HG10003013 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10003013
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr11: 16383369 .. 16386067 (-)
RNA-Seq ExpressionHG10003013
SyntenyHG10003013
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAGTGAGGCAAAAACCACTCAATTTCTCAGGTTTTAATCCCCCAATTTCTTTCCTTCTACTCTTATGATATGCTTTAATCTTACTTTCCTATTGTTTATTATTTAAGTTTAATTACTTTTACCATTTTTTTACTTTTTAAATATAATATTATATACTTTTTCATGTTTTAAATGATTGAAGATCTTGAAAAAATAAATTAGAGGTTCCAACTCTCAAACTTAATCCAAATAGTTATATTTGTAGAGATTATAAGGTGCTTCCTAGAATTTCATATAATATTTTATTCTTATGTTTTCATGTAAATTAAAAATAAATTTTATATATCGGAAATTTTCACCGATAAAAAAAATGTAAAACTATTTTTAAAAAATAACAAAAGAAAAACGGATAGATATTGATGGACTTCTATCAGCATCTACTAGTGATAGACTCTATCATTTCTATCACTGATAGACACTGATAGACTTCTATCAGCGTTTGTCTATCAACGTTTATCACAACTATCTAAAAATTTTATTATTTTGTGTAAATAGCTTTCTTTATTTTTCTATTTTTAAAATTTTTTCTAAAAAAAAGTTATAGATATATAATTTGTAAAAAATAAAGACATATCCAATACTCTAGACTATGTAAGATTCAATTATATATCCGGCTAAACTTTAAAAAGTTTTTTTTTTTCCTTTCAGTTTTGAAATTTGTTCTAATTAATATGTAAAAAGTAGAAGATATTTGTGACATAGTTTACAACTTTATTTACATACATTGAATGTATATTGTAGTTGATGTAAAGAATTGATTATTTAAATAATTCTAAAAATATCTTTTAAGGTAAAATAAATAGTAATAACGATCTTAAATCTTATATATAGTTGTAAATAATATATGACGCCTTCTAAAAACGTAAACTTTCAAAGTTTAAGGATATTTACTAACCAAATTTTAAAATTTAAAAGGTGAAAATGAAAATTTTTGAAATCAACAACCAGGGTAACTCTAAAGTTTAGGAATATTTATTATATTTTAACTATATGTGTGTGTTTGTATAAATATATATATTTCATGGTATTGGATGGCATATTAGAGTGTCCTTGAAATTTTAAAAATAATATATCTATTTTAGAAAGTTTAATGGGTGCCATATATTTAAAATTTAGGAGATATCTATATGTCACAAATATAGTTTGTTTAAAGAAAAACAAATGTAACCTATTCTTATATTCTTTTACCTAGAGTAATTAAGTCTGGTTTGATAACTATTTATGTTTGGTTTTTGAAATTTTTGTTTGTTTTCTCTCATTTCTTATTTATGGTGTTCGTATTTTCTATACAAACATTTGAATTTTTAGTCAATTTTCAAAATAAATAAATAAATAAATAAATAAACCACACAAAAAATAATAGTTTTTTTTTTTTTTTTTTTGCAATTAAGTAGTGTGGGGAGTGAGGTGGAAAAGGGAGGACTTGGAAAGGCTTATTGCAAATGTGGAGAAGGATGGAAATGTGAGATCAAAAGAACTCAAGGCCCCGATGCTGGCAACACCTTCGTTAACTGTGGCAACAACTGCATTTGTATAATGTAAGTGAACCCCTCATATATTCATTTTCTTAACTAAATCGATCGGTTTTAGATCTAAGAGTTTTAGCTGATGAGTTAAAATAAATTTGATTATTTAAGTTTAAATATGATCAATACGAGGCAAAATACGAGGATTTGTTTTGAAAAGAATATATCAACATTATAATAAGAATTTGAACTTACAATCATAATTGTTAATTAGATAATAAACCGAATGTCAGACTATTTACAGAAAATAGCAAAAAAAATACTGATAGATATTGATAGACTTCTATCAGCATCTATCCGTGATAGACTTCGATAATTTCTATCTCTGATAGATTTCTATCAACGTCTATCACGACTTTCTAAAAAAATTTTACTATTTTGTAAAACAGTTTCTCTTATTTTTCTATTTTTAAAAATTCTCCTATATTTAGTGTTTTAGTCTCTTTATTTTAAATTATATAATTTTGTGAGTCCCCAACGCATGCTACCATTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTATTTCTACATTAGAATATAAACAGAAAATAATTGAGAAATTCTATATATATATATATATAAGTAATAATAAAGCGAAGGTAGAGAACCTTAACCAAAGAAATATCAGTAACTCACTCATAACTTTTAATGTTTTGTTATTCCCTTTCTATTCATGTCTTAAAAAACTAACTCAAATTTTTTTTAAAAAAATTATTTTTAACTATTTGACTATAATTAAATTTAAGTGTTTCTTTAAGATAGGTATATTTTGGAATGTACCCAAGTATTGCTTTTACACAAATTCAAACTTCTCGACACCTTAAATAACTTTCAGATTTACAAAGATCGTGAACCAGTTAATTAGATAATAAACCGAATCTCTTGAAAACCTAATGATGAATGCCATGATTTTGGGTTGGGATTTTATGAAAGTTTTGTTTGGATCAACACAGAGAAGGGGCGGTGAAGTTGGAGGAATTGGCAAAGGATGAGAAGTTTGAAGGGGCATCTTGTGAGTGTGGAGAAGGTTGGAGCTGCACCATCTCCAAGATTATTGATCAAGATCAGGCCAAGCCCTTCGCTAAATGTGCTGGTGATTGTTCTTGCATCACTGTTAATTGA

mRNA sequence

ATGGAAAGTGAGGCAAAAACCACTCAATTTCTCAGTAGTGTGGGGAGTGAGGTGGAAAAGGGAGGACTTGGAAAGGCTTATTGCAAATGTGGAGAAGGATGGAAATGTGAGATCAAAAGAACTCAAGGCCCCGATGCTGGCAACACCTTCGTTAACTGTGGCAACAACTGCATTTGTATAATAGAAGGGGCGGTGAAGTTGGAGGAATTGGCAAAGGATGAGAAGTTTGAAGGGGCATCTTGTGAGTGTGGAGAAGGTTGGAGCTGCACCATCTCCAAGATTATTGATCAAGATCAGGCCAAGCCCTTCGCTAAATGTGCTGGTGATTGTTCTTGCATCACTGTTAATTGA

Coding sequence (CDS)

ATGGAAAGTGAGGCAAAAACCACTCAATTTCTCAGTAGTGTGGGGAGTGAGGTGGAAAAGGGAGGACTTGGAAAGGCTTATTGCAAATGTGGAGAAGGATGGAAATGTGAGATCAAAAGAACTCAAGGCCCCGATGCTGGCAACACCTTCGTTAACTGTGGCAACAACTGCATTTGTATAATAGAAGGGGCGGTGAAGTTGGAGGAATTGGCAAAGGATGAGAAGTTTGAAGGGGCATCTTGTGAGTGTGGAGAAGGTTGGAGCTGCACCATCTCCAAGATTATTGATCAAGATCAGGCCAAGCCCTTCGCTAAATGTGCTGGTGATTGTTCTTGCATCACTGTTAATTGA

Protein sequence

MESEAKTTQFLSSVGSEVEKGGLGKAYCKCGEGWKCEIKRTQGPDAGNTFVNCGNNCICIIEGAVKLEELAKDEKFEGASCECGEGWSCTISKIIDQDQAKPFAKCAGDCSCITVN
Homology
[Close]
BLAST of HG10003013 vs. NCBI nr
Match: XP_038905268.1 (uncharacterized protein LOC120091343 isoform X1 [Benincasa hispida])

HSP 1 Score: 214.9 bits (546), Expect = 3.6e-52
Identity = 104/119 (87.39%), Postives = 106/119 (89.08%), Query Frame = 0 

Query: 1   MESEAKTTQFLSSVGSEVEKGGLGKAYCKCGEGWKCEIKRTQGPDAGNTFVNCGNNCICI 60
           MESEAK  Q LSSVGSEVEKG LGKAYCKCGEGWKCEIKRTQGPDAG TFVNCGNNCICI
Sbjct: 1   MESEAKANQSLSSVGSEVEKGVLGKAYCKCGEGWKCEIKRTQGPDAGKTFVNCGNNCICI 60

Query: 61  I----EGAVKLEELAKDEKFEGASCECGEGWSCTISKIIDQDQAKPFAKCAGDCSCITV 116
           I    EGAVKLEELAK+ +FEGASCECGEGWSCTISK IDQ Q KPFAKCAGDCSCITV
Sbjct: 61  IEGTGEGAVKLEELAKEGQFEGASCECGEGWSCTISK-IDQHQPKPFAKCAGDCSCITV 118

[Close]
BLAST of HG10003013 vs. NCBI nr
Match: XP_038905270.1 (uncharacterized protein LOC120091343 isoform X2 [Benincasa hispida])

HSP 1 Score: 209.1 bits (531), Expect = 2.0e-50
Identity = 103/119 (86.55%), Postives = 105/119 (88.24%), Query Frame = 0 

Query: 1   MESEAKTTQFLSSVGSEVEKGGLGKAYCKCGEGWKCEIKRTQGPDAGNTFVNCGNNCICI 60
           MESEAK  Q L SVGSEVEKG LGKAYCKCGEGWKCEIKRTQGPDAG TFVNCGNNCICI
Sbjct: 1   MESEAKANQSL-SVGSEVEKGVLGKAYCKCGEGWKCEIKRTQGPDAGKTFVNCGNNCICI 60

Query: 61  I----EGAVKLEELAKDEKFEGASCECGEGWSCTISKIIDQDQAKPFAKCAGDCSCITV 116
           I    EGAVKLEELAK+ +FEGASCECGEGWSCTISK IDQ Q KPFAKCAGDCSCITV
Sbjct: 61  IEGTGEGAVKLEELAKEGQFEGASCECGEGWSCTISK-IDQHQPKPFAKCAGDCSCITV 117

[Close]
BLAST of HG10003013 vs. NCBI nr
Match: XP_023540550.1 (uncharacterized protein LOC111800878 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 197.2 bits (500), Expect = 7.8e-47
Identity = 96/122 (78.69%), Postives = 100/122 (81.97%), Query Frame = 0 

Query: 1   MESEAKTTQFLSSVGSEVE---KGGLGKAYCKCGEGWKCEIKRTQGPDAGNTFVNCGNNC 60
           MESEAK  Q LSSVGSEVE   KG LGKAYCKCGEGWKCEIKRTQGPDAG TFVNCGNNC
Sbjct: 1   MESEAKAIQSLSSVGSEVEVGAKGVLGKAYCKCGEGWKCEIKRTQGPDAGKTFVNCGNNC 60

Query: 61  ICII----EGAVKLEELAKDEKFEGASCECGEGWSCTISKIIDQDQAKPFAKCAGDCSCI 116
           +CII    EGAVKL++LA +  FEGASCECGEGWSCTISKI      K FAKCAGDCSCI
Sbjct: 61  VCIIEGTAEGAVKLQQLAGEGGFEGASCECGEGWSCTISKIEGPQDTKSFAKCAGDCSCI 120

[Close]
BLAST of HG10003013 vs. NCBI nr
Match: XP_023540551.1 (uncharacterized protein LOC111800878 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 191.0 bits (484), Expect = 5.6e-45
Identity = 95/122 (77.87%), Postives = 99/122 (81.15%), Query Frame = 0 

Query: 1   MESEAKTTQFLSSVGSEVE---KGGLGKAYCKCGEGWKCEIKRTQGPDAGNTFVNCGNNC 60
           MESEAK  Q L SVGSEVE   KG LGKAYCKCGEGWKCEIKRTQGPDAG TFVNCGNNC
Sbjct: 1   MESEAKAIQSL-SVGSEVEVGAKGVLGKAYCKCGEGWKCEIKRTQGPDAGKTFVNCGNNC 60

Query: 61  ICII----EGAVKLEELAKDEKFEGASCECGEGWSCTISKIIDQDQAKPFAKCAGDCSCI 116
           +CII    EGAVKL++LA +  FEGASCECGEGWSCTISKI      K FAKCAGDCSCI
Sbjct: 61  VCIIEGTAEGAVKLQQLAGEGGFEGASCECGEGWSCTISKIEGPQDTKSFAKCAGDCSCI 120

[Close]
BLAST of HG10003013 vs. NCBI nr
Match: XP_023005604.1 (uncharacterized protein LOC111498543 [Cucurbita maxima])

HSP 1 Score: 190.7 bits (483), Expect = 7.3e-45
Identity = 94/119 (78.99%), Postives = 99/119 (83.19%), Query Frame = 0 

Query: 1   MESEAKTTQFLSSVGSEVEKGGLGKAYCKCGEGWKCEIKRTQGPDAGNTFVNCGNNCICI 60
           MESEAK  Q L SVGS  EKG LGKAYCKCGEGWKCEIKRTQGPDAG TFVNCGNNC+CI
Sbjct: 1   MESEAKVIQSL-SVGSG-EKGVLGKAYCKCGEGWKCEIKRTQGPDAGKTFVNCGNNCVCI 60

Query: 61  I----EGAVKLEELAKDEKFEGASCECGEGWSCTISKIIDQDQAKPFAKCAGDCSCITV 116
           I    EGAVKL++LA +  FEGASCECGEGWSC+ISKI     AKPFAKCAGDCSCITV
Sbjct: 61  IEGTAEGAVKLQQLAGEGGFEGASCECGEGWSCSISKIEGPQDAKPFAKCAGDCSCITV 117

[Close]
BLAST of HG10003013 vs. ExPASy TrEMBL
Match: A0A6J1KZQ8 (uncharacterized protein LOC111498543 OS=Cucurbita maxima OX=3661 GN=LOC111498543 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 3.5e-45
Identity = 94/119 (78.99%), Postives = 99/119 (83.19%), Query Frame = 0 

Query: 1   MESEAKTTQFLSSVGSEVEKGGLGKAYCKCGEGWKCEIKRTQGPDAGNTFVNCGNNCICI 60
           MESEAK  Q L SVGS  EKG LGKAYCKCGEGWKCEIKRTQGPDAG TFVNCGNNC+CI
Sbjct: 1   MESEAKVIQSL-SVGSG-EKGVLGKAYCKCGEGWKCEIKRTQGPDAGKTFVNCGNNCVCI 60

Query: 61  I----EGAVKLEELAKDEKFEGASCECGEGWSCTISKIIDQDQAKPFAKCAGDCSCITV 116
           I    EGAVKL++LA +  FEGASCECGEGWSC+ISKI     AKPFAKCAGDCSCITV
Sbjct: 61  IEGTAEGAVKLQQLAGEGGFEGASCECGEGWSCSISKIEGPQDAKPFAKCAGDCSCITV 117

[Close]
BLAST of HG10003013 vs. ExPASy TrEMBL
Match: A0A6J1EA88 (uncharacterized protein LOC111432244 OS=Cucurbita moschata OX=3662 GN=LOC111432244 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.3e-44
Identity = 93/119 (78.15%), Postives = 97/119 (81.51%), Query Frame = 0 

Query: 1   MESEAKTTQFLSSVGSEVEKGGLGKAYCKCGEGWKCEIKRTQGPDAGNTFVNCGNNCICI 60
           MESEAK  Q L SVGS  EKG LGKAYCKCGEGWKCEIKRTQGPDAG TFVNCGNNC+CI
Sbjct: 1   MESEAKAVQSL-SVGSG-EKGVLGKAYCKCGEGWKCEIKRTQGPDAGKTFVNCGNNCVCI 60

Query: 61  I----EGAVKLEELAKDEKFEGASCECGEGWSCTISKIIDQDQAKPFAKCAGDCSCITV 116
           I    EGAVKL++LA +  FEGASCECGEGWSCTISKI      K FAKCAGDCSCITV
Sbjct: 61  IEGTAEGAVKLQQLAGEGGFEGASCECGEGWSCTISKIEGPQDTKSFAKCAGDCSCITV 117

[Close]
BLAST of HG10003013 vs. ExPASy TrEMBL
Match: A0A6J1CV46 (uncharacterized protein LOC111014857 OS=Momordica charantia OX=3673 GN=LOC111014857 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 4.5e-40
Identity = 82/119 (68.91%), Postives = 92/119 (77.31%), Query Frame = 0 

Query: 1   MESEAKTTQFLSSVGSEVEKGGLGKAYCKCGEGWKCEIKRTQGPDAGNTFVNCGNNCICI 60
           MESEAK+ Q L +        G+GKAYCKCGEGWKCEIK TQGPDAG TFVNCGNNCICI
Sbjct: 1   MESEAKSNQSLGA-------AGIGKAYCKCGEGWKCEIKMTQGPDAGKTFVNCGNNCICI 60

Query: 61  IEGA----VKLEELAKDEKFEGASCECGEGWSCTISKIIDQDQAKPFAKCAGDCSCITV 116
           IEG     VKL++LA++   EGA+CECGEGWSCTISKI   +  K FAKCAGDCSCIT+
Sbjct: 61  IEGTAEGEVKLQQLAEESNLEGATCECGEGWSCTISKI---EATKSFAKCAGDCSCITI 109

[Close]
BLAST of HG10003013 vs. ExPASy TrEMBL
Match: A0A6P4BD71 (uncharacterized protein LOC107430595 OS=Ziziphus jujuba OX=326968 GN=LOC107430595 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 3.1e-25
Identity = 64/124 (51.61%), Postives = 77/124 (62.10%), Query Frame = 0 

Query: 1   MESEAKTTQFLSSVGSEVEKGGLGKAYCKCGEGWKCEIKRTQGPDAGNTFVNCGNNCICI 60
           M +++   Q  SSV +  EK G  KA+CKCGEGW C I RT+GPDAG TF  CG NC CI
Sbjct: 1   MATQSVCPQSSSSV-TVAEKYGSSKAFCKCGEGWTCVITRTEGPDAGKTFFKCGGNCCCI 60

Query: 61  IEG---AVKLEELA------KDEKFEGASCECGEGWSCTISKIID-QDQAKPFAKCAGDC 115
           IE      K E+LA      K+     A C+CGEGWSC +S+I D    AKPF +CAG C
Sbjct: 61  IEADGTVTKAEDLANLPEELKNTGPADAYCKCGEGWSCVVSRIEDPTPAAKPFYECAGSC 120

[Close]
BLAST of HG10003013 vs. ExPASy TrEMBL
Match: A0A6J5X755 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS30938 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 4.0e-25
Identity = 54/119 (45.38%), Postives = 77/119 (64.71%), Query Frame = 0 

Query: 1   MESEAKTTQFLSSVGSEVEKGGLGKAYCKCGEGWKCEIKRTQGPDAGNTFVNCGNNCICI 60
           ME+++   Q + SV +      + KA+C+CGEGWKC I RT+GPDAG  F NCG+NC C+
Sbjct: 1   MEAQSSGEQSVRSVAAAGGNSSISKAFCRCGEGWKCVITRTEGPDAGKAFFNCGDNCTCV 60

Query: 61  I--EGAVKLEELAKDEKFEGAS---CECGEGWSCTISKIIDQDQAKPFAKCAGDCSCIT 115
           I  +G V  + + ++ +  GAS   CECGEGW C ISK+   D  K F++C+  C+C+T
Sbjct: 61  IYADGTVTNDVVPQEVEKVGASEAYCECGEGWKCVISKVEGPDAGKGFSECSNGCTCVT 119

The following BLAST results are available for this feature:
BLAST of HG10003013 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038905268.13.6e-5287.39uncharacterized protein LOC120091343 isoform X1 [Benincasa hispida][more]
XP_038905270.12.0e-5086.55uncharacterized protein LOC120091343 isoform X2 [Benincasa hispida][more]
XP_023540550.17.8e-4778.69uncharacterized protein LOC111800878 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_023540551.15.6e-4577.87uncharacterized protein LOC111800878 isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_023005604.17.3e-4578.99uncharacterized protein LOC111498543 [Cucurbita maxima][more]
BLAST of HG10003013 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10003013 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KZQ83.5e-4578.99uncharacterized protein LOC111498543 OS=Cucurbita maxima OX=3661 GN=LOC111498543... [more]
A0A6J1EA882.3e-4478.15uncharacterized protein LOC111432244 OS=Cucurbita moschata OX=3662 GN=LOC1114322... [more]
A0A6J1CV464.5e-4068.91uncharacterized protein LOC111014857 OS=Momordica charantia OX=3673 GN=LOC111014... [more]
A0A6P4BD713.1e-2551.61uncharacterized protein LOC107430595 OS=Ziziphus jujuba OX=326968 GN=LOC10743059... [more]
A0A6J5X7554.0e-2545.38Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS30938 PE=... [more]
BLAST of HG10003013 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10003013.1HG10003013.1mRNA