HG10002956 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10002956
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr11: 15780233 .. 15780550 (+)
RNA-Seq ExpressionHG10002956
SyntenyHG10002956
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGAGAAGAAATCGCCAATGGCTTCCCGCTTGAAGAAGACACTGAAGAAACTCAGTGCATTTGTTCGCCGCCAACGTTCCCGACGGATGCGGATCAATGTCTTGGATGATCAAGGGAGAATCGTTGAGAATTGTTCCGAGAGAAAGCTTGAACATACTTCCACTTCAAATTACGAAAGCTATGAAGACAATGTCGATCAGCGAGCAGAGATTTTCATCCAGAATTTTCGACGTCATTTGAGGTTTGAAACACAACTTTCTTTGCAATCGAGGTACTATGGAGTTAATGGCTTTGAAACAGAGTATGAAGAGTGA

mRNA sequence

ATGGGAGAGAAGAAATCGCCAATGGCTTCCCGCTTGAAGAAGACACTGAAGAAACTCAGTGCATTTGTTCGCCGCCAACGTTCCCGACGGATGCGGATCAATGTCTTGGATGATCAAGGGAGAATCGTTGAGAATTGTTCCGAGAGAAAGCTTGAACATACTTCCACTTCAAATTACGAAAGCTATGAAGACAATGTCGATCAGCGAGCAGAGATTTTCATCCAGAATTTTCGACGTCATTTGAGGTTTGAAACACAACTTTCTTTGCAATCGAGGTACTATGGAGTTAATGGCTTTGAAACAGAGTATGAAGAGTGA

Coding sequence (CDS)

ATGGGAGAGAAGAAATCGCCAATGGCTTCCCGCTTGAAGAAGACACTGAAGAAACTCAGTGCATTTGTTCGCCGCCAACGTTCCCGACGGATGCGGATCAATGTCTTGGATGATCAAGGGAGAATCGTTGAGAATTGTTCCGAGAGAAAGCTTGAACATACTTCCACTTCAAATTACGAAAGCTATGAAGACAATGTCGATCAGCGAGCAGAGATTTTCATCCAGAATTTTCGACGTCATTTGAGGTTTGAAACACAACTTTCTTTGCAATCGAGGTACTATGGAGTTAATGGCTTTGAAACAGAGTATGAAGAGTGA

Protein sequence

MGEKKSPMASRLKKTLKKLSAFVRRQRSRRMRINVLDDQGRIVENCSERKLEHTSTSNYESYEDNVDQRAEIFIQNFRRHLRFETQLSLQSRYYGVNGFETEYEE
Homology
BLAST of HG10002956 vs. NCBI nr
Match: KAA0052985.1 (hypothetical protein E6C27_scaffold344G00960 [Cucumis melo var. makuwa] >TYK11441.1 hypothetical protein E5676_scaffold139G00970 [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 6.0e-22
Identity = 72/122 (59.02%), Postives = 84/122 (68.85%), Query Frame = 0

Query: 1   MGEKKSPMASRLKKTLKKLSAFVR-----RQRSRRM------------RINVLDDQGRIV 60
           M EKKSPMASRLKK L KL+A VR     R+RS+R+            RI VL+DQ RI 
Sbjct: 1   MAEKKSPMASRLKKALIKLTAVVRLCLVPRRRSQRLGSFDSDDRKVGIRI-VLEDQSRIA 60

Query: 61  ENCSERKLEHTSTSNYESYEDNVDQRAEIFIQNFRRHLRFETQLSLQSRYYGVNGFETEY 106
           EN   RKLE  S+S Y  YE++VDQRAEIFI+NFRR LR E Q+SLQ RYY VN +ETEY
Sbjct: 61  ENSFARKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEY 120

BLAST of HG10002956 vs. NCBI nr
Match: XP_011652707.1 (uncharacterized protein LOC105435054 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 5.3e-18
Identity = 65/116 (56.03%), Postives = 77/116 (66.38%), Query Frame = 0

Query: 8   MASRLKKTLKKLSAFVR-----RQRSRRM-------------RINVLDDQGRIVENCSER 67
           MASRL+K L KL A +R     RQRSRR+             RI VL+DQ RI E+   R
Sbjct: 1   MASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRI-VLEDQSRIAESSFVR 60

Query: 68  KLEHTSTSNYESYEDNVDQRAEIFIQNFRRHLRFETQLSLQSRYYGVNGFETEYEE 106
           KLE  S+S Y  YE++VDQRAEIFI+NFRR LR E Q+SLQ RYY VN +ETEYE+
Sbjct: 61  KLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQ 115

BLAST of HG10002956 vs. NCBI nr
Match: KAE8650012.1 (hypothetical protein Csa_009473 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 4.2e-15
Identity = 61/108 (56.48%), Postives = 71/108 (65.74%), Query Frame = 0

Query: 1   MGEKKSPMASRLKKTLKKLSAFVR-----RQRSRRM-------------RINVLDDQGRI 60
           M EKKSPMASRL+K L KL A +R     RQRSRR+             RI VL+DQ RI
Sbjct: 1   MAEKKSPMASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRI-VLEDQSRI 60

Query: 61  VENCSERKLEHTSTSNYESYEDNVDQRAEIFIQNFRRHLRFETQLSLQ 91
            E+   RKLE  S+S Y  YE++VDQRAEIFI+NFRR LR E Q+SLQ
Sbjct: 61  AESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQ 107

BLAST of HG10002956 vs. NCBI nr
Match: KAG6596691.1 (hypothetical protein SDJN03_09871, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028225.1 hypothetical protein SDJN02_09405, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 90.1 bits (222), Expect = 1.2e-14
Identity = 60/120 (50.00%), Postives = 77/120 (64.17%), Query Frame = 0

Query: 1   MGEKKSPMASRLKKTLKKLSAFV-----RRQRSRRMRINVLDDQ----------GRIVEN 60
           M +KKSP+  RLKK+  KL+AF+     RRQ SRR+R    DD+           RIVEN
Sbjct: 1   MAQKKSPLLFRLKKSAIKLTAFLRLCVARRQNSRRLRSFGSDDRTAGLRSFLEDERIVEN 60

Query: 61  CSERKLEHTSTSNYESYEDNVDQRAEIFIQNFRRHLRFETQLSLQSRYYGVNGFETEYEE 106
            S RKLE  S+++Y ++ED+VD+R++IFI  F R LR E Q+SLQ RY  VN  ETE EE
Sbjct: 61  RSVRKLERASSASYVNFEDDVDKRSQIFIDKFLRQLRLERQISLQLRYCRVNSSETESEE 120

BLAST of HG10002956 vs. NCBI nr
Match: KAG7015798.1 (hypothetical protein SDJN02_23436, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 89.4 bits (220), Expect = 2.1e-14
Identity = 59/120 (49.17%), Postives = 73/120 (60.83%), Query Frame = 0

Query: 1   MGEKKSPMASRLKKTLKKLSAFVR-----RQRSRRMRI-----------NVLDDQGRIVE 60
           M E  +P+  R+KK L KL+AFVR     R  SRRMR            ++L D+  IVE
Sbjct: 1   MAENATPVVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDES-IVE 60

Query: 61  NCSERKLEHTSTSNYESYEDNVDQRAEIFIQNFRRHLRFETQLSLQSRYYGVNGFETEYE 105
            CS RKLE   +S   S ED+VDQRA+IFI NFRR L  E Q+SL+ RYYG+N  E +YE
Sbjct: 61  KCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDYE 119

BLAST of HG10002956 vs. ExPASy TrEMBL
Match: A0A5D3CHZ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00970 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.9e-22
Identity = 72/122 (59.02%), Postives = 84/122 (68.85%), Query Frame = 0

Query: 1   MGEKKSPMASRLKKTLKKLSAFVR-----RQRSRRM------------RINVLDDQGRIV 60
           M EKKSPMASRLKK L KL+A VR     R+RS+R+            RI VL+DQ RI 
Sbjct: 1   MAEKKSPMASRLKKALIKLTAVVRLCLVPRRRSQRLGSFDSDDRKVGIRI-VLEDQSRIA 60

Query: 61  ENCSERKLEHTSTSNYESYEDNVDQRAEIFIQNFRRHLRFETQLSLQSRYYGVNGFETEY 106
           EN   RKLE  S+S Y  YE++VDQRAEIFI+NFRR LR E Q+SLQ RYY VN +ETEY
Sbjct: 61  ENSFARKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEY 120

BLAST of HG10002956 vs. ExPASy TrEMBL
Match: A0A0A0L4Z8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004530 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.1e-21
Identity = 71/123 (57.72%), Postives = 83/123 (67.48%), Query Frame = 0

Query: 1   MGEKKSPMASRLKKTLKKLSAFVR-----RQRSRRM-------------RINVLDDQGRI 60
           M EKKSPMASRL+K L KL A +R     RQRSRR+             RI VL+DQ RI
Sbjct: 1   MAEKKSPMASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRI-VLEDQSRI 60

Query: 61  VENCSERKLEHTSTSNYESYEDNVDQRAEIFIQNFRRHLRFETQLSLQSRYYGVNGFETE 106
            E+   RKLE  S+S Y  YE++VDQRAEIFI+NFRR LR E Q+SLQ RYY VN +ETE
Sbjct: 61  AESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETE 120

BLAST of HG10002956 vs. ExPASy TrEMBL
Match: A0A0A0L6A3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004520 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 9.4e-13
Identity = 58/108 (53.70%), Postives = 71/108 (65.74%), Query Frame = 0

Query: 8   MASRLKKTLKKLSAFVR-----RQRSRRMRINVLDDQGRIVENCSERKLEHTSTSNYES- 67
           MA RL++TL KL AF+R     R+RS     NVL+D      + + R LE  S+S YES 
Sbjct: 1   MALRLEETLNKLKAFLRLCLLLRRRSIYRTRNVLED------DQTARNLERDSSSRYESC 60

Query: 68  --YEDNVDQRAEIFIQNFRRHLRFETQLSLQSRYYGV--NGFETEYEE 106
             +ED+VD RAEIFI+NFRR LR E Q+SLQ R YGV  N FET+YEE
Sbjct: 61  EEFEDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETDYEE 102

BLAST of HG10002956 vs. ExPASy TrEMBL
Match: A0A6J1CW64 (uncharacterized protein LOC111014780 OS=Momordica charantia OX=3673 GN=LOC111014780 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.7e-12
Identity = 55/125 (44.00%), Postives = 75/125 (60.00%), Query Frame = 0

Query: 1   MGEKKSPMASRLKKTLKKLSAFV---------RRQRSRRMRI-----------NVLDDQG 60
           M EKKSP+  RLKK ++K++A +         RR+ S R+R            + L+D+ 
Sbjct: 1   MAEKKSPLMPRLKKAVRKITALLRLNLSLCLARRRPSGRLRSFSFSDRTVGLRSFLEDE- 60

Query: 61  RIVENCSERKLEHTSTSNYESYEDNVDQRAEIFIQNFRRHLRFETQLSLQSRYYGVNGFE 106
            I ENCS R+LE  S+  Y + ED+VD+R++IFI NF R LR E Q+SLQ RYY +N   
Sbjct: 61  EIGENCSMRRLERASSLRYGNAEDDVDKRSQIFIDNFLRRLRLERQISLQLRYYRINSSG 120

BLAST of HG10002956 vs. ExPASy TrEMBL
Match: A0A2C9UBN9 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G135500 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.5e-05
Identity = 42/121 (34.71%), Postives = 61/121 (50.41%), Query Frame = 0

Query: 1   MGEKKSPMASRLKKTLKKL-------------SAFVRRQRSRRMRINVLDDQG-----RI 60
           MG K   +   LK+ +KKL             ++ +R    RR R++  D  G       
Sbjct: 1   MGRKNWTVLGHLKRAVKKLNFLLSFNLRRWRVASILRNVSRRRRRLSFNDRLGLHGCIED 60

Query: 61  VENCSERKLEHTSTSNYESYEDNVDQRAEIFIQNFRRHLRFETQLSLQSRYYGVNGFETE 104
           VE+   +++     +   + ED++DQRAEIFI+NFRR L  E Q+SLQ RYY  N F  +
Sbjct: 61  VESDENKRVRALQRTRSYASEDDIDQRAEIFIENFRRQLLLERQISLQLRYYRGNSFTRD 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0052985.16.0e-2259.02hypothetical protein E6C27_scaffold344G00960 [Cucumis melo var. makuwa] >TYK1144... [more]
XP_011652707.15.3e-1856.03uncharacterized protein LOC105435054 [Cucumis sativus][more]
KAE8650012.14.2e-1556.48hypothetical protein Csa_009473 [Cucumis sativus][more]
KAG6596691.11.2e-1450.00hypothetical protein SDJN03_09871, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7015798.12.1e-1449.17hypothetical protein SDJN02_23436, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CHZ52.9e-2259.02Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0L4Z81.1e-2157.72Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004530 PE=4 SV=1[more]
A0A0A0L6A39.4e-1353.70Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004520 PE=4 SV=1[more]
A0A6J1CW642.7e-1244.00uncharacterized protein LOC111014780 OS=Momordica charantia OX=3673 GN=LOC111014... [more]
A0A2C9UBN95.5e-0534.71Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G135500 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008480Protein of unknown function DUF761, plantPFAMPF05553DUF761coord: 64..93
e-value: 3.3E-6
score: 26.5
NoneNo IPR availablePANTHERPTHR33098:SF64OS08G0448100 PROTEINcoord: 11..102
NoneNo IPR availablePANTHERPTHR33098COTTON FIBER (DUF761)coord: 11..102

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10002956.1HG10002956.1mRNA