HG10002860 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10002860
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr11: 14802150 .. 14802476 (+)
RNA-Seq ExpressionHG10002860
SyntenyHG10002860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCCTATTACGTATGAGAGGATTAAGAGGCGGCGGCGGGGCTCCTGCAGAGGCTTCCGGCTGAGCTCCAGAAGACTGTCCGTGTGGAAGCTGCGGGCGAAGTTGGGGTGGTTGTTGCGGCGGATCTTAAATTCCTGGCGACGTTCCATTGTTGAGATTAAGAAGGGAGGAAGATCAAAGGGTTGTTCTTCGGCGGCTGCGCAACCGAGGCTCAGCTCCTTCCGCCGCTCCAACTCTTTCTACGCCGAAGCCATTGCCGATTGCTTGGATTTCATCAAGACCTCCTCCTCCTCCTCCTCTACTTCCACTTCCACTTCCATCTGA

mRNA sequence

ATGGATCCTATTACGTATGAGAGGATTAAGAGGCGGCGGCGGGGCTCCTGCAGAGGCTTCCGGCTGAGCTCCAGAAGACTGTCCGTGTGGAAGCTGCGGGCGAAGTTGGGGTGGTTGTTGCGGCGGATCTTAAATTCCTGGCGACGTTCCATTGTTGAGATTAAGAAGGGAGGAAGATCAAAGGGTTGTTCTTCGGCGGCTGCGCAACCGAGGCTCAGCTCCTTCCGCCGCTCCAACTCTTTCTACGCCGAAGCCATTGCCGATTGCTTGGATTTCATCAAGACCTCCTCCTCCTCCTCCTCTACTTCCACTTCCACTTCCATCTGA

Coding sequence (CDS)

ATGGATCCTATTACGTATGAGAGGATTAAGAGGCGGCGGCGGGGCTCCTGCAGAGGCTTCCGGCTGAGCTCCAGAAGACTGTCCGTGTGGAAGCTGCGGGCGAAGTTGGGGTGGTTGTTGCGGCGGATCTTAAATTCCTGGCGACGTTCCATTGTTGAGATTAAGAAGGGAGGAAGATCAAAGGGTTGTTCTTCGGCGGCTGCGCAACCGAGGCTCAGCTCCTTCCGCCGCTCCAACTCTTTCTACGCCGAAGCCATTGCCGATTGCTTGGATTTCATCAAGACCTCCTCCTCCTCCTCCTCTACTTCCACTTCCACTTCCATCTGA

Protein sequence

MDPITYERIKRRRRGSCRGFRLSSRRLSVWKLRAKLGWLLRRILNSWRRSIVEIKKGGRSKGCSSAAAQPRLSSFRRSNSFYAEAIADCLDFIKTSSSSSSTSTSTSI
Homology
BLAST of HG10002860 vs. NCBI nr
Match: KAA0052904.1 (hypothetical protein E6C27_scaffold344G00100 [Cucumis melo var. makuwa] >TYK11358.1 hypothetical protein E5676_scaffold139G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 141.0 bits (354), Expect = 6.2e-30
Identity = 85/108 (78.70%), Postives = 92/108 (85.19%), Query Frame = 0

Query: 1   MDPITYERIKRRRRGSCRGFRLSSRRLSVWKLRAKLGWLLRRILNSWRRSIVEIKKGGR- 60
           MDPITYERI+RR R SCRGFRL+SRRLSV KL++K GWLL RILN WRRSIV+IKK GR 
Sbjct: 1   MDPITYERIRRRPRRSCRGFRLTSRRLSVSKLQSKFGWLL-RILNWWRRSIVDIKKRGRS 60

Query: 61  SKGCSSAAAQ-PRLSSFRRSNSFYAEAIADCLDFIKTSSSSSSTSTST 107
           SKG S++ AQ  RL SFRRSNSFYAEAIADCLDFIKTSSSS ST  ST
Sbjct: 61  SKGSSNSGAQATRLRSFRRSNSFYAEAIADCLDFIKTSSSSFSTPPST 107

BLAST of HG10002860 vs. NCBI nr
Match: KAE8637405.1 (hypothetical protein CSA_023382 [Cucumis sativus] >KGN55589.1 hypothetical protein Csa_011775 [Cucumis sativus])

HSP 1 Score: 138.7 bits (348), Expect = 3.1e-29
Identity = 81/103 (78.64%), Postives = 89/103 (86.41%), Query Frame = 0

Query: 1   MDPITYERIKRRRRGSCRGFRLSSRRLSVWKLRAKLGWLLRRILNSWRRSIVEIKKGG-R 60
           MDPITYERI RR+R SCRGFRL+SRRLSV KLR+K GWLL RILN WRRSIVEIKK G  
Sbjct: 1   MDPITYERITRRQRRSCRGFRLTSRRLSVSKLRSKFGWLL-RILNRWRRSIVEIKKSGTS 60

Query: 61  SKGCSSAAAQ-PRLSSFRRSNSFYAEAIADCLDFIKTSSSSSS 102
           SKG S++AAQ  +L SFRRSNSFYAEAIADCLDFIKT+SS S+
Sbjct: 61  SKGSSNSAAQAAKLRSFRRSNSFYAEAIADCLDFIKTTSSFST 102

BLAST of HG10002860 vs. NCBI nr
Match: KAG6596289.1 (hypothetical protein SDJN03_09469, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110.2 bits (274), Expect = 1.2e-20
Identity = 72/122 (59.02%), Postives = 84/122 (68.85%), Query Frame = 0

Query: 1   MDPITYERIKRRRRG--SCRGFRLSSRRLSVWKLRAKLGWLLRRILNSWRRS------IV 60
           M+PITY+RI+RR  G   CRGF L SRR SV KLRAK  WLL RILN WRRS      I 
Sbjct: 76  MEPITYQRIRRRSHGFARCRGFHLHSRRFSVSKLRAKFDWLL-RILNRWRRSYSWSIKIN 135

Query: 61  EIKKGGRSKGCSSAAA---------QPRLSSFRRSNSFYAEAIADCLDFIKTSSSSSSTS 106
           + ++GGRSK  ++A+A         + RL SFRRSNSFYAEAIADCLDFIK SS SS  +
Sbjct: 136 KARRGGRSKASATASAEFPRCVDRGECRLRSFRRSNSFYAEAIADCLDFIKRSSVSSDRA 195

BLAST of HG10002860 vs. NCBI nr
Match: KAG7027838.1 (hypothetical protein SDJN02_09015, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110.2 bits (274), Expect = 1.2e-20
Identity = 72/122 (59.02%), Postives = 84/122 (68.85%), Query Frame = 0

Query: 1   MDPITYERIKRRRRG--SCRGFRLSSRRLSVWKLRAKLGWLLRRILNSWRRS------IV 60
           M+PITY+RI+RR  G   CRGF L SRR SV KLRAK  WLL RILN WRRS      I 
Sbjct: 1   MEPITYQRIRRRSHGFARCRGFHLHSRRFSVSKLRAKFDWLL-RILNRWRRSYSWSIKIN 60

Query: 61  EIKKGGRSKGCSSAAA---------QPRLSSFRRSNSFYAEAIADCLDFIKTSSSSSSTS 106
           + ++GGRSK  ++A+A         + RL SFRRSNSFYAEAIADCLDFIK SS SS  +
Sbjct: 61  KARRGGRSKASATASAEFPRCVDRGECRLRSFRRSNSFYAEAIADCLDFIKRSSVSSDRA 120

BLAST of HG10002860 vs. NCBI nr
Match: XP_022158286.1 (uncharacterized protein LOC111024807 [Momordica charantia])

HSP 1 Score: 98.2 bits (243), Expect = 4.6e-17
Identity = 62/104 (59.62%), Postives = 76/104 (73.08%), Query Frame = 0

Query: 1   MDPITYERI----KRRRRGSCRGFRLSSRRLSVWKLRAKLGWLLRRILNSWRRSIVEIKK 60
           M+PI+YERI     RRR  S RGFRL+SRR SV +LRAK   LL RILN WRRSI ++++
Sbjct: 78  MEPISYERIIGKGSRRRSQSARGFRLNSRRFSVSRLRAKFMCLL-RILNKWRRSIKKMRR 137

Query: 61  GGRSKGCSSAAAQPRLSSFRRSNSFYAEAIADCLDFIKTSSSSS 101
             +++         RL SFRRSNSFYAEA+ADCLDFIKT++SSS
Sbjct: 138 -SKAEVAEFPWCTDRLRSFRRSNSFYAEAMADCLDFIKTNTSSS 179

BLAST of HG10002860 vs. ExPASy TrEMBL
Match: A0A5A7UC85 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00100 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 3.0e-30
Identity = 85/108 (78.70%), Postives = 92/108 (85.19%), Query Frame = 0

Query: 1   MDPITYERIKRRRRGSCRGFRLSSRRLSVWKLRAKLGWLLRRILNSWRRSIVEIKKGGR- 60
           MDPITYERI+RR R SCRGFRL+SRRLSV KL++K GWLL RILN WRRSIV+IKK GR 
Sbjct: 1   MDPITYERIRRRPRRSCRGFRLTSRRLSVSKLQSKFGWLL-RILNWWRRSIVDIKKRGRS 60

Query: 61  SKGCSSAAAQ-PRLSSFRRSNSFYAEAIADCLDFIKTSSSSSSTSTST 107
           SKG S++ AQ  RL SFRRSNSFYAEAIADCLDFIKTSSSS ST  ST
Sbjct: 61  SKGSSNSGAQATRLRSFRRSNSFYAEAIADCLDFIKTSSSSFSTPPST 107

BLAST of HG10002860 vs. ExPASy TrEMBL
Match: A0A0A0L3I7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G000130 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.5e-29
Identity = 81/103 (78.64%), Postives = 89/103 (86.41%), Query Frame = 0

Query: 1   MDPITYERIKRRRRGSCRGFRLSSRRLSVWKLRAKLGWLLRRILNSWRRSIVEIKKGG-R 60
           MDPITYERI RR+R SCRGFRL+SRRLSV KLR+K GWLL RILN WRRSIVEIKK G  
Sbjct: 1   MDPITYERITRRQRRSCRGFRLTSRRLSVSKLRSKFGWLL-RILNRWRRSIVEIKKSGTS 60

Query: 61  SKGCSSAAAQ-PRLSSFRRSNSFYAEAIADCLDFIKTSSSSSS 102
           SKG S++AAQ  +L SFRRSNSFYAEAIADCLDFIKT+SS S+
Sbjct: 61  SKGSSNSAAQAAKLRSFRRSNSFYAEAIADCLDFIKTTSSFST 102

BLAST of HG10002860 vs. ExPASy TrEMBL
Match: A0A6J1E0I4 (uncharacterized protein LOC111024807 OS=Momordica charantia OX=3673 GN=LOC111024807 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.2e-17
Identity = 62/104 (59.62%), Postives = 76/104 (73.08%), Query Frame = 0

Query: 1   MDPITYERI----KRRRRGSCRGFRLSSRRLSVWKLRAKLGWLLRRILNSWRRSIVEIKK 60
           M+PI+YERI     RRR  S RGFRL+SRR SV +LRAK   LL RILN WRRSI ++++
Sbjct: 78  MEPISYERIIGKGSRRRSQSARGFRLNSRRFSVSRLRAKFMCLL-RILNKWRRSIKKMRR 137

Query: 61  GGRSKGCSSAAAQPRLSSFRRSNSFYAEAIADCLDFIKTSSSSS 101
             +++         RL SFRRSNSFYAEA+ADCLDFIKT++SSS
Sbjct: 138 -SKAEVAEFPWCTDRLRSFRRSNSFYAEAMADCLDFIKTNTSSS 179

BLAST of HG10002860 vs. ExPASy TrEMBL
Match: A0A165XTS4 (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014121 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.5e-10
Identity = 52/114 (45.61%), Postives = 68/114 (59.65%), Query Frame = 0

Query: 4   ITYERIKRRRR---GSCRGFRLSSRRLSVWKLRAKLGWLLRRILNSWR------RSIVEI 63
           + Y R++  RR   G CRGFRL++RR SV++LRAK  +L + +   WR      R+I   
Sbjct: 5   LKYNRVRDHRRSFHGPCRGFRLNARRFSVYRLRAKFYYLFKILSGRWRSWYKHARNICHS 64

Query: 64  KKGGRSKGCSSAAAQP----RLSSFRRSNSFYAEAIADCLDFIKTSSSSSSTST 105
            +   S+   S  A P    RL SF RSNSFY+EAIADCL+FIK SS S   +T
Sbjct: 65  HRKKESREFVSRNAYPRVQNRLRSFGRSNSFYSEAIADCLEFIKRSSVSVDENT 118

BLAST of HG10002860 vs. ExPASy TrEMBL
Match: A0A4S4EGV4 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_019365 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 5.8e-10
Identity = 50/109 (45.87%), Postives = 67/109 (61.47%), Query Frame = 0

Query: 1   MDPITYERIKRRRRGSCRG----FRLSSRRLSVWKLRAKLGWLLRRILNSWRRS----IV 60
           M  ++Y ++ RR   SCRG    FRL+ R+LSV++LRAK  +L  R+ + WR S    + 
Sbjct: 1   MGHMSYNKVSRRSLSSCRGRRRCFRLNPRKLSVYRLRAKFLYLF-RLFSRWRSSCGHALD 60

Query: 61  EIKKG--GRSKGCSSAAAQPRLSSFRRSNSFYAEAIADCLDFIKTSSSS 100
            IKKG    S  CSS+     + +  RSNSFY+EAIADCL+FIK  S S
Sbjct: 61  SIKKGITRSSSSCSSSRRNMVIPNIDRSNSFYSEAIADCLEFIKRGSIS 108

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0052904.16.2e-3078.70hypothetical protein E6C27_scaffold344G00100 [Cucumis melo var. makuwa] >TYK1135... [more]
KAE8637405.13.1e-2978.64hypothetical protein CSA_023382 [Cucumis sativus] >KGN55589.1 hypothetical prote... [more]
KAG6596289.11.2e-2059.02hypothetical protein SDJN03_09469, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7027838.11.2e-2059.02hypothetical protein SDJN02_09015, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022158286.14.6e-1759.62uncharacterized protein LOC111024807 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UC853.0e-3078.70Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0L3I71.5e-2978.64Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G000130 PE=4 SV=1[more]
A0A6J1E0I42.2e-1759.62uncharacterized protein LOC111024807 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A165XTS44.5e-1045.61Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014121 ... [more]
A0A4S4EGV45.8e-1045.87Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0193... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34996OS06G0327400 PROTEINcoord: 2..53
NoneNo IPR availablePANTHERPTHR34996:SF3OS06G0327400 PROTEINcoord: 62..104
coord: 2..53
NoneNo IPR availablePANTHERPTHR34996OS06G0327400 PROTEINcoord: 62..104

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10002860.1HG10002860.1mRNA