HG10002907 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10002907
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	SKP1-like protein
Location	Chr11: 15303200 .. 15304945 (-)
RNA-Seq Expression	HG10002907
Synteny	HG10002907

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTCCTCCAAGAAGATCACTCTCAAGAGCTCTGATGGCGACTCTTTCGAAGTCGACGAGGCCGTTGCCCTCCAGTCTCAGACCATCCGCCACATGATCGAGGACGATTGCGCCGATAACGGCATCCCTCTTCCTAACGTCACCAGCAAGATCCTCGCCAAGGTCATCGAATACTGCCACAAGCACGTCGATGCTTCCTCCGCCGATCCCCGCCCCTCCGAGGACGATCTCAAGGCCTGGGACCGGGACTTCGTTAATGTCGACCAGGCCACTCTTTTCGATCTCATTCTGGTAAAACCTTTTCTTCCCGCCTTACATCGATCCACTCTATTATCTAGGGTTTATCTGTTTAGTATGATTTTTTTTTCAAGAATCAACATTAGAGATCCTGCAAACAATTGCTTTCATCTTCTCTATCGCTTATTATTGTTCTTCTTTATCTGTCATGTGCTGTTAGGGGTCTGTAATGTTTGATGTTTTAGAATTGGAACGTTGGTTTTGAAGGAAATTTCTACTGGAAATTATTTAGTATTGAAGTTATCTATTGTTGATCAATTCATATGGTGTCTAAAAAATGGTACAAAATTCAGTATGATAGGTATGGTCTTTTCCCTTTGAGGAATGAATCCGGTGATGCAAAAAGCTTTTGTTATCTTTATCTTTTGCCGTTCTTGCTGAAATCGGTACTAATGGACATCTGTATATGGTGTCGTTGTCACTTTTTTTCAAAGAAACCAAACATTCGTTCAAAAAATAATGAAAGAATACCATATATGAAAGAATACAAGGGCAACCAAAAAACAAGCCGAGACCATCATCATAATTACACAACAGTCTAGTGACCAACGTTCAAACAGAAGCATTAAACCTCACTAACTCTAAAACCTCCTCTCTAAACTTCTCCACATCCCTAAAATGTTTACTATAAGAAATACGCTTACTATAACAAAGTATTCTACTCCCTGAAAAGGGAGCTCAAAACCACCTTGACCAAGAAAGAACAACCATCCCTATTCCGAGCTCCATTAATCCCAAAAGAACTCTTCATTGATTCTAAAGAAATTCGCAAACTGACACTCCCACAACAAATGACCCAGATCCTCCTGATGCCTCATGCAGAGCACCATTGCAAACCCAAGCTGAAGGAGGCATACCTTCAGACATAATCCAAGGTATTGACACTCTCTCAGTCAAACTTGCCAAGCAAAAAGCTTAACCTTTTCTCAAACTTTTATCATCCACAAAGAGGAGAAGACTAAAGCCTTGGGACAGAGGGCAATGAAAGCCCATAGAAATTGAAGAAGAATGGTCACGAGATGACAACACCTAAGTCACAGGATGCATCTTCATTGTCAAATGATTGTAGCTTAGGTTAATCTTGATAAACTCGATTTGTTTTCCATGGTTCTTCTATATGTCAACAGCTTTGATTTACCATATTCTACACTTGAGTTGTGTTCTTGTTGCAGAGAATTTCAAGTTGGCTGGGGATTTTTGACTATTATTGTCGTTCATAGTTGTTTCTTGATTTGACGCCATTTAAAATTCTCTCCTCATTCTACAATGCAGGCTGCAAATTTTCTGAACATCAAGAGCTTGTTAGACCTGACATGTCAAACTGTAGCTGACATGATCAAGGGAAAAGACCCAGAGGAGATCAGAAAGACCTTTAACATCAAGAACGATTTCACACCGGAAGAAGAGGAGGAAGTTCGCAGGGAGAATCAGTGGGCTTTTGAATGA

mRNA sequence

ATGTCCTCCTCCAAGAAGATCACTCTCAAGAGCTCTGATGGCGACTCTTTCGAAGTCGACGAGGCCGTTGCCCTCCAGTCTCAGACCATCCGCCACATGATCGAGGACGATTGCGCCGATAACGGCATCCCTCTTCCTAACGTCACCAGCAAGATCCTCGCCAAGGTCATCGAATACTGCCACAAGCACGTCGATGCTTCCTCCGCCGATCCCCGCCCCTCCGAGGACGATCTCAAGGCCTGGGACCGGGACTTCGTTAATGTCGACCAGGCCACTCTTTTCGATCTCATTCTGGCTGCAAATTTTCTGAACATCAAGAGCTTGTTAGACCTGACATGTCAAACTGTAGCTGACATGATCAAGGGAAAAGACCCAGAGGAGATCAGAAAGACCTTTAACATCAAGAACGATTTCACACCGGAAGAAGAGGAGGAAGTTCGCAGGGAGAATCAGTGGGCTTTTGAATGA

Coding sequence (CDS)

ATGTCCTCCTCCAAGAAGATCACTCTCAAGAGCTCTGATGGCGACTCTTTCGAAGTCGACGAGGCCGTTGCCCTCCAGTCTCAGACCATCCGCCACATGATCGAGGACGATTGCGCCGATAACGGCATCCCTCTTCCTAACGTCACCAGCAAGATCCTCGCCAAGGTCATCGAATACTGCCACAAGCACGTCGATGCTTCCTCCGCCGATCCCCGCCCCTCCGAGGACGATCTCAAGGCCTGGGACCGGGACTTCGTTAATGTCGACCAGGCCACTCTTTTCGATCTCATTCTGGCTGCAAATTTTCTGAACATCAAGAGCTTGTTAGACCTGACATGTCAAACTGTAGCTGACATGATCAAGGGAAAAGACCCAGAGGAGATCAGAAAGACCTTTAACATCAAGAACGATTTCACACCGGAAGAAGAGGAGGAAGTTCGCAGGGAGAATCAGTGGGCTTTTGAATGA

Protein sequence

MSSSKKITLKSSDGDSFEVDEAVALQSQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCHKHVDASSADPRPSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTVADMIKGKDPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE

Homology

[Close]

BLAST of HG10002907 vs. NCBI nr
Match: XP_022965297.1 (SKP1-like protein 1A [Cucurbita maxima] >KAG6577790.1 SKP1-like protein 1A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015829.1 SKP1-like protein 1A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 294.7 bits (753), Expect = 4.8e-76
Identity = 147/155 (94.84%), Postives = 152/155 (98.06%), Query Frame = 0


Query: 1   MSSSKKITLKSSDGDSFEVDEAVALQSQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYC 60
           MSSSKKITLKSSDG+SFE+DE VAL+SQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYC
Sbjct: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYC 60

Query: 61  HKHVDASSADPRPSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTVADMI 120
           HKHVDASSADPR SE+DLKAWDRDFVNVDQATLFDLILAAN+LNIKSLLDLTCQTVADMI
Sbjct: 61  HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKDPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGK PEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of HG10002907 vs. NCBI nr
Match: XP_038903121.1 (SKP1-like protein 1A [Benincasa hispida])

HSP 1 Score: 294.3 bits (752), Expect = 6.2e-76
Identity = 149/155 (96.13%), Postives = 151/155 (97.42%), Query Frame = 0


Query: 1   MSSSKKITLKSSDGDSFEVDEAVALQSQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYC 60
           MSSSKKITLKSSDGDSFEVDEAVALQSQTIRHMIEDDCADNGIPLPNVTS ILAKVIEYC
Sbjct: 1   MSSSKKITLKSSDGDSFEVDEAVALQSQTIRHMIEDDCADNGIPLPNVTSNILAKVIEYC 60

Query: 61  HKHVDASSADPRPSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTVADMI 120
            KHVDASSADPR S+DDLKAWDRDFVNVDQATLFDLILAAN+LNIKSLLDLTCQTVADMI
Sbjct: 61  RKHVDASSADPRLSDDDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKDPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGK PEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of HG10002907 vs. NCBI nr
Match: XP_022923340.1 (SKP1-like protein 1A [Cucurbita moschata])

HSP 1 Score: 293.1 bits (749), Expect = 1.4e-75
Identity = 146/155 (94.19%), Postives = 151/155 (97.42%), Query Frame = 0


Query: 1   MSSSKKITLKSSDGDSFEVDEAVALQSQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYC 60
           MSSSKKITLKSSDG+SFE+DE VAL+SQTIRHMIEDDCADNGIPLPNVTSKIL KVIEYC
Sbjct: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILVKVIEYC 60

Query: 61  HKHVDASSADPRPSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTVADMI 120
           HKHVDASSADPR SE+DLKAWDRDFVNVDQATLFDLILAAN+LNIKSLLDLTCQTVADMI
Sbjct: 61  HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKDPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGK PEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of HG10002907 vs. NCBI nr
Match: XP_023553541.1 (SKP1-like protein 1A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 290.8 bits (743), Expect = 6.9e-75
Identity = 146/155 (94.19%), Postives = 151/155 (97.42%), Query Frame = 0


Query: 1   MSSSKKITLKSSDGDSFEVDEAVALQSQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYC 60
           MSSSKKITLKSSDG+SFE+DE VAL+SQTIRHMIEDDCADNGIPLPNVTSKILAKVIEY 
Sbjct: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYS 60

Query: 61  HKHVDASSADPRPSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTVADMI 120
           HKHVDASSADPR SE+DLKAWDRDFVNVDQATLFDLILAAN+LNIKSLLDLTCQTVADMI
Sbjct: 61  HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKDPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGK PEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of HG10002907 vs. NCBI nr
Match: XP_022145436.1 (SKP1-like protein 1A [Momordica charantia])

HSP 1 Score: 283.1 bits (723), Expect = 1.4e-72
Identity = 141/155 (90.97%), Postives = 150/155 (96.77%), Query Frame = 0


Query: 1   MSSSKKITLKSSDGDSFEVDEAVALQSQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYC 60
           MSSSKKI LKSSDG+ FEVDEAVAL+SQTIRHMIEDDCADNGIPLPNV+SKILAKVIEYC
Sbjct: 1   MSSSKKIILKSSDGEPFEVDEAVALESQTIRHMIEDDCADNGIPLPNVSSKILAKVIEYC 60

Query: 61  HKHVDASSADPRPSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTVADMI 120
            KHVDAS+++PR SE+DLKAWDRDFVNVDQATLFDLILAAN+LNIK+LLDLTCQTVADMI
Sbjct: 61  RKHVDASNSEPRASEEDLKAWDRDFVNVDQATLFDLILAANYLNIKNLLDLTCQTVADMI 120

Query: 121 KGKDPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGK PEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of HG10002907 vs. ExPASy Swiss-Prot
Match: Q6PL11 (SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 1.8e-65
Identity = 128/166 (77.11%), Postives = 139/166 (83.73%), Query Frame = 0


Query: 5   KKITLKSSDGDSFEVDEAVALQSQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCHKHV 64
           K ITLKSSDG+ FEV+EAVA++SQTIRHMIEDDCADNGIPLPNV SKIL+KVIEYC+KHV
Sbjct: 8   KMITLKSSDGEEFEVEEAVAMESQTIRHMIEDDCADNGIPLPNVNSKILSKVIEYCNKHV 67

Query: 65  ---------------DASSADPRPSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLL 124
                           A++A P PS +DLK WD DFV VDQATLFDLILAAN+LNIK LL
Sbjct: 68  HAAAAAASKAADDAASAAAAVPPPSGEDLKNWDADFVKVDQATLFDLILAANYLNIKGLL 127

Query: 125 DLTCQTVADMIKGKDPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           DLTCQTVADMIKGK PEEIRKTFNIKNDFTPEEEEE+RRENQWAFE
Sbjct: 128 DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEIRRENQWAFE 173

[Close]

BLAST of HG10002907 vs. ExPASy Swiss-Prot
Match: Q39255 (SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 2.3e-65
Identity = 124/159 (77.99%), Postives = 141/159 (88.68%), Query Frame = 0


Query: 3   SSKKITLKSSDGDSFEVDEAVALQSQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCHK 62
           S+KKI LKSSDG+SFEV+EAVAL+SQTI HM+EDDC DNG+PLPNVTSKILAKVIEYC +
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 63  HVDASSADPR------PSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTV 122
           HV+A+++          S+DDLKAWD DF+ +DQATLF+LILAAN+LNIK+LLDLTCQTV
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query: 123 ADMIKGKDPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           ADMIKGK PEEIR TFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of HG10002907 vs. ExPASy Swiss-Prot
Match: Q9FHW7 (SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 2.6e-64
Identity = 126/171 (73.68%), Postives = 143/171 (83.63%), Query Frame = 0


Query: 1   MSSSKKITLKSSDGDSFEVDEAVALQSQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYC 60
           MS+ +KITLKSSDG++FE+DEAVAL+SQTI+HMIEDDC DNGIPLPNVTSKIL+KVIEYC
Sbjct: 1   MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query: 61  HKHVDA-----SSADPR-----------PSEDDLKAWDRDFVNVDQATLFDLILAANFLN 120
            +HV+A     ++AD              S++DLK WD +F+ VDQ TLFDLILAAN+LN
Sbjct: 61  KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLN 120

Query: 121 IKSLLDLTCQTVADMIKGKDPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           IK LLDLTCQTVADMIKGK PEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of HG10002907 vs. ExPASy Swiss-Prot
Match: Q651E8 (SKP1-like protein 20 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP20 PE=1 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 2.7e-58
Identity = 120/165 (72.73%), Postives = 136/165 (82.42%), Query Frame = 0


Query: 7   ITLKSSDGDSFEVDEAVALQSQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCHKHVD- 66
           ITL+S +G  FEV EAVA++SQTIRHMIED CAD GIPLPNV++KIL+KVIEYC KHV+ 
Sbjct: 11  ITLRSCEGQVFEVAEAVAMESQTIRHMIEDKCADTGIPLPNVSAKILSKVIEYCSKHVEA 70

Query: 67  ----ASSAD---PRPS--------EDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLD 126
               A++AD   P P+        ED+LK +D +FV VDQ+TLFDLILAAN+LNIK LLD
Sbjct: 71  RGGAAAAADGDAPAPAAVEANKAVEDELKTFDAEFVKVDQSTLFDLILAANYLNIKGLLD 130

Query: 127 LTCQTVADMIKGKDPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           LTCQTVADMIKGK PEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 131 LTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 175

[Close]

BLAST of HG10002907 vs. ExPASy Swiss-Prot
Match: O49484 (SKP1-like protein 11 OS=Arabidopsis thaliana OX=3702 GN=ASK11 PE=1 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.3e-55
Identity = 112/153 (73.20%), Postives = 128/153 (83.66%), Query Frame = 0


Query: 3   SSKKITLKSSDGDSFEVDEAVALQSQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCHK 62
           SSK I L SSDG SFEV+EAVA+QSQTI HM+EDDC  +GIPL NV SKIL KVIEYC K
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  HVDASSADPRPSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTVADMIKG 122
           H     A+P  SE+DL  WD  F++++Q+T+F+LILAAN+LNIKSLLDLTCQTVADMIKG
Sbjct: 62  H-HVDEANP-ISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKG 121

Query: 123 KDPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           K PEEIR TFNI+NDFTPEEEE VR+ENQWAFE
Sbjct: 122 KTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]

BLAST of HG10002907 vs. ExPASy TrEMBL
Match: A0A6J1HJY3 (SKP1-like protein OS=Cucurbita maxima OX=3661 GN=LOC111465205 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.3e-76
Identity = 147/155 (94.84%), Postives = 152/155 (98.06%), Query Frame = 0


Query: 1   MSSSKKITLKSSDGDSFEVDEAVALQSQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYC 60
           MSSSKKITLKSSDG+SFE+DE VAL+SQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYC
Sbjct: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYC 60

Query: 61  HKHVDASSADPRPSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTVADMI 120
           HKHVDASSADPR SE+DLKAWDRDFVNVDQATLFDLILAAN+LNIKSLLDLTCQTVADMI
Sbjct: 61  HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKDPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGK PEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of HG10002907 vs. ExPASy TrEMBL
Match: A0A6J1EBI5 (SKP1-like protein OS=Cucurbita moschata OX=3662 GN=LOC111431062 PE=3 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 6.7e-76
Identity = 146/155 (94.19%), Postives = 151/155 (97.42%), Query Frame = 0


Query: 1   MSSSKKITLKSSDGDSFEVDEAVALQSQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYC 60
           MSSSKKITLKSSDG+SFE+DE VAL+SQTIRHMIEDDCADNGIPLPNVTSKIL KVIEYC
Sbjct: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILVKVIEYC 60

Query: 61  HKHVDASSADPRPSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTVADMI 120
           HKHVDASSADPR SE+DLKAWDRDFVNVDQATLFDLILAAN+LNIKSLLDLTCQTVADMI
Sbjct: 61  HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKDPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGK PEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of HG10002907 vs. ExPASy TrEMBL
Match: A0A6J1CWB0 (SKP1-like protein OS=Momordica charantia OX=3673 GN=LOC111014883 PE=3 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 7.0e-73
Identity = 141/155 (90.97%), Postives = 150/155 (96.77%), Query Frame = 0


Query: 1   MSSSKKITLKSSDGDSFEVDEAVALQSQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYC 60
           MSSSKKI LKSSDG+ FEVDEAVAL+SQTIRHMIEDDCADNGIPLPNV+SKILAKVIEYC
Sbjct: 1   MSSSKKIILKSSDGEPFEVDEAVALESQTIRHMIEDDCADNGIPLPNVSSKILAKVIEYC 60

Query: 61  HKHVDASSADPRPSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTVADMI 120
            KHVDAS+++PR SE+DLKAWDRDFVNVDQATLFDLILAAN+LNIK+LLDLTCQTVADMI
Sbjct: 61  RKHVDASNSEPRASEEDLKAWDRDFVNVDQATLFDLILAANYLNIKNLLDLTCQTVADMI 120

Query: 121 KGKDPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGK PEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of HG10002907 vs. ExPASy TrEMBL
Match: A0A1S3BJV5 (SKP1-like protein OS=Cucumis melo OX=3656 GN=LOC103490674 PE=3 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 7.7e-72
Identity = 142/155 (91.61%), Postives = 145/155 (93.55%), Query Frame = 0


Query: 1   MSSSKKITLKSSDGDSFEVDEAVALQSQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYC 60
           MSSSKKITLKSSDGD FEVD AVALQSQTIRHMIED CADNGIPLPNV SKILAKVIEYC
Sbjct: 1   MSSSKKITLKSSDGDYFEVDGAVALQSQTIRHMIEDSCADNGIPLPNVNSKILAKVIEYC 60

Query: 61  HKHVDASSADPRPSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTVADMI 120
            KHV+ASS DP PS DDLK WDRDFVNVDQATLFDLILAAN+L+IKSLLDLTCQTVADMI
Sbjct: 61  RKHVNASSLDPAPSVDDLKTWDRDFVNVDQATLFDLILAANYLDIKSLLDLTCQTVADMI 120

Query: 121 KGKDPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGK PEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of HG10002907 vs. ExPASy TrEMBL
Match: A0A3Q7K7M8 (SKP1-like protein OS=Cicer arietinum OX=3827 GN=LOC101511190 PE=3 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.3e-71
Identity = 138/155 (89.03%), Postives = 150/155 (96.77%), Query Frame = 0


Query: 1   MSSSKKITLKSSDGDSFEVDEAVALQSQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYC 60
           MSS+KKITLKSSDG++FEVDEAVAL+SQTI+HMIEDDCAD+GIPLPNVTSKILAKVIEYC
Sbjct: 1   MSSTKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADSGIPLPNVTSKILAKVIEYC 60

Query: 61  HKHVDASSADPRPSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTVADMI 120
            KHV+A+S+D +P+EDDLKAWD DFV VDQATLFDLILAAN+LNIKSLLDLTCQTVADMI
Sbjct: 61  KKHVEAASSDDKPTEDDLKAWDADFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKDPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGK PEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of HG10002907 vs. TAIR 10
Match: AT1G75950.1 (S phase kinase-associated protein 1 )

HSP 1 Score: 249.6 bits (636), Expect = 1.6e-66
Identity = 124/159 (77.99%), Postives = 141/159 (88.68%), Query Frame = 0


Query: 3   SSKKITLKSSDGDSFEVDEAVALQSQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCHK 62
           S+KKI LKSSDG+SFEV+EAVAL+SQTI HM+EDDC DNG+PLPNVTSKILAKVIEYC +
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 63  HVDASSADPR------PSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTV 122
           HV+A+++          S+DDLKAWD DF+ +DQATLF+LILAAN+LNIK+LLDLTCQTV
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query: 123 ADMIKGKDPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           ADMIKGK PEEIR TFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of HG10002907 vs. TAIR 10
Match: AT5G42190.1 (E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein )

HSP 1 Score: 246.1 bits (627), Expect = 1.8e-65
Identity = 126/171 (73.68%), Postives = 143/171 (83.63%), Query Frame = 0


Query: 1   MSSSKKITLKSSDGDSFEVDEAVALQSQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYC 60
           MS+ +KITLKSSDG++FE+DEAVAL+SQTI+HMIEDDC DNGIPLPNVTSKIL+KVIEYC
Sbjct: 1   MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query: 61  HKHVDA-----SSADPR-----------PSEDDLKAWDRDFVNVDQATLFDLILAANFLN 120
            +HV+A     ++AD              S++DLK WD +F+ VDQ TLFDLILAAN+LN
Sbjct: 61  KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLN 120

Query: 121 IKSLLDLTCQTVADMIKGKDPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           IK LLDLTCQTVADMIKGK PEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of HG10002907 vs. TAIR 10
Match: AT4G34210.1 (SKP1-like 11 )

HSP 1 Score: 217.2 bits (552), Expect = 9.0e-57
Identity = 112/153 (73.20%), Postives = 128/153 (83.66%), Query Frame = 0


Query: 3   SSKKITLKSSDGDSFEVDEAVALQSQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCHK 62
           SSK I L SSDG SFEV+EAVA+QSQTI HM+EDDC  +GIPL NV SKIL KVIEYC K
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  HVDASSADPRPSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTVADMIKG 122
           H     A+P  SE+DL  WD  F++++Q+T+F+LILAAN+LNIKSLLDLTCQTVADMIKG
Sbjct: 62  H-HVDEANP-ISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKG 121

Query: 123 KDPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           K PEEIR TFNI+NDFTPEEEE VR+ENQWAFE
Sbjct: 122 KTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]

BLAST of HG10002907 vs. TAIR 10
Match: AT4G34470.1 (SKP1-like 12 )

HSP 1 Score: 215.7 bits (548), Expect = 2.6e-56
Identity = 113/154 (73.38%), Postives = 129/154 (83.77%), Query Frame = 0


Query: 3   SSKKITLKSSDGDSFEVDEAVALQSQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCHK 62
           SSK I L SSDG SFEV+EAVA+QSQTI HM+EDDC  +GIPL NV SKIL KVIEYC K
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  -HVDASSADPRPSEDDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQTVADMIK 122
            HVD   A+P  SE+DL  WD  F++++Q+T+F+LILAAN+LNIKSL DLTCQTVADMIK
Sbjct: 62  YHVD--EANP-ISEEDLNKWDEKFMDLEQSTIFELILAANYLNIKSLFDLTCQTVADMIK 121

Query: 123 GKDPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           GK PEEIR TFNI+NDFTPEEEE VR+ENQWAFE
Sbjct: 122 GKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]

BLAST of HG10002907 vs. TAIR 10
Match: AT1G20140.1 (SKP1-like 4 )

HSP 1 Score: 213.0 bits (541), Expect = 1.7e-55
Identity = 107/160 (66.88%), Postives = 128/160 (80.00%), Query Frame = 0


Query: 3   SSKKITLKSSDGDSFEVDEAVALQSQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYCHK 62
           + K I LKSSDG+SFE++EAVA++SQTI+HMIEDDCADNGIPLPNVT  ILAKVIEYC K
Sbjct: 4   TKKMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKK 63

Query: 63  HVDASSADPRPSE-------DDLKAWDRDFVNVDQATLFDLILAANFLNIKSLLDLTCQT 122
           HV+A++      +       D+LK WD +FV VDQ TLFDLILAAN+LNI  LLDLTC+ 
Sbjct: 64  HVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKA 123

Query: 123 VADMIKGKDPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           VAD ++GK PE++R  FNIKND+TPEEE EVR EN+WAFE
Sbjct: 124 VADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163

The following BLAST results are available for this feature:

BLAST of HG10002907 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022965297.1	4.8e-76	94.84	SKP1-like protein 1A [Cucurbita maxima] >KAG6577790.1 SKP1-like protein 1A, part...	[more]
XP_038903121.1	6.2e-76	96.13	SKP1-like protein 1A [Benincasa hispida]	[more]
XP_022923340.1	1.4e-75	94.19	SKP1-like protein 1A [Cucurbita moschata]	[more]
XP_023553541.1	6.9e-75	94.19	SKP1-like protein 1A [Cucurbita pepo subsp. pepo]	[more]
XP_022145436.1	1.4e-72	90.97	SKP1-like protein 1A [Momordica charantia]	[more]

BLAST of HG10002907 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6PL11	1.8e-65	77.11	SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1	[more]
Q39255	2.3e-65	77.99	SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1	[more]
Q9FHW7	2.6e-64	73.68	SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1	[more]
Q651E8	2.7e-58	72.73	SKP1-like protein 20 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP20 PE=1 SV=1	[more]
O49484	1.3e-55	73.20	SKP1-like protein 11 OS=Arabidopsis thaliana OX=3702 GN=ASK11 PE=1 SV=1	[more]

BLAST of HG10002907 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HJY3	2.3e-76	94.84	SKP1-like protein OS=Cucurbita maxima OX=3661 GN=LOC111465205 PE=3 SV=1	[more]
A0A6J1EBI5	6.7e-76	94.19	SKP1-like protein OS=Cucurbita moschata OX=3662 GN=LOC111431062 PE=3 SV=1	[more]
A0A6J1CWB0	7.0e-73	90.97	SKP1-like protein OS=Momordica charantia OX=3673 GN=LOC111014883 PE=3 SV=1	[more]
A0A1S3BJV5	7.7e-72	91.61	SKP1-like protein OS=Cucumis melo OX=3656 GN=LOC103490674 PE=3 SV=1	[more]
A0A3Q7K7M8	1.3e-71	89.03	SKP1-like protein OS=Cicer arietinum OX=3827 GN=LOC101511190 PE=3 SV=1	[more]

BLAST of HG10002907 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75950.1	1.6e-66	77.99	S phase kinase-associated protein 1	[more]
AT5G42190.1	1.8e-65	73.68	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein	[more]
AT4G34210.1	9.0e-57	73.20	SKP1-like 11	[more]
AT4G34470.1	2.6e-56	73.38	SKP1-like 12	[more]
AT1G20140.1	1.7e-55	66.88	SKP1-like 4	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001232	S-phase kinase-associated protein 1-like	SMART	SM00512	skp1_3	coord: 4..105 e-value: 2.2E-54 score: 196.7
IPR011333	SKP1/BTB/POZ domain superfamily	GENE3D	3.30.710.10	Potassium Channel Kv1.1; Chain A	coord: 1..155 e-value: 2.7E-75 score: 254.0
IPR011333	SKP1/BTB/POZ domain superfamily	SUPERFAMILY	54695	POZ domain	coord: 5..65
IPR016897	S-phase kinase-associated protein 1	PIRSF	PIRSF028729	SCF_Skp	coord: 1..155 e-value: 2.5E-68 score: 226.8
IPR016897	S-phase kinase-associated protein 1	PANTHER	PTHR11165	SKP1	coord: 1..155
IPR016072	SKP1 component, dimerisation	PFAM	PF01466	Skp1	coord: 106..153 e-value: 1.3E-29 score: 102.0
IPR016073	SKP1 component, POZ domain	PFAM	PF03931	Skp1_POZ	coord: 5..64 e-value: 7.3E-31 score: 106.1
None	No IPR available	PANTHER	PTHR11165:SF145	PUTATIVE-RELATED	coord: 1..155
None	No IPR available	CDD	cd18322	BTB_POZ_SKP1	coord: 6..120 e-value: 1.94131E-61 score: 183.562
IPR036296	SKP1-like, dimerisation domain superfamily	SUPERFAMILY	81382	Skp1 dimerisation domain-like	coord: 78..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10002907.1	HG10002907.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0097602	cullin family protein binding