTCTTATGTTTCAACATAGGGACAAAAAAAATTAAATTCAAAACTCTAGAGAAAAAGTGTAATATTTTGAAATCTAGAGACCGAATGAAAAATAGAACCAAAACCTAGAGGTTAAAGACAAAAAATAATGTATTTTTTCATGAAAATATGTATTTTATATTGCTTTAATATATTTTTGCCCTAAATATTGCTTTAATAGATAATGTAGAACTAGAACCATCTAAGAAATTTAATTTGTTGACTGTTTGAGTTTAGACGAAGGAGGGAGATATTATTGACTGTGTTGACATCAATAAACAACCTGCTCTTGATCATCCATCACTAATAAATCACAAAGTTCAGGTTATTTATATAATTATATTCATGCATCTACTTCTCTATTTTATCTGATCTTATTATATTTTGATATTTTTTAATGATTTAATTTTGTATATAAAAATTATGAACAATCAAAAGAACATGTTTAGGAGCGATTTCGAAACTCACTCTTGTCATGTTTAAAAATAACTTTGAAACATGTTTTTAATCATTCAATAATTAACTATCATTTTAAACGTCAATGATTTGATTCTAAATTTACTATTATTTTTAAGGTTTAGCTAAAAGAAATCGCTGCTAGATAGAAACTGAGGCTAAATGGGCTCTCACAGACATTTTATTTAATACAAAGGACTTAATTATTATTTATGAATGTACATGGGAGTGATAAATAACATAAATACAATGAAATTAAAGATTAAAGAATGATTAAAAGAAATTTTTCACTGTCTATCAAACGATAGAATTCTATCAATAAAATTTTTCTATATTTGTAAATAGTTTGTCTTATTTTTCTATATTTGAAAACAACCGTTTAACATTATATATTTGGTTTATCCTTTATTTCCTTAGTTTTTTTTTATTATTTTTATTTAAATCAATATAACAATAGTGATCGCACATGTGAACTTTAACCTAGATACATATAACAAATGTTCAACCTCAATATTGGTACTGTAAAAACTTTTTATCTTCCTCAATATTTGGCTACCTCTTACATATCATTTATATATTATTTCTGTAGGTACATAATAATTATGTTTTCTGGTTTTATCTATTATTACAGCTTCGACCAAATAGATCATATCTAAGAGTATCATCTCAATCAGAATATAACTCAATCATAAGTAACAGCACCGAACAATCTTGTCTTGCTGGGTCTGTTCCCATTAGAAGAACTCTAAAGAAAGATTTAATTAGGTTAAAGTCTCTATCATCCAAACAAATAATAATGACTGATGTGGAAGAAGATAGTACTGCTAGTACTCTACTCCAATCAAGTTCCCTTATGATAAAAATGTAA

mRNA sequence

ATGAGTTCCAAAGCAATTTGGTTGGTAACAGTTCTCTTCGTTTGTTTAAACTCTAAACATACTCAAGCTTATGATCATTTAAACATCTCAAGAGAAGAATATTTGGAGTTCGAAAGACAACTCAAACTTCTCAACAAGCCATCCATCACAACATTTCAGCTTCGACCAAATAGATCATATCTAAGAGTATCATCTCAATCAGAATATAACTCAATCATAAGTAACAGCACCGAACAATCTTGTCTTGCTGGGTCTGTTCCCATTAGAAGAACTCTAAAGAAAGATTTAATTAGGTTAAAGTCTCTATCATCCAAACAAATAATAATGACTGATGTGGAAGAAGATAGTACTGCTAGTACTCTACTCCAATCAAGTTCCCTTATGATAAAAATGTAA

Coding sequence (CDS)

ATGAGTTCCAAAGCAATTTGGTTGGTAACAGTTCTCTTCGTTTGTTTAAACTCTAAACATACTCAAGCTTATGATCATTTAAACATCTCAAGAGAAGAATATTTGGAGTTCGAAAGACAACTCAAACTTCTCAACAAGCCATCCATCACAACATTTCAGCTTCGACCAAATAGATCATATCTAAGAGTATCATCTCAATCAGAATATAACTCAATCATAAGTAACAGCACCGAACAATCTTGTCTTGCTGGGTCTGTTCCCATTAGAAGAACTCTAAAGAAAGATTTAATTAGGTTAAAGTCTCTATCATCCAAACAAATAATAATGACTGATGTGGAAGAAGATAGTACTGCTAGTACTCTACTCCAATCAAGTTCCCTTATGATAAAAATGTAA

Protein sequence

MSSKAIWLVTVLFVCLNSKHTQAYDHLNISREEYLEFERQLKLLNKPSITTFQLRPNRSYLRVSSQSEYNSIISNSTEQSCLAGSVPIRRTLKKDLIRLKSLSSKQIIMTDVEEDSTASTLLQSSSLMIKM
Homology
BLAST of HG10003031 vs. NCBI nr
Match: XP_022145288.1 (uncharacterized protein LOC111014777 [Momordica charantia])

HSP 1 Score: 81.6 bits (200), Expect = 5.4e-12
Identity = 60/138 (43.48%), Postives = 78/138 (56.52%), Query Frame = 0

Query: 1   MSSKAI-WLVTVLFVCLNSKHTQAYDHLNISREEYLEFERQLKLLNKPSITTFQ------ 60
           M+SKAI WL+ VL + LN K + A+D  N+SREE LE E QLKLLN+P ITTFQ      
Sbjct: 1   MASKAIMWLMIVLLLHLNCKGSLAFDS-NLSREEELELEMQLKLLNRPFITTFQTEEGDI 60

Query: 61  ----------------LRPNRSYLRVS---------SQSEYNSIISNSTEQSCLAGSVPI 107
                           L+ ++   R S         S S  +    N+  ++C AG VPI
Sbjct: 61  IDCVDINKQPALDHPSLKSHKIQTRPSTYPFGLSKDSSSSRDKSFINNNNRACPAGYVPI 120

BLAST of HG10003031 vs. NCBI nr
Match: XP_031738649.1 (uncharacterized protein LOC116402744 [Cucumis sativus] >KAE8650030.1 hypothetical protein Csa_009857 [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 5.0e-10
Identity = 57/136 (41.91%), Postives = 69/136 (50.74%), Query Frame = 0

Query: 3   SKAIWLVTVLFVCLNSKHTQAYDHLNISREEYLEFERQLKLLNKPSITTFQLRP------ 62
           SKA  LV V FVC N K   A  + N+SREE LE ERQLKLLNKP I T++ +       
Sbjct: 6   SKATCLVIVFFVCFNCKFNHA-SNPNLSREEDLEIERQLKLLNKPFIKTYKTKEGDIIDC 65

Query: 63  ---------------------------NRSYLRVSSQSEYNSIISNSTE-QSCLAGSVPI 105
                                      ++ +   SSQS    + SN+   + C  G VPI
Sbjct: 66  VDINKQPALDHPLLKNHKVQTLPSEFVSKLFKEDSSQSNNGILTSNNNNGEGCPVGFVPI 125

BLAST of HG10003031 vs. NCBI nr
Match: TYK11502.1 (neprosin 2 [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 6.8e-07
Identity = 49/129 (37.98%), Postives = 63/129 (48.84%), Query Frame = 0

Query: 11  VLFVCLNSKHTQAYDHLNISREEYLEFERQLKLLNKPSITTFQLRP-------------- 70
           + FVC N K   A  + N+SREE LE ERQLKLLNKP I T++ +               
Sbjct: 211 LFFVCFNCKFNHA-SNPNLSREEELEIERQLKLLNKPFIKTYKTKEGDIIDCVDINKQPA 270

Query: 71  -------------------NRSYLRVSSQSEYNSII--SNSTEQSCLAGSVPIRRTLKKD 105
                              ++ +   S     N I+  +N+  + C  G VPIRRTLK+D
Sbjct: 271 LDHPLLKNHKVQTLPSEFISKLFKEDSISQSNNGILTSNNNNGEGCPIGFVPIRRTLKED 330

BLAST of HG10003031 vs. NCBI nr
Match: XP_022145287.1 (uncharacterized protein LOC111014775 [Momordica charantia])

HSP 1 Score: 61.2 bits (147), Expect = 7.5e-06
Identity = 36/54 (66.67%), Postives = 42/54 (77.78%), Query Frame = 0

Query: 1  MSSKAI-WLVTVLFVCLNSKHTQAYDHLNISREEYLEFERQLKLLNKPSITTFQ 54
          M+SKAI WL+ VL + LN K + A+D  N+S EE LEFE QLKLLNKPSITTFQ
Sbjct: 1  MASKAIMWLMIVLLLHLNCKGSLAFDS-NLSMEEELEFEMQLKLLNKPSITTFQ 53

BLAST of HG10003031 vs. NCBI nr
Match: POO01263.1 (hypothetical protein TorRG33x02_030170 [Trema orientale])

HSP 1 Score: 58.9 bits (141), Expect = 3.7e-05
Identity = 37/106 (34.91%), Postives = 62/106 (58.49%), Query Frame = 0

Query: 7   WLVTVLFV---CLNSKHTQAYDHLNISREEYLEFERQLKLLNKPSITTFQLRPNRSYLRV 66
           W+V +LFV   CL+           ++++E LE E+QLKLLNKP++ + +++P     R+
Sbjct: 5   WVVLLLFVVCFCLSYNGGAEGGPSRLTKKEELEIEKQLKLLNKPAVKSIKMKPTSPPKRM 64

Query: 67  SSQSEYNSIISNSTE-----QSCLAGSVPIRRTLKKDLIRLKSLSS 105
           + +     I+    E     +SC  G+VPI++T K+DLIR K L++
Sbjct: 65  NDKESSVVIVQPLVEIALKGESCPIGTVPIKKTTKEDLIREKMLNA 110

BLAST of HG10003031 vs. ExPASy TrEMBL
Match: A0A6J1CVJ6 (uncharacterized protein LOC111014777 OS=Momordica charantia OX=3673 GN=LOC111014777 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.6e-12
Identity = 60/138 (43.48%), Postives = 78/138 (56.52%), Query Frame = 0

Query: 1   MSSKAI-WLVTVLFVCLNSKHTQAYDHLNISREEYLEFERQLKLLNKPSITTFQ------ 60
           M+SKAI WL+ VL + LN K + A+D  N+SREE LE E QLKLLN+P ITTFQ      
Sbjct: 1   MASKAIMWLMIVLLLHLNCKGSLAFDS-NLSREEELELEMQLKLLNRPFITTFQTEEGDI 60

Query: 61  ----------------LRPNRSYLRVS---------SQSEYNSIISNSTEQSCLAGSVPI 107
                           L+ ++   R S         S S  +    N+  ++C AG VPI
Sbjct: 61  IDCVDINKQPALDHPSLKSHKIQTRPSTYPFGLSKDSSSSRDKSFINNNNRACPAGYVPI 120

BLAST of HG10003031 vs. ExPASy TrEMBL
Match: A0A5D3CJM0 (Neprosin 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001660 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.3e-07
Identity = 49/129 (37.98%), Postives = 63/129 (48.84%), Query Frame = 0

Query: 11  VLFVCLNSKHTQAYDHLNISREEYLEFERQLKLLNKPSITTFQLRP-------------- 70
           + FVC N K   A  + N+SREE LE ERQLKLLNKP I T++ +               
Sbjct: 211 LFFVCFNCKFNHA-SNPNLSREEELEIERQLKLLNKPFIKTYKTKEGDIIDCVDINKQPA 270

Query: 71  -------------------NRSYLRVSSQSEYNSII--SNSTEQSCLAGSVPIRRTLKKD 105
                              ++ +   S     N I+  +N+  + C  G VPIRRTLK+D
Sbjct: 271 LDHPLLKNHKVQTLPSEFISKLFKEDSISQSNNGILTSNNNNGEGCPIGFVPIRRTLKED 330

BLAST of HG10003031 vs. ExPASy TrEMBL
Match: A0A6J1CW60 (uncharacterized protein LOC111014775 OS=Momordica charantia OX=3673 GN=LOC111014775 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.6e-06
Identity = 36/54 (66.67%), Postives = 42/54 (77.78%), Query Frame = 0

Query: 1  MSSKAI-WLVTVLFVCLNSKHTQAYDHLNISREEYLEFERQLKLLNKPSITTFQ 54
          M+SKAI WL+ VL + LN K + A+D  N+S EE LEFE QLKLLNKPSITTFQ
Sbjct: 1  MASKAIMWLMIVLLLHLNCKGSLAFDS-NLSMEEELEFEMQLKLLNKPSITTFQ 53

BLAST of HG10003031 vs. ExPASy TrEMBL
Match: A0A2P5FTZ0 (Neprosin domain-containing protein OS=Trema orientale OX=63057 GN=TorRG33x02_030170 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.8e-05
Identity = 37/106 (34.91%), Postives = 62/106 (58.49%), Query Frame = 0

Query: 7   WLVTVLFV---CLNSKHTQAYDHLNISREEYLEFERQLKLLNKPSITTFQLRPNRSYLRV 66
           W+V +LFV   CL+           ++++E LE E+QLKLLNKP++ + +++P     R+
Sbjct: 5   WVVLLLFVVCFCLSYNGGAEGGPSRLTKKEELEIEKQLKLLNKPAVKSIKMKPTSPPKRM 64

Query: 67  SSQSEYNSIISNSTE-----QSCLAGSVPIRRTLKKDLIRLKSLSS 105
           + +     I+    E     +SC  G+VPI++T K+DLIR K L++
Sbjct: 65  NDKESSVVIVQPLVEIALKGESCPIGTVPIKKTTKEDLIREKMLNA 110

BLAST of HG10003031 vs. ExPASy TrEMBL
Match: A0A6J1CVW9 (uncharacterized protein LOC111014774 OS=Momordica charantia OX=3673 GN=LOC111014774 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 6.9e-05
Identity = 31/56 (55.36%), Postives = 36/56 (64.29%), Query Frame = 0

Query: 1  MSSKA-IWLVTVLFVCLNSKHTQAYDHLNISREEYLEFERQLKLLNKPSITTFQLR 56
          M SKA  W   +LFV   S H     H N+SREE LE E QLKLLN+PSITTF+ +
Sbjct: 1  MDSKARTWFAILLFVVCLSYHCSQASHSNLSREEELELEEQLKLLNRPSITTFETK 56

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022145288.15.4e-1243.48uncharacterized protein LOC111014777 [Momordica charantia][more]
XP_031738649.15.0e-1041.91uncharacterized protein LOC116402744 [Cucumis sativus] >KAE8650030.1 hypothetica... [more]
TYK11502.16.8e-0737.98neprosin 2 [Cucumis melo var. makuwa][more]
XP_022145287.17.5e-0666.67uncharacterized protein LOC111014775 [Momordica charantia][more]
POO01263.13.7e-0534.91hypothetical protein TorRG33x02_030170 [Trema orientale][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CVJ62.6e-1243.48uncharacterized protein LOC111014777 OS=Momordica charantia OX=3673 GN=LOC111014... [more]
A0A5D3CJM03.3e-0737.98Neprosin 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001660 PE... [more]
A0A6J1CW603.6e-0666.67uncharacterized protein LOC111014775 OS=Momordica charantia OX=3673 GN=LOC111014... [more]
A0A2P5FTZ01.8e-0534.91Neprosin domain-containing protein OS=Trema orientale OX=63057 GN=TorRG33x02_030... [more]
A0A6J1CVW96.9e-0555.36uncharacterized protein LOC111014774 OS=Momordica charantia OX=3673 GN=LOC111014... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10003031.1HG10003031.1mRNA