Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAACAGATCATCTTGTTGATGACTGGAAGAAGTTGAGATTATCAGAGGAGGAAAGGGAGACCAAGATTCAACTGGATCTACAGCTTGATTCTCTTAATCATGGTCATTTGGATCACTACTTGGTGGGAAAACTCCTGATGTCTAGAATCATTGCACCTGGTGCAATAAGGAATGCGTTTGCCAATGCCTGGAGGACAAGATTAAGTTTTAGTGTTGGTAATCTTGGAAAGAATCTTTACCTGATTAAATTTTACTCAAGAAAAGACAGAGAATGGATCTTTAAATTGGGGTCGTGGTTATTTGATAATTCGTTTTTGGTGCTGGAGGTTCCAGAGGCAAACGTCAAACTCTCACAATTATCATTCCATAAGGTGGCTTTCTGGATGCGTTTAATGGACATTCCCCTTAGCTTTCAAAACAAGACTATGGCAAAACGGCTGGGAGATGTCATAGGAGAGTTTTTAGATGTTGACTGTGATCAGGATAACTTTTGCTGGGGTGAAAGTTTGAGAATCAAGGTTTTGTTAGACATTTCTAAACCCTTGAGAAGAGGAATCTTGATTGAATTAGGGGACGATCATACGAGTACCGGATTGATATAA
mRNA sequence
ATGGAAACAGATCATCTTGTTGATGACTGGAAGAAGTTGAGATTATCAGAGGAGGAAAGGGAGACCAAGATTCAACTGGATCTACAGCTTGATTCTCTTAATCATGGTCATTTGGATCACTACTTGGTGGGAAAACTCCTGATGTCTAGAATCATTGCACCTGGTGCAATAAGGAATGCGTTTGCCAATGCCTGGAGGACAAGATTAAGTTTTAGTGTTGGTAATCTTGGAAAGAATCTTTACCTGATTAAATTTTACTCAAGAAAAGACAGAGAATGGATCTTTAAATTGGGGTCGTGGTTATTTGATAATTCGTTTTTGGTGCTGGAGGTTCCAGAGGCAAACGTCAAACTCTCACAATTATCATTCCATAAGGTGGCTTTCTGGATGCGTTTAATGGACATTCCCCTTAGCTTTCAAAACAAGACTATGGCAAAACGGCTGGGAGATGTCATAGGAGAGTTTTTAGATGTTGACTGTGATCAGGATAACTTTTGCTGGGGTGAAAGTTTGAGAATCAAGGTTTTGTTAGACATTTCTAAACCCTTGAGAAGAGGAATCTTGATTGAATTAGGGGACGATCATACGAGTACCGGATTGATATAA
Coding sequence (CDS)
ATGGAAACAGATCATCTTGTTGATGACTGGAAGAAGTTGAGATTATCAGAGGAGGAAAGGGAGACCAAGATTCAACTGGATCTACAGCTTGATTCTCTTAATCATGGTCATTTGGATCACTACTTGGTGGGAAAACTCCTGATGTCTAGAATCATTGCACCTGGTGCAATAAGGAATGCGTTTGCCAATGCCTGGAGGACAAGATTAAGTTTTAGTGTTGGTAATCTTGGAAAGAATCTTTACCTGATTAAATTTTACTCAAGAAAAGACAGAGAATGGATCTTTAAATTGGGGTCGTGGTTATTTGATAATTCGTTTTTGGTGCTGGAGGTTCCAGAGGCAAACGTCAAACTCTCACAATTATCATTCCATAAGGTGGCTTTCTGGATGCGTTTAATGGACATTCCCCTTAGCTTTCAAAACAAGACTATGGCAAAACGGCTGGGAGATGTCATAGGAGAGTTTTTAGATGTTGACTGTGATCAGGATAACTTTTGCTGGGGTGAAAGTTTGAGAATCAAGGTTTTGTTAGACATTTCTAAACCCTTGAGAAGAGGAATCTTGATTGAATTAGGGGACGATCATACGAGTACCGGATTGATATAA
Protein sequence
METDHLVDDWKKLRLSEEERETKIQLDLQLDSLNHGHLDHYLVGKLLMSRIIAPGAIRNAFANAWRTRLSFSVGNLGKNLYLIKFYSRKDREWIFKLGSWLFDNSFLVLEVPEANVKLSQLSFHKVAFWMRLMDIPLSFQNKTMAKRLGDVIGEFLDVDCDQDNFCWGESLRIKVLLDISKPLRRGILIELGDDHTSTGLI
Homology
BLAST of HG10002947 vs. NCBI nr
Match:
XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])
HSP 1 Score: 177.6 bits (449), Expect = 1.1e-40
Identity = 83/191 (43.46%), Postives = 124/191 (64.92%), Query Frame = 0
Query: 1 METDHLVDDWKKLRLSEEERETKIQLDLQLDSLNHGHLDHYLVGKLLMSRIIAPGAIRNA 60
M+ ++L+ DW+K +L+ EE E + +D+ + L + LVGKLL RII+ +
Sbjct: 1 MDHENLLADWQKFKLTSEEDEIAMDVDVDAVKMAEQGLAYSLVGKLLAKRIISADVLSRV 60
Query: 61 FANAWRTRLSFSVGNLGKNLYLIKFYSRKDREWIFKLGSWLFDNSFLVLEVPEANVKLSQ 120
AW+ +V ++GKNL+L F D + K G W FD + +VL+ P ++ +S+
Sbjct: 61 LLLAWKVEHQLTVESIGKNLFLFHFCRECDMNRVMKTGPWFFDKALIVLQKPCSSKNISE 120
Query: 121 LSFHKVAFWMRLMDIPLSFQNKTMAKRLGDVIGEFLDVDCDQDNFCWGESLRIKVLLDIS 180
L F++VAFW+ L D+P+S+ NKTMA RLG+ IG F+DVDC++ F WG SLRI+VL+DI+
Sbjct: 121 LEFNRVAFWIHLFDLPMSWLNKTMAIRLGNAIGNFVDVDCNEKGFSWGASLRIRVLIDIT 180
Query: 181 KPLRRGILIEL 192
KPLRRGI I +
Sbjct: 181 KPLRRGIKINI 191
BLAST of HG10002947 vs. NCBI nr
Match:
XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])
HSP 1 Score: 155.6 bits (392), Expect = 4.5e-34
Identity = 78/192 (40.62%), Postives = 112/192 (58.33%), Query Frame = 0
Query: 1 METDHLVDDWKKLRLSEEERETKIQLDLQLDSLNHGHLDHYLVGKLLMSRIIAPGAIRNA 60
M T L+++WK +L+ EE ET I +D + L+ LVGKL + R I ++N
Sbjct: 1 MATFDLLEEWKNFKLTSEEEETAIDVDASAPATTGSRLEQILVGKLFIKRPITCPVMKNT 60
Query: 61 FANAWR-TRLSFSVGNLGKNLYLIKFYSRKDREWIFKLGSWLFDNSFLVLEVPEANVKLS 120
AW+ +F V +LG NL+L F DR I+K G W FD + +++ P A + S
Sbjct: 61 MRTAWKLENNAFEVQSLGYNLFLFSFARALDRNKIYKSGPWTFDRTLVLINKPVALIPPS 120
Query: 121 QLSFHKVAFWMRLMDIPLSFQNKTMAKRLGDVIGEFLDVDCDQDNFCWGESLRIKVLLDI 180
+L F K+ W+R D+PL + MA RLG+ +G F + DCD N WG +LR++V+LDI
Sbjct: 121 ELDFTKLPIWVRFFDLPLGCITRDMAIRLGNALGGFEEADCDDLNPDWGSNLRVRVMLDI 180
Query: 181 SKPLRRGILIEL 192
SKPLRRGI + L
Sbjct: 181 SKPLRRGIKLNL 192
BLAST of HG10002947 vs. NCBI nr
Match:
XP_022132681.1 (uncharacterized protein LOC111005481 [Momordica charantia])
HSP 1 Score: 139.4 bits (350), Expect = 3.3e-29
Identity = 68/192 (35.42%), Postives = 108/192 (56.25%), Query Frame = 0
Query: 1 METDHLVDDWKKLRLSEEERETKIQLDLQLDSLNHGHLDHYLVGKLLMSRIIAPGAIRNA 60
M +L+++WK +L+ EE + + +D L+ L+ KLL R I+ ++N
Sbjct: 1 MAASNLLEEWKNFKLTSEEDKIAVDIDSSALEGTGKCLELSLICKLLSKRSISCTVLKNT 60
Query: 61 FANAWRTRL-SFSVGNLGKNLYLIKFYSRKDREWIFKLGSWLFDNSFLVLEVPEANVKLS 120
AW+ +FSV +G N++L F DR I ++G W FD + ++++ P + K
Sbjct: 61 LKIAWKLDCKAFSVDIIGFNIFLFNFNRSSDRNRILRMGPWTFDRALIIIDNPVSLTKPL 120
Query: 121 QLSFHKVAFWMRLMDIPLSFQNKTMAKRLGDVIGEFLDVDCDQDNFCWGESLRIKVLLDI 180
+ F V+ W+ D+ L+ NKTMA RLG+ IG F DV+ + +NFCWG LR++V D+
Sbjct: 121 DMDFRNVSLWVHFFDLSLACMNKTMATRLGNAIGLFEDVESNANNFCWGSCLRVRVRFDV 180
Query: 181 SKPLRRGILIEL 192
KPL RGI + L
Sbjct: 181 MKPLHRGIKLNL 192
BLAST of HG10002947 vs. NCBI nr
Match:
XP_038688762.1 (uncharacterized protein LOC119987929 [Tripterygium wilfordii])
HSP 1 Score: 127.9 bits (320), Expect = 1.0e-25
Identity = 59/180 (32.78%), Postives = 103/180 (57.22%), Query Frame = 0
Query: 10 WKKLRLSEEERETKIQLDLQLDSLNHGHLDHYLVGKLLMSRIIAPGAIRNAFANAWRTRL 69
W KL++++EE++ I +D + + + GK++M R IA + N W+T
Sbjct: 8 WSKLKVTDEEKQ-GISVDQEDMPFSKDSTRRGVFGKVVMDRFIATEVVARNMMNVWKTSA 67
Query: 70 SFSVGNLGKNLYLIKFYSRKDREWIFKLGSWLFDNSFLVLEVPEANVKLSQLSFHKVAFW 129
+LGKN++ I F+S D+ + + WLFD S LVL+ E+ V + L F FW
Sbjct: 68 PLKFHDLGKNIFAIIFHSEHDKRRVMEGRPWLFDRSLLVLKEMESEVPIKDLQFDTEWFW 127
Query: 130 MRLMDIPLSFQNKTMAKRLGDVIGEFLDVDCDQDNFCWGESLRIKVLLDISKPLRRGILI 189
++L ++PL+ ++ + +++G IG+ ++VD D + CWG LR+++ L + KPL RG +I
Sbjct: 128 VQLHNLPLAGMSRALGEKIGGTIGDVVEVDADPEGLCWGRYLRVRICLSLLKPLTRGKMI 186
BLAST of HG10002947 vs. NCBI nr
Match:
TXG63523.1 (hypothetical protein EZV62_010517 [Acer yangbiense])
HSP 1 Score: 126.7 bits (317), Expect = 2.2e-25
Identity = 67/192 (34.90%), Postives = 114/192 (59.38%), Query Frame = 0
Query: 1 METDHLVDDWKKLRLSEEERET-KIQLDLQLDSLNHGHLDHYLVGKLLMSRIIAPGAIRN 60
M T L + L + +E+ E +I L+ D + ++HYLVGK+L SR + A ++
Sbjct: 1 MGTKELARLCENLSIRDEDSEIHQISEGLERDGVE--DVNHYLVGKVLSSRRVNREAFKS 60
Query: 61 AFANAWRTRLSFSVGNLGKNLYLIKFYSRKDREWIFKLGSWLFDNSFLVLEVPEANVKLS 120
W + + +G+N+++ F + DR+ I+ G W FD S +VLE PE +S
Sbjct: 61 IIEQLWSPFGTVDIEVVGENIFMFYFNNPIDRDRIWNRGPWHFDRSLIVLEKPEGTGNIS 120
Query: 121 QLSFHKVAFWMRLMDIPLSFQNKTMAKRLGDVIGEFLDVDCDQDNFCWGESLRIKVLLDI 180
QLSF + FW+++ DIP+ N+ MA+ L + IGE +D+ + + CWG+ L+++VL+DI
Sbjct: 121 QLSFSRAEFWVQIHDIPIMCMNRRMARWLAEQIGEVIDIPTESMD-CWGKYLKVRVLIDI 180
Query: 181 SKPLRRGILIEL 192
S+PL+R + ++L
Sbjct: 181 SRPLKRWLRLKL 189
BLAST of HG10002947 vs. ExPASy TrEMBL
Match:
A0A6J1DU55 (uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023135 PE=4 SV=1)
HSP 1 Score: 177.6 bits (449), Expect = 5.3e-41
Identity = 83/191 (43.46%), Postives = 124/191 (64.92%), Query Frame = 0
Query: 1 METDHLVDDWKKLRLSEEERETKIQLDLQLDSLNHGHLDHYLVGKLLMSRIIAPGAIRNA 60
M+ ++L+ DW+K +L+ EE E + +D+ + L + LVGKLL RII+ +
Sbjct: 1 MDHENLLADWQKFKLTSEEDEIAMDVDVDAVKMAEQGLAYSLVGKLLAKRIISADVLSRV 60
Query: 61 FANAWRTRLSFSVGNLGKNLYLIKFYSRKDREWIFKLGSWLFDNSFLVLEVPEANVKLSQ 120
AW+ +V ++GKNL+L F D + K G W FD + +VL+ P ++ +S+
Sbjct: 61 LLLAWKVEHQLTVESIGKNLFLFHFCRECDMNRVMKTGPWFFDKALIVLQKPCSSKNISE 120
Query: 121 LSFHKVAFWMRLMDIPLSFQNKTMAKRLGDVIGEFLDVDCDQDNFCWGESLRIKVLLDIS 180
L F++VAFW+ L D+P+S+ NKTMA RLG+ IG F+DVDC++ F WG SLRI+VL+DI+
Sbjct: 121 LEFNRVAFWIHLFDLPMSWLNKTMAIRLGNAIGNFVDVDCNEKGFSWGASLRIRVLIDIT 180
Query: 181 KPLRRGILIEL 192
KPLRRGI I +
Sbjct: 181 KPLRRGIKINI 191
BLAST of HG10002947 vs. ExPASy TrEMBL
Match:
A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)
HSP 1 Score: 155.6 bits (392), Expect = 2.2e-34
Identity = 78/192 (40.62%), Postives = 112/192 (58.33%), Query Frame = 0
Query: 1 METDHLVDDWKKLRLSEEERETKIQLDLQLDSLNHGHLDHYLVGKLLMSRIIAPGAIRNA 60
M T L+++WK +L+ EE ET I +D + L+ LVGKL + R I ++N
Sbjct: 1 MATFDLLEEWKNFKLTSEEEETAIDVDASAPATTGSRLEQILVGKLFIKRPITCPVMKNT 60
Query: 61 FANAWR-TRLSFSVGNLGKNLYLIKFYSRKDREWIFKLGSWLFDNSFLVLEVPEANVKLS 120
AW+ +F V +LG NL+L F DR I+K G W FD + +++ P A + S
Sbjct: 61 MRTAWKLENNAFEVQSLGYNLFLFSFARALDRNKIYKSGPWTFDRTLVLINKPVALIPPS 120
Query: 121 QLSFHKVAFWMRLMDIPLSFQNKTMAKRLGDVIGEFLDVDCDQDNFCWGESLRIKVLLDI 180
+L F K+ W+R D+PL + MA RLG+ +G F + DCD N WG +LR++V+LDI
Sbjct: 121 ELDFTKLPIWVRFFDLPLGCITRDMAIRLGNALGGFEEADCDDLNPDWGSNLRVRVMLDI 180
Query: 181 SKPLRRGILIEL 192
SKPLRRGI + L
Sbjct: 181 SKPLRRGIKLNL 192
BLAST of HG10002947 vs. ExPASy TrEMBL
Match:
A0A6J1BSZ1 (uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005481 PE=4 SV=1)
HSP 1 Score: 139.4 bits (350), Expect = 1.6e-29
Identity = 68/192 (35.42%), Postives = 108/192 (56.25%), Query Frame = 0
Query: 1 METDHLVDDWKKLRLSEEERETKIQLDLQLDSLNHGHLDHYLVGKLLMSRIIAPGAIRNA 60
M +L+++WK +L+ EE + + +D L+ L+ KLL R I+ ++N
Sbjct: 1 MAASNLLEEWKNFKLTSEEDKIAVDIDSSALEGTGKCLELSLICKLLSKRSISCTVLKNT 60
Query: 61 FANAWRTRL-SFSVGNLGKNLYLIKFYSRKDREWIFKLGSWLFDNSFLVLEVPEANVKLS 120
AW+ +FSV +G N++L F DR I ++G W FD + ++++ P + K
Sbjct: 61 LKIAWKLDCKAFSVDIIGFNIFLFNFNRSSDRNRILRMGPWTFDRALIIIDNPVSLTKPL 120
Query: 121 QLSFHKVAFWMRLMDIPLSFQNKTMAKRLGDVIGEFLDVDCDQDNFCWGESLRIKVLLDI 180
+ F V+ W+ D+ L+ NKTMA RLG+ IG F DV+ + +NFCWG LR++V D+
Sbjct: 121 DMDFRNVSLWVHFFDLSLACMNKTMATRLGNAIGLFEDVESNANNFCWGSCLRVRVRFDV 180
Query: 181 SKPLRRGILIEL 192
KPL RGI + L
Sbjct: 181 MKPLHRGIKLNL 192
BLAST of HG10002947 vs. ExPASy TrEMBL
Match:
A0A803MW53 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)
HSP 1 Score: 130.2 bits (326), Expect = 9.8e-27
Identity = 63/191 (32.98%), Postives = 116/191 (60.73%), Query Frame = 0
Query: 4 DHLVDDWKKLRLSEEERETKIQLDLQL-DSLNHGHLDHYLVGKLLMSRIIAPGAIRNAFA 63
+ L+ DW++L+L++EE Q D+ L + +++ + LVGKLL + A++
Sbjct: 3 ESLMKDWERLKLTDEENVIFGQSDVSLTEEMSNTKISLSLVGKLLTKKSFNVEAMKRVLK 62
Query: 64 NAWRTRLSFSVGNLGKNLYLIKFYSRKDREWIFKLGSWLFDNSFLVLEVPEANVKLSQLS 123
WR + ++ + N+++ +F++ DR+ + + W+FDN L+L+ A + S++S
Sbjct: 63 TLWRIDDNVAIRGVNTNIFVFQFFNIDDRKKVLEGRPWVFDNQILLLKEMCATEQPSEVS 122
Query: 124 FHKVAFWMRLMDIPLSFQNKTMAKRLGDVIGEFLDVDCDQDNFCWGESLRIKVLLDISKP 183
F FW+RL+D+P ++ +A +G+ IGE +DVD + D CW E +R+KV+++I+KP
Sbjct: 123 FDACPFWIRLLDVPFGMRSSRVAHEIGNCIGECIDVD-ESDPLCWDEFMRVKVMVNINKP 182
Query: 184 LRRGILIELGD 194
LRRG+ I + D
Sbjct: 183 LRRGMKIAVED 192
BLAST of HG10002947 vs. ExPASy TrEMBL
Match:
A0A5C7I1Z5 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_010517 PE=4 SV=1)
HSP 1 Score: 126.7 bits (317), Expect = 1.1e-25
Identity = 67/192 (34.90%), Postives = 114/192 (59.38%), Query Frame = 0
Query: 1 METDHLVDDWKKLRLSEEERET-KIQLDLQLDSLNHGHLDHYLVGKLLMSRIIAPGAIRN 60
M T L + L + +E+ E +I L+ D + ++HYLVGK+L SR + A ++
Sbjct: 1 MGTKELARLCENLSIRDEDSEIHQISEGLERDGVE--DVNHYLVGKVLSSRRVNREAFKS 60
Query: 61 AFANAWRTRLSFSVGNLGKNLYLIKFYSRKDREWIFKLGSWLFDNSFLVLEVPEANVKLS 120
W + + +G+N+++ F + DR+ I+ G W FD S +VLE PE +S
Sbjct: 61 IIEQLWSPFGTVDIEVVGENIFMFYFNNPIDRDRIWNRGPWHFDRSLIVLEKPEGTGNIS 120
Query: 121 QLSFHKVAFWMRLMDIPLSFQNKTMAKRLGDVIGEFLDVDCDQDNFCWGESLRIKVLLDI 180
QLSF + FW+++ DIP+ N+ MA+ L + IGE +D+ + + CWG+ L+++VL+DI
Sbjct: 121 QLSFSRAEFWVQIHDIPIMCMNRRMARWLAEQIGEVIDIPTESMD-CWGKYLKVRVLIDI 180
Query: 181 SKPLRRGILIEL 192
S+PL+R + ++L
Sbjct: 181 SRPLKRWLRLKL 189
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022156185.1 | 1.1e-40 | 43.46 | uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha... | [more] |
XP_022158377.1 | 4.5e-34 | 40.63 | uncharacterized protein LOC111024874 [Momordica charantia] | [more] |
XP_022132681.1 | 3.3e-29 | 35.42 | uncharacterized protein LOC111005481 [Momordica charantia] | [more] |
XP_038688762.1 | 1.0e-25 | 32.78 | uncharacterized protein LOC119987929 [Tripterygium wilfordii] | [more] |
TXG63523.1 | 2.2e-25 | 34.90 | hypothetical protein EZV62_010517 [Acer yangbiense] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1DU55 | 5.3e-41 | 43.46 | uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023... | [more] |
A0A6J1DX30 | 2.2e-34 | 40.63 | uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... | [more] |
A0A6J1BSZ1 | 1.6e-29 | 35.42 | uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005... | [more] |
A0A803MW53 | 9.8e-27 | 32.98 | Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | [more] |
A0A5C7I1Z5 | 1.1e-25 | 34.90 | Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_010517 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |