HG10002956 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGAGAGAAGAAATCGCCAATGGCTTCCCGCTTGAAGAAGACACTGAAGAAACTCAGTGCATTTGTTCGCCGCCAACGTTCCCGACGGATGCGGATCAATGTCTTGGATGATCAAGGGAGAATCGTTGAGAATTGTTCCGAGAGAAAGCTTGAACATACTTCCACTTCAAATTACGAAAGCTATGAAGACAATGTCGATCAGCGAGCAGAGATTTTCATCCAGAATTTTCGACGTCATTTGAGGTTTGAAACACAACTTTCTTTGCAATCGAGGTACTATGGAGTTAATGGCTTTGAAACAGAGTATGAAGAGTGA ATGGGAGAGAAGAAATCGCCAATGGCTTCCCGCTTGAAGAAGACACTGAAGAAACTCAGTGCATTTGTTCGCCGCCAACGTTCCCGACGGATGCGGATCAATGTCTTGGATGATCAAGGGAGAATCGTTGAGAATTGTTCCGAGAGAAAGCTTGAACATACTTCCACTTCAAATTACGAAAGCTATGAAGACAATGTCGATCAGCGAGCAGAGATTTTCATCCAGAATTTTCGACGTCATTTGAGGTTTGAAACACAACTTTCTTTGCAATCGAGGTACTATGGAGTTAATGGCTTTGAAACAGAGTATGAAGAGTGA ATGGGAGAGAAGAAATCGCCAATGGCTTCCCGCTTGAAGAAGACACTGAAGAAACTCAGTGCATTTGTTCGCCGCCAACGTTCCCGACGGATGCGGATCAATGTCTTGGATGATCAAGGGAGAATCGTTGAGAATTGTTCCGAGAGAAAGCTTGAACATACTTCCACTTCAAATTACGAAAGCTATGAAGACAATGTCGATCAGCGAGCAGAGATTTTCATCCAGAATTTTCGACGTCATTTGAGGTTTGAAACACAACTTTCTTTGCAATCGAGGTACTATGGAGTTAATGGCTTTGAAACAGAGTATGAAGAGTGA MGEKKSPMASRLKKTLKKLSAFVRRQRSRRMRINVLDDQGRIVENCSERKLEHTSTSNYESYEDNVDQRAEIFIQNFRRHLRFETQLSLQSRYYGVNGFETEYEE Homology
BLAST of HG10002956 vs. NCBI nr
Match: KAA0052985.1 (hypothetical protein E6C27_scaffold344G00960 [Cucumis melo var. makuwa] >TYK11441.1 hypothetical protein E5676_scaffold139G00970 [Cucumis melo var. makuwa]) HSP 1 Score: 114.4 bits (285), Expect = 6.0e-22 Identity = 72/122 (59.02%), Postives = 84/122 (68.85%), Query Frame = 0
BLAST of HG10002956 vs. NCBI nr
Match: XP_011652707.1 (uncharacterized protein LOC105435054 [Cucumis sativus]) HSP 1 Score: 101.3 bits (251), Expect = 5.3e-18 Identity = 65/116 (56.03%), Postives = 77/116 (66.38%), Query Frame = 0
BLAST of HG10002956 vs. NCBI nr
Match: KAE8650012.1 (hypothetical protein Csa_009473 [Cucumis sativus]) HSP 1 Score: 91.7 bits (226), Expect = 4.2e-15 Identity = 61/108 (56.48%), Postives = 71/108 (65.74%), Query Frame = 0
BLAST of HG10002956 vs. NCBI nr
Match: KAG6596691.1 (hypothetical protein SDJN03_09871, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028225.1 hypothetical protein SDJN02_09405, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 90.1 bits (222), Expect = 1.2e-14 Identity = 60/120 (50.00%), Postives = 77/120 (64.17%), Query Frame = 0
BLAST of HG10002956 vs. NCBI nr
Match: KAG7015798.1 (hypothetical protein SDJN02_23436, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 89.4 bits (220), Expect = 2.1e-14 Identity = 59/120 (49.17%), Postives = 73/120 (60.83%), Query Frame = 0
BLAST of HG10002956 vs. ExPASy TrEMBL
Match: A0A5D3CHZ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00970 PE=4 SV=1) HSP 1 Score: 114.4 bits (285), Expect = 2.9e-22 Identity = 72/122 (59.02%), Postives = 84/122 (68.85%), Query Frame = 0
BLAST of HG10002956 vs. ExPASy TrEMBL
Match: A0A0A0L4Z8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004530 PE=4 SV=1) HSP 1 Score: 112.5 bits (280), Expect = 1.1e-21 Identity = 71/123 (57.72%), Postives = 83/123 (67.48%), Query Frame = 0
BLAST of HG10002956 vs. ExPASy TrEMBL
Match: A0A0A0L6A3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004520 PE=4 SV=1) HSP 1 Score: 82.8 bits (203), Expect = 9.4e-13 Identity = 58/108 (53.70%), Postives = 71/108 (65.74%), Query Frame = 0
BLAST of HG10002956 vs. ExPASy TrEMBL
Match: A0A6J1CW64 (uncharacterized protein LOC111014780 OS=Momordica charantia OX=3673 GN=LOC111014780 PE=4 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 2.7e-12 Identity = 55/125 (44.00%), Postives = 75/125 (60.00%), Query Frame = 0
BLAST of HG10002956 vs. ExPASy TrEMBL
Match: A0A2C9UBN9 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G135500 PE=4 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 5.5e-05 Identity = 42/121 (34.71%), Postives = 61/121 (50.41%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
|