HG10002968 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10002968
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	protein LOW PSII ACCUMULATION 3, chloroplastic
Location	Chr11: 15916482 .. 15918628 (-)
RNA-Seq Expression	HG10002968
Synteny	HG10002968

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATTTCTCCAACGCGAATTTTGCTTCTTCCTCTACCATTCCCACTGCGATTCTTCCACTTCCTTCTCCAAATGTAATTTCTCCAACTTCCTTTTTCCTTTTCCATGGCGTTCTCTTCAATCTTTACTTCTAAATCCTTTTTCCTAAGCTTTTCTTTCTCTGTTTCTATCTCTAGCTTGCTTGTTTCAGGATTTCGCACCGGAAACCTCATCGGAGTTTCGTTTCCAGTTCAATGTTTGAGTTTAAGGCGCGTAGAAATCTCAGAGTTCTGGCGAATTCGAGTAATCATCAGAGTAGCAATGCCTCGACTGATTTAGACGTTCCGTTTCCCCGCGATTATTCTGATCTTCTCAATCAGGTATGGTTTCAATCACTTTCGGAATCTCTTTTGTTTCATTTTTACTTCTTGTAGCCATTTTTTCTACGATCACTTCACTGCTGTGTATGTTTCTTGTGTCATTTTAGCGATTAGCTACTTCAATTAACTTCGCTTAGCTTTTCATTTCATTTTTTTTTTCACATTACGTTTAGCTTTGAGATGTAACTGTCATTTTCGGATCTCGTCTTTCAAACAACTACAGGCGAAAAAAGCAACTGAAGCGGCTTTAAGAGACAACAAACAGTTGATGGTTAGTTTTGACTTTTGAGCATATTTTAATTTTTTTTTGAATCAGGAGAAGCATTTATAGATTGATAAAATAGTGTGAAATTTCTGATCCAAACAATTCTGTTTAGGAAATTGAATTTCCAACTGCTGGACTTGAATCAGTTCCAGGTTCTTTCCTCTTCTTGATTCGTTACATTTTAATTTCGTTATCATCTCAAATTGTTCCCAGGCCTCTCCAGTAACTTGTTTTGCCTGTTACAGACCGTATAACCTTATGTATCAGGTGATGGCGAAGGAGGAATTGAAATGACTGAGAGTATGCAATTGATTCGCCATTTTTGTGACTGCTTCATAGAACCACTGAAAGCCACTCGGACCAGAGTAGTAATGTCCTACTGCATTATCCTTCTATTTCTTACAATATAAATTGCTTGCATTCACTTATGCTGTAGAATTTATCACTGAGAGGGACTAAGAAGCATATAATAGGTGAAATCATCTTCAATCTTTTATATGTTTCTTTCTAAAATTTCGTCCACATAAAGATCATAATACCTACTACGATTGTCCCTTTTTCTCGAGAAATTATTCAGTGAGGCCACCTCAATGTGGCCAACACTTTTATGCCATTGGATTTATGAGAAAGAAGTTTTCCGAATTTATATCCGGTGGTTATTAGGAGTCAAACAAAATTTTAAATCTAACATCCAACAGTTCTTATGATGCAGCCATTATTACGACAATCTCATTGTATAATTTGTCCTTTTTTCCCCTTTGATATCAGTACTAAAAATTTCTTTTGTGCGCTATACTATAATTTAGCAAAATCTTCTTGTTTTCTTCACGTTTTATCACTTTTTTCCCCCTCCGAAATATCTTCATGTTATGACATTTGAATGAGAAAATGTAATATAGCTGGCATCCTTTTTGTGTTAACAATCATGTTTTTGATTCTAATATGCTTACTGTCTGATGTTCTTTTTTTTCTTTTCTGACCATAAAAAAGCTCTTTCACATTCTACTGTTAGTTGTAGTAAAGAGAAACATATTTAGTTCTTTCCAGAGGCCAACGAAGTTAAATTTGCAAGAAACACAGCATTTGAAGGAGTTTCATTCAAGTTGGATTACCTCACAAAACCATCATTTTTTGAGGATTTTGGTTTTGTTGAGAAAGTGAAAATGGCTGACCGTGTGAAACCAGAAGATGAGCTTTTTCTGGTTGCATATCCATATTTCAATGTCAATGGTTAGTGAAGCCTTCCTTTGTTTCTTTTCCATCTTTTATTTTAAAGCATTTTGCTTTTTGTCGGTTAATTAAATTACAGCTTTTCTTCTTGTTATTATTATTATTATTTTTCCATTACATTACAGAATTGCTTGTGGTTGAAGAGCTTTACAAGGAAGCTGTCCAAAACACTACACGAAAACTCATAATATTTAACGGAGAGCTCGACCGCATTAGATCCGGCTGTATCCTTTTATCAACTTTTCTATTATTCAATGAAGAGTGGTTTTGGGATCCCCTTTTAAAACGGTAA

mRNA sequence

ATGCATTTCTCCAACGCGAATTTTGCTTCTTCCTCTACCATTCCCACTGCGATTCTTCCACTTCCTTCTCCAAATCTTGCTTGTTTCAGGATTTCGCACCGGAAACCTCATCGGAGTTTCGTTTCCAGTTCAATGTTTGAGTTTAAGGCGCGTAGAAATCTCAGAGTTCTGGCGAATTCGAGTAATCATCAGAGTAGCAATGCCTCGACTGATTTAGACGTTCCGTTTCCCCGCGATTATTCTGATCTTCTCAATCAGGCGAAAAAAGCAACTGAAGCGGCTTTAAGAGACAACAAACAGTTGATGGAAATTGAATTTCCAACTGCTGGACTTGAATCAGTTCCAGAGGCCAACGAAGTTAAATTTGCAAGAAACACAGCATTTGAAGGAGTTTCATTCAAGTTGGATTACCTCACAAAACCATCATTTTTTGAGGATTTTGGTTTTGTTGAGAAAGTGAAAATGGCTGACCGTGTGAAACCAGAAGATGAGCTTTTTCTGGTTGCATATCCATATTTCAATGTCAATGAATTGCTTGTGGTTGAAGAGCTTTACAAGGAAGCTGTCCAAAACACTACACGAAAACTCATAATATTTAACGGAGAGCTCGACCGCATTAGATCCGGCTGTATCCTTTTATCAACTTTTCTATTATTCAATGAAGAGTGGTTTTGGGATCCCCTTTTAAAACGGTAA

Coding sequence (CDS)

ATGCATTTCTCCAACGCGAATTTTGCTTCTTCCTCTACCATTCCCACTGCGATTCTTCCACTTCCTTCTCCAAATCTTGCTTGTTTCAGGATTTCGCACCGGAAACCTCATCGGAGTTTCGTTTCCAGTTCAATGTTTGAGTTTAAGGCGCGTAGAAATCTCAGAGTTCTGGCGAATTCGAGTAATCATCAGAGTAGCAATGCCTCGACTGATTTAGACGTTCCGTTTCCCCGCGATTATTCTGATCTTCTCAATCAGGCGAAAAAAGCAACTGAAGCGGCTTTAAGAGACAACAAACAGTTGATGGAAATTGAATTTCCAACTGCTGGACTTGAATCAGTTCCAGAGGCCAACGAAGTTAAATTTGCAAGAAACACAGCATTTGAAGGAGTTTCATTCAAGTTGGATTACCTCACAAAACCATCATTTTTTGAGGATTTTGGTTTTGTTGAGAAAGTGAAAATGGCTGACCGTGTGAAACCAGAAGATGAGCTTTTTCTGGTTGCATATCCATATTTCAATGTCAATGAATTGCTTGTGGTTGAAGAGCTTTACAAGGAAGCTGTCCAAAACACTACACGAAAACTCATAATATTTAACGGAGAGCTCGACCGCATTAGATCCGGCTGTATCCTTTTATCAACTTTTCTATTATTCAATGAAGAGTGGTTTTGGGATCCCCTTTTAAAACGGTAA

Protein sequence

MHFSNANFASSSTIPTAILPLPSPNLACFRISHRKPHRSFVSSSMFEFKARRNLRVLANSSNHQSSNASTDLDVPFPRDYSDLLNQAKKATEAALRDNKQLMEIEFPTAGLESVPEANEVKFARNTAFEGVSFKLDYLTKPSFFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNELLVVEELYKEAVQNTTRKLIIFNGELDRIRSGCILLSTFLLFNEEWFWDPLLKR

Homology

[Close]

BLAST of HG10002968 vs. NCBI nr
Match: XP_038877169.1 (uncharacterized protein LOC120069467 isoform X4 [Benincasa hispida])

HSP 1 Score: 409.8 bits (1052), Expect = 1.5e-110
Identity = 219/268 (81.72%), Postives = 222/268 (82.84%), Query Frame = 0


Query: 1   MHFSNANFASSSTIPTAILPLPSPNLACFRISHRKPHRSFVSSSMFEFKARRNLRVLANS 60
           MHFSNANFASSS IPTAILPLPSPNLACFRISHRK HRSF+ SS+FEFKARRNLRV ANS
Sbjct: 1   MHFSNANFASSSAIPTAILPLPSPNLACFRISHRKTHRSFLFSSLFEFKARRNLRVSANS 60

Query: 61  SNHQSSNASTDLDVPFPRDYSDLLNQAKKATEAALRDNKQLMEIEFPTAGLESV------ 120
           SN QSSNASTDLDVPFPRDYSDLLNQAKKATEAALRDNKQLMEIEFPTAGLESV      
Sbjct: 61  SNRQSSNASTDLDVPFPRDYSDLLNQAKKATEAALRDNKQLMEIEFPTAGLESVPGDGEG 120

Query: 121 -------------------------------PEANEVKFARNTAFEGVSFKLDYLTKPSF 180
                                          PEANEVKFARNTAFEGVSFKLDYLTKPSF
Sbjct: 121 GNEMTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTAFEGVSFKLDYLTKPSF 180

Query: 181 FEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNELLVVEELYKEAVQNTTRKLIIFNGEL 232
           FEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNE+LVVEELYKEAVQNTTRKLIIFNGEL
Sbjct: 181 FEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVQNTTRKLIIFNGEL 240

[Close]

BLAST of HG10002968 vs. NCBI nr
Match: XP_038877168.1 (uncharacterized protein LOC120069467 isoform X3 [Benincasa hispida])

HSP 1 Score: 400.6 bits (1028), Expect = 9.2e-108
Identity = 214/259 (82.63%), Postives = 217/259 (83.78%), Query Frame = 0


Query: 1   MHFSNANFASSSTIPTAILPLPSPNLACFRISHRKPHRSFVSSSMFEFKARRNLRVLANS 60
           MHFSNANFASSS IPTAILPLPSPNLACFRISHRK HRSF+ SS+FEFKARRNLRV ANS
Sbjct: 1   MHFSNANFASSSAIPTAILPLPSPNLACFRISHRKTHRSFLFSSLFEFKARRNLRVSANS 60

Query: 61  SNHQSSNASTDLDVPFPRDYSDLLNQAKKATEAALRDNKQLMEIEFPTAGLESV------ 120
           SN QSSNASTDLDVPFPRDYSDLLNQAKKATEAALRDNKQLMEIEFPTAGLESV      
Sbjct: 61  SNRQSSNASTDLDVPFPRDYSDLLNQAKKATEAALRDNKQLMEIEFPTAGLESVPGDGEG 120

Query: 121 -------------------------------PEANEVKFARNTAFEGVSFKLDYLTKPSF 180
                                          PEANEVKFARNTAFEGVSFKLDYLTKPSF
Sbjct: 121 GNEMTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTAFEGVSFKLDYLTKPSF 180

Query: 181 FEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNELLVVEELYKEAVQNTTRKLIIFNGEL 223
           FEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNE+LVVEELYKEAVQNTTRKLIIFNGEL
Sbjct: 181 FEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVQNTTRKLIIFNGEL 240

[Close]

BLAST of HG10002968 vs. NCBI nr
Match: XP_038877166.1 (protein LOW PSII ACCUMULATION 3, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 400.6 bits (1028), Expect = 9.2e-108
Identity = 214/259 (82.63%), Postives = 217/259 (83.78%), Query Frame = 0


Query: 1   MHFSNANFASSSTIPTAILPLPSPNLACFRISHRKPHRSFVSSSMFEFKARRNLRVLANS 60
           MHFSNANFASSS IPTAILPLPSPNLACFRISHRK HRSF+ SS+FEFKARRNLRV ANS
Sbjct: 1   MHFSNANFASSSAIPTAILPLPSPNLACFRISHRKTHRSFLFSSLFEFKARRNLRVSANS 60

Query: 61  SNHQSSNASTDLDVPFPRDYSDLLNQAKKATEAALRDNKQLMEIEFPTAGLESV------ 120
           SN QSSNASTDLDVPFPRDYSDLLNQAKKATEAALRDNKQLMEIEFPTAGLESV      
Sbjct: 61  SNRQSSNASTDLDVPFPRDYSDLLNQAKKATEAALRDNKQLMEIEFPTAGLESVPGDGEG 120

Query: 121 -------------------------------PEANEVKFARNTAFEGVSFKLDYLTKPSF 180
                                          PEANEVKFARNTAFEGVSFKLDYLTKPSF
Sbjct: 121 GNEMTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTAFEGVSFKLDYLTKPSF 180

Query: 181 FEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNELLVVEELYKEAVQNTTRKLIIFNGEL 223
           FEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNE+LVVEELYKEAVQNTTRKLIIFNGEL
Sbjct: 181 FEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVQNTTRKLIIFNGEL 240

[Close]

BLAST of HG10002968 vs. NCBI nr
Match: KAA0052999.1 (protein LOW PSII ACCUMULATION 3 [Cucumis melo var. makuwa] >TYK11455.1 protein LOW PSII ACCUMULATION 3 [Cucumis melo var. makuwa])

HSP 1 Score: 398.3 bits (1022), Expect = 4.6e-107
Identity = 215/269 (79.93%), Postives = 218/269 (81.04%), Query Frame = 0


Query: 1   MHFSNANFASSSTIPTAILPLPSPNLACFRISHRKPHRSFVSSSMFEFKARRNLRVLANS 60
           MHFSNANFASSSTI TA+LPL SP LACFRISHRK HRSFVSSSMFEF  RRNLRVL  S
Sbjct: 1   MHFSNANFASSSTISTAVLPLSSPELACFRISHRKTHRSFVSSSMFEFMPRRNLRVLPPS 60

Query: 61  -SNHQSSNASTDLDVPFPRDYSDLLNQAKKATEAALRDNKQLMEIEFPTAGLESV----- 120
            SN Q+SNASTDLDVPFPRDYSDLLNQAKKATEAALRDNKQLMEIEFPTAGLESV     
Sbjct: 61  LSNRQNSNASTDLDVPFPRDYSDLLNQAKKATEAALRDNKQLMEIEFPTAGLESVPGDGE 120

Query: 121 --------------------------------PEANEVKFARNTAFEGVSFKLDYLTKPS 180
                                           PEANEVKFARNTAFEGVSFKLDYLTKPS
Sbjct: 121 GGIEMTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTAFEGVSFKLDYLTKPS 180

Query: 181 FFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNELLVVEELYKEAVQNTTRKLIIFNGE 232
           FFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNE+LVVEELYKEAVQNTTRKLIIFNGE
Sbjct: 181 FFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVQNTTRKLIIFNGE 240

[Close]

BLAST of HG10002968 vs. NCBI nr
Match: KAG7015785.1 (hypothetical protein SDJN02_23423, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 390.6 bits (1002), Expect = 9.5e-105
Identity = 199/231 (86.15%), Postives = 211/231 (91.34%), Query Frame = 0


Query: 1   MHFSNANFASSSTIPTAILPLPSPNLACFRISHRKPHRSFVSSSMFEFKARRNLRVLANS 60
           M+FSNANF SSSTIP A+LPLPS N ACFR+SHRK HRS +SSS+ EF A RNLRVL+NS
Sbjct: 39  MYFSNANFVSSSTIPAAVLPLPSRNYACFRMSHRKIHRSLLSSSVLEFMAGRNLRVLSNS 98

Query: 61  SNHQSSNASTDLDVPFPRDYSDLLNQAKKATEAALRDNKQLMEIEFPTAGLESVPEANEV 120
           SN +SS+ STD DVPFPRDY DLL+QAKKATEAALRDNKQLMEIEFPTAGLESVPEANEV
Sbjct: 99  SNRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESVPEANEV 158

Query: 121 KFARNTAFEGVSFKLDYLTKPSFFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNELLV 180
           K+ARNTAFEG SFKLDYLTKPSFFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNE+LV
Sbjct: 159 KYARNTAFEGASFKLDYLTKPSFFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLV 218

Query: 181 VEELYKEAVQNTTRKLIIFNGELDRIRSGCILLSTFLLFNEEWFWDPLLKR 232
           VEELYKEAV NT RKLIIFNGELDRIRSGCILLS+FLL NEEW  D LLKR
Sbjct: 219 VEELYKEAVANTARKLIIFNGELDRIRSGCILLSSFLLSNEEWARDQLLKR 269

[Close]

BLAST of HG10002968 vs. ExPASy TrEMBL
Match: A0A5D3CIQ2 (Protein LOW PSII ACCUMULATION 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001120 PE=4 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 2.2e-107
Identity = 215/269 (79.93%), Postives = 218/269 (81.04%), Query Frame = 0


Query: 1   MHFSNANFASSSTIPTAILPLPSPNLACFRISHRKPHRSFVSSSMFEFKARRNLRVLANS 60
           MHFSNANFASSSTI TA+LPL SP LACFRISHRK HRSFVSSSMFEF  RRNLRVL  S
Sbjct: 1   MHFSNANFASSSTISTAVLPLSSPELACFRISHRKTHRSFVSSSMFEFMPRRNLRVLPPS 60

Query: 61  -SNHQSSNASTDLDVPFPRDYSDLLNQAKKATEAALRDNKQLMEIEFPTAGLESV----- 120
            SN Q+SNASTDLDVPFPRDYSDLLNQAKKATEAALRDNKQLMEIEFPTAGLESV     
Sbjct: 61  LSNRQNSNASTDLDVPFPRDYSDLLNQAKKATEAALRDNKQLMEIEFPTAGLESVPGDGE 120

Query: 121 --------------------------------PEANEVKFARNTAFEGVSFKLDYLTKPS 180
                                           PEANEVKFARNTAFEGVSFKLDYLTKPS
Sbjct: 121 GGIEMTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTAFEGVSFKLDYLTKPS 180

Query: 181 FFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNELLVVEELYKEAVQNTTRKLIIFNGE 232
           FFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNE+LVVEELYKEAVQNTTRKLIIFNGE
Sbjct: 181 FFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVQNTTRKLIIFNGE 240

[Close]

BLAST of HG10002968 vs. ExPASy TrEMBL
Match: A0A1S3BKQ4 (protein LOW PSII ACCUMULATION 3, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490732 PE=4 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 6.7e-96
Identity = 197/247 (79.76%), Postives = 200/247 (80.97%), Query Frame = 0


Query: 1   MHFSNANFASSSTIPTAILPLPSPNLACFRISHRKPHRSFVSSSMFEFKARRNLRVLANS 60
           MHFSNANFASSSTI TA+LPL SP LACFRISHRK HRSFVSSSMFEF  RRNLRVL  S
Sbjct: 1   MHFSNANFASSSTISTAVLPLSSPELACFRISHRKTHRSFVSSSMFEFMPRRNLRVLPPS 60

Query: 61  -SNHQSSNASTDLDVPFPRDYSDLLNQAKKATEAALRDNKQLMEIEFPTAGLESV----- 120
            SN Q+SNASTDLDVPFPRDYSDLLNQAKKATEAALRDNKQLMEIEFPTAGLESV     
Sbjct: 61  LSNRQNSNASTDLDVPFPRDYSDLLNQAKKATEAALRDNKQLMEIEFPTAGLESVPGDGE 120

Query: 121 --------------------------------PEANEVKFARNTAFEGVSFKLDYLTKPS 180
                                           PEANEVKFARNTAFEGVSFKLDYLTKPS
Sbjct: 121 GGIEMTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTAFEGVSFKLDYLTKPS 180

Query: 181 FFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNELLVVEELYKEAVQNTTRKLIIFNGE 210
           FFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNE+LVVEELYKEAVQNTTRKLIIFNGE
Sbjct: 181 FFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVQNTTRKLIIFNGE 240

[Close]

BLAST of HG10002968 vs. ExPASy TrEMBL
Match: A0A1S3BK29 (protein LOW PSII ACCUMULATION 3, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490732 PE=4 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 1.3e-94
Identity = 197/258 (76.36%), Postives = 200/258 (77.52%), Query Frame = 0


Query: 1   MHFSNANFASSSTIPTAILPLPSPNLACFRISHRKPHRSFVSSSMFEFKARRNLRVLANS 60
           MHFSNANFASSSTI TA+LPL SP LACFRISHRK HRSFVSSSMFEF  RRNLRVL  S
Sbjct: 1   MHFSNANFASSSTISTAVLPLSSPELACFRISHRKTHRSFVSSSMFEFMPRRNLRVLPPS 60

Query: 61  -SNHQSSNASTDLDVPFPRDYSDLLNQAKKATEAALRDNKQLMEIEFPTAGLESV----- 120
            SN Q+SNASTDLDVPFPRDYSDLLNQAKKATEAALRDNKQLMEIEFPTAGLESV     
Sbjct: 61  LSNRQNSNASTDLDVPFPRDYSDLLNQAKKATEAALRDNKQLMEIEFPTAGLESVPGDGE 120

Query: 121 -------------------------------------------PEANEVKFARNTAFEGV 180
                                                      PEANEVKFARNTAFEGV
Sbjct: 121 GGIEMTESMQLIRQFCDCFIDPLKATRTRVTVSCSKEKHIQFFPEANEVKFARNTAFEGV 180

Query: 181 SFKLDYLTKPSFFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNELLVVEELYKEAVQN 210
           SFKLDYLTKPSFFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNE+LVVEELYKEAVQN
Sbjct: 181 SFKLDYLTKPSFFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVQN 240

[Close]

BLAST of HG10002968 vs. ExPASy TrEMBL
Match: A0A0A0L151 (DUF1995 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G006620 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 4.8e-94
Identity = 194/247 (78.54%), Postives = 198/247 (80.16%), Query Frame = 0


Query: 1   MHFSNANFASSSTIPTAILPLPSPNLACFRISHRKPHRSFVSSSMFEFKARRNLRVL-AN 60
           MHF NANFASSSTI TA+LPLPSP LACFRISHR+ HRS VSSSMFEF  RR+LRVL  N
Sbjct: 1   MHFCNANFASSSTIATAVLPLPSPKLACFRISHRRTHRSSVSSSMFEFMPRRHLRVLPPN 60

Query: 61  SSNHQSSNASTDLDVPFPRDYSDLLNQAKKATEAALRDNKQLMEIEFPTAGLESV----- 120
            SN QSSNASTDLDVPFPRDYSDLLNQAKKATEAAL DNKQLMEIEFPTAGLESV     
Sbjct: 61  LSNRQSSNASTDLDVPFPRDYSDLLNQAKKATEAALIDNKQLMEIEFPTAGLESVPGDGE 120

Query: 121 --------------------------------PEANEVKFARNTAFEGVSFKLDYLTKPS 180
                                           PEANEVKFARNTAFEGVSFKLDYLTKPS
Sbjct: 121 GGIEMTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTAFEGVSFKLDYLTKPS 180

Query: 181 FFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNELLVVEELYKEAVQNTTRKLIIFNGE 210
           FFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNE+LVVEELYKEAVQNTTRKLIIFNGE
Sbjct: 181 FFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVQNTTRKLIIFNGE 240

[Close]

BLAST of HG10002968 vs. ExPASy TrEMBL
Match: A0A6J1CWN5 (uncharacterized protein LOC111014905 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111014905 PE=4 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 2.2e-91
Identity = 191/252 (75.79%), Postives = 197/252 (78.17%), Query Frame = 0


Query: 1   MHFSNANFASSSTIPTAILPLPSPNLACFRISHRKPHRSFVSSSMFEFKA-RRNLRVLAN 60
           MHFS ANFA +S+I  AILPLPS NLACFRISHRK HRSFVS SM EF A RRNLRV AN
Sbjct: 1   MHFSTANFAFTSSITAAILPLPSRNLACFRISHRKFHRSFVSGSMLEFMACRRNLRVSAN 60

Query: 61  SSNHQSSNASTDLDVPFPRDYSDLLNQAKKATEAALRDNKQLMEIEFPTAGLESV----- 120
           S   +SSNAST  DVPFPRDYSDLL+QA+KATEAALRDNKQLMEIEFPTAGLESV     
Sbjct: 61  SGYRESSNASTASDVPFPRDYSDLLDQARKATEAALRDNKQLMEIEFPTAGLESVPGDSE 120

Query: 121 --------------------------------PEANEVKFARNTAFEGVSFKLDYLTKPS 180
                                           PEANEVKFARNTAFEG SFKLDYLTKPS
Sbjct: 121 GGIEMTESMQLIRQFCDCSIDPLKATRTRVFFPEANEVKFARNTAFEGASFKLDYLTKPS 180

Query: 181 FFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNELLVVEELYKEAVQNTTRKLIIFNGE 215
           FFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNE+LVVEELYKEAV NTTRKLIIFNGE
Sbjct: 181 FFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVVNTTRKLIIFNGE 240

[Close]

BLAST of HG10002968 vs. TAIR 10
Match: AT5G48790.1 (Domain of unknown function (DUF1995) )

HSP 1 Score: 216.9 bits (551), Expect = 1.8e-56
Identity = 124/199 (62.31%), Postives = 136/199 (68.34%), Query Frame = 0


Query: 49  KARRNLRVLANS-SNHQSSNASTDLDVPFPRDYSDLLNQAKKATEAALRDNKQLMEIEFP 108
           K  RNL+  A S S   ++N S D +VPFPRDY +L+NQAK+A E AL+D KQLMEIEFP
Sbjct: 40  KTNRNLKFRACSVSGGYNNNTSVD-NVPFPRDYVELINQAKEAVEMALKDEKQLMEIEFP 99

Query: 109 TAGLESV-------------------------------------PEANEVKFARNTAFEG 168
           T+GL SV                                     PEANEVKFA+ T F G
Sbjct: 100 TSGLASVPGDGEGATEMTESINMIREFCDRLLAPEKARSTRIFFPEANEVKFAQKTVFGG 159

Query: 169 VSFKLDYLTKPSFFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNELLVVEELYKEAVQ 210
             FKLDYLTKPS FEDFGF E+VKMADRVKPEDELFLVAYPYFNVNE+LVVEELYKEAV 
Sbjct: 160 TYFKLDYLTKPSLFEDFGFFERVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVV 219

The following BLAST results are available for this feature:

BLAST of HG10002968 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877169.1	1.5e-110	81.72	uncharacterized protein LOC120069467 isoform X4 [Benincasa hispida]	[more]
XP_038877168.1	9.2e-108	82.63	uncharacterized protein LOC120069467 isoform X3 [Benincasa hispida]	[more]
XP_038877166.1	9.2e-108	82.63	protein LOW PSII ACCUMULATION 3, chloroplastic isoform X1 [Benincasa hispida]	[more]
KAA0052999.1	4.6e-107	79.93	protein LOW PSII ACCUMULATION 3 [Cucumis melo var. makuwa] >TYK11455.1 protein L...	[more]
KAG7015785.1	9.5e-105	86.15	hypothetical protein SDJN02_23423, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of HG10002968 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10002968 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CIQ2	2.2e-107	79.93	Protein LOW PSII ACCUMULATION 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3BKQ4	6.7e-96	79.76	protein LOW PSII ACCUMULATION 3, chloroplastic isoform X2 OS=Cucumis melo OX=365...	[more]
A0A1S3BK29	1.3e-94	76.36	protein LOW PSII ACCUMULATION 3, chloroplastic isoform X1 OS=Cucumis melo OX=365...	[more]
A0A0A0L151	4.8e-94	78.54	DUF1995 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G006620 PE=...	[more]
A0A6J1CWN5	2.2e-91	75.79	uncharacterized protein LOC111014905 isoform X2 OS=Momordica charantia OX=3673 G...	[more]

BLAST of HG10002968 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48790.1	1.8e-56	62.31	Domain of unknown function (DUF1995)	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018962	Domain of unknown function DUF1995	PFAM	PF09353	DUF1995	coord: 77..209 e-value: 4.8E-18 score: 65.9
IPR044687	Protein LOW PSII ACCUMULATION 3	PANTHER	PTHR34051	PROTEIN LOW PSII ACCUMULATION 3, CHLOROPLASTIC	coord: 2..115 coord: 115..209
None	No IPR available	PANTHER	PTHR34051:SF1	PROTEIN LOW PSII ACCUMULATION 3, CHLOROPLASTIC ISOFORM X1	coord: 2..115 coord: 115..209

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10002968.1	HG10002968.1	mRNA