HG10002750 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10002750
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr11: 11417065 .. 11418738 (+)
RNA-Seq Expression	HG10002750
Synteny	HG10002750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGCGTAACAGGGAGCGAACTGGCCGGTTTCGCAGTGGGGGCTCTGCTCGTTTGCGCCACCATTTCTGCCCCTAGAATCGACGCTTTCATCTCTTCTTCTCAGCGCAGGTTTTGTTCTGTTCTTCCCATCCTCATTTACATGTTTTTCATTTTCTGGGTTCTTCTTTAATTCCCAATATTTGGTAGGTTCTGTGTGATAATCTGATGGAGGAAGGCGAATTGAACAGAACCCATTACTTTAATTCGTTTGATTTAGGAGGAAACTTTGTGAGTCTGTCTGTTGGCTACTGGTTTAGGGATTGTTTAGGCATTTGTGGATAAGAACCCCAAATTGGTTTCCACTTTATGATTTATGCTTTTTGTTTTGCATCTACTACTTATACATTGAAATTTTGCATGTATCAATAGGGAAAAGTAGGATTTCCAAAGGTAGAAAAAGAGAACTCAAACTATGGATTGGGATTGATGTTGTTCATTTCGATAATTGCATTTTGAATGGATGGATTGTGTATCCTTTAGATTTTATAGGAAGGTGACCCTATACTAGTATTCATTAGAGTCTCCTCCTTTCTTTCAACCTCAAACCTTCTATGGCACTCATTCATCCCTTCCCTTGGAGAAATTATACTTGAGGGGCTACAACAATGCTGACTTGTGATTGTACATTGATGTATATGAAAGATATTCAAAAACTGTATTTTGAACTTCAATCGAATGTTGAAAACACATTAAACGAATACTAGAAGGTGGGTTATTCGCCAACATGAGTATAGTCCAACGGTAATTGACATATATTGCTTCCCTTAAGGTCATACTCATATTCCACATTTGTTGTAAATAGGATATTCACTAGATTATGTTTTCTTCCTTTATACGCGGTTTAAGCATAAACTTCCTAAAATATTGATACCATTTTGGTCCATGTACTCTAGGTTTCATTCCATTTTAATTTTTATACTTTCGAATGTCTCAATTAAATTTAGTCTATGTACTTCCTTCCCATAACTCTTAAGTTTTGTCCTTTTGAAGTTAATGTTTATCAAATTTGATTAAATAATAATAATAATAATTTTCATTCAAGAAAAAACACTATGTAAATATGGTTCCAAAGTTTCAAAACTTATAGAAGGAAATTTAATAGAGTCTAAATGCGTTTCTTTCCCTAGAAAAATCAACAAAAACTATAGTAATAGGAACTGTTTTAAAGATTGTCATAATGTCGATTGGTGTCTAGCATCAAGTATGTACTATCAACTTTGAGGCTTGAGGTTCGATCTCCCACTTGCATATTGTCAAAAAAGGAACTGTTTTAAAGATTCATTGAAAGCACATGGATTAAAATTGCACATTTAAAACTTCGGTGACTGAAATAAAACAAGAAATAGTGCAAGAGATGTGGTTGATTATGATCAATGTGATTGATTATGTTGTCTATTTGGACAGATCCTTAGGCATGTGCAAGAGATGTGGTGACTTAAGGATGATAGCATGTTCAAAATGTAAAGGAGTTGGATCAACCAAATCAGGTGGACTGTTTGGTGTTAACATTCTTGCTGACTTTTACGAATCATTCGGCAAAGACGAATCAAATGCACCTTCTATCCAGTGCACGAGGTGCAACGCCAAAGGTCGCTTCCAATGTCCAGACTGCTGCTCTCAGATGTCATGA

mRNA sequence

ATGGAAAGCGTAACAGGGAGCGAACTGGCCGGTTTCGCAGTGGGGGCTCTGCTCGTTTGCGCCACCATTTCTGCCCCTAGAATCGACGCTTTCATCTCTTCTTCTCAGCGCAGATCCTTAGGCATGTGCAAGAGATGTGGTGACTTAAGGATGATAGCATGTTCAAAATGTAAAGGAGTTGGATCAACCAAATCAGGTGGACTGTTTGGTGTTAACATTCTTGCTGACTTTTACGAATCATTCGGCAAAGACGAATCAAATGCACCTTCTATCCAGTGCACGAGGTGCAACGCCAAAGGTCGCTTCCAATGTCCAGACTGCTGCTCTCAGATGTCATGA

Coding sequence (CDS)

ATGGAAAGCGTAACAGGGAGCGAACTGGCCGGTTTCGCAGTGGGGGCTCTGCTCGTTTGCGCCACCATTTCTGCCCCTAGAATCGACGCTTTCATCTCTTCTTCTCAGCGCAGATCCTTAGGCATGTGCAAGAGATGTGGTGACTTAAGGATGATAGCATGTTCAAAATGTAAAGGAGTTGGATCAACCAAATCAGGTGGACTGTTTGGTGTTAACATTCTTGCTGACTTTTACGAATCATTCGGCAAAGACGAATCAAATGCACCTTCTATCCAGTGCACGAGGTGCAACGCCAAAGGTCGCTTCCAATGTCCAGACTGCTGCTCTCAGATGTCATGA

Protein sequence

MESVTGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGVGSTKSGGLFGVNILADFYESFGKDESNAPSIQCTRCNAKGRFQCPDCCSQMS

Homology

[Close]

BLAST of HG10002750 vs. NCBI nr
Match: XP_038901067.1 (uncharacterized protein LOC120088085 [Benincasa hispida])

HSP 1 Score: 219.5 bits (558), Expect = 1.4e-53
Identity = 106/112 (94.64%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MESVTGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 60
           MES+TGSELAGFAVGALLVCA+ISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV
Sbjct: 1   MESITGSELAGFAVGALLVCASISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 60

Query: 61  GSTKSGGLFGVNILADFYESFGKDESNAPSIQCTRCNAKGRFQCPDCCSQMS 113
           GS KSGGLFGVNILA+FYESFGKDESNAPSI CTRCNAKGRFQCPDCCSQM+
Sbjct: 61  GSIKSGGLFGVNILAEFYESFGKDESNAPSIPCTRCNAKGRFQCPDCCSQMT 112

[Close]

BLAST of HG10002750 vs. NCBI nr
Match: XP_004137138.1 (uncharacterized protein LOC101207960 [Cucumis sativus] >KGN53782.1 hypothetical protein Csa_015216 [Cucumis sativus])

HSP 1 Score: 216.9 bits (551), Expect = 9.2e-53
Identity = 103/112 (91.96%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 1   MESVTGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 60
           MES+TGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV
Sbjct: 1   MESITGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 60

Query: 61  GSTKSGGLFGVNILADFYESFGKDESNAPSIQCTRCNAKGRFQCPDCCSQMS 113
           GSTKSGGLFG+NILADFYE+ GKDESN PSI CTRCNAKGRF+CPDCCSQ++
Sbjct: 61  GSTKSGGLFGINILADFYEALGKDESNVPSIPCTRCNAKGRFRCPDCCSQLT 112

[Close]

BLAST of HG10002750 vs. NCBI nr
Match: XP_022155031.1 (uncharacterized protein LOC111022174 [Momordica charantia])

HSP 1 Score: 207.2 bits (526), Expect = 7.3e-50
Identity = 99/110 (90.00%), Postives = 105/110 (95.45%), Query Frame = 0


Query: 1   MESVTGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 60
           ME+VT SE+AGFAVGALLVCATISAPRIDAFISSSQR SLGMCKRCGDLRMIACSKC+GV
Sbjct: 1   MENVTASEVAGFAVGALLVCATISAPRIDAFISSSQRSSLGMCKRCGDLRMIACSKCRGV 60

Query: 61  GSTKSGGLFGVNILADFYESFGKDESNAPSIQCTRCNAKGRFQCPDCCSQ 111
           GSTK+GGLFGVNILADFYESFG+DESN PSI C+RCNAKGRF CPDCCSQ
Sbjct: 61  GSTKAGGLFGVNILADFYESFGRDESNLPSIPCSRCNAKGRFSCPDCCSQ 110

[Close]

BLAST of HG10002750 vs. NCBI nr
Match: KAA0045498.1 (uncharacterized protein E6C27_scaffold1202G00430 [Cucumis melo var. makuwa] >TYJ96211.1 uncharacterized protein E5676_scaffold261G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 201.8 bits (512), Expect = 3.0e-48
Identity = 100/112 (89.29%), Postives = 104/112 (92.86%), Query Frame = 0


Query: 1   MESVTGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 60
           MES+TGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV
Sbjct: 20  MESITGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 79

Query: 61  GSTKSGGLFGVNILADFYESFGKDESNAPSIQCTRCNAKGRFQCPDCCSQMS 113
           GSTKSGGLFG+NILADFYES    ESN PSI C RCNAKGRFQCPDC SQ++
Sbjct: 80  GSTKSGGLFGINILADFYESL--SESNVPSIPCMRCNAKGRFQCPDCSSQLT 129

[Close]

BLAST of HG10002750 vs. NCBI nr
Match: XP_008464577.2 (PREDICTED: uncharacterized protein LOC103502417 [Cucumis melo])

HSP 1 Score: 201.8 bits (512), Expect = 3.0e-48
Identity = 100/112 (89.29%), Postives = 104/112 (92.86%), Query Frame = 0


Query: 1   MESVTGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 60
           MES+TGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV
Sbjct: 1   MESITGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 60

Query: 61  GSTKSGGLFGVNILADFYESFGKDESNAPSIQCTRCNAKGRFQCPDCCSQMS 113
           GSTKSGGLFG+NILADFYES    ESN PSI C RCNAKGRFQCPDC SQ++
Sbjct: 61  GSTKSGGLFGINILADFYESL--SESNVPSIPCMRCNAKGRFQCPDCSSQLT 110

[Close]

BLAST of HG10002750 vs. ExPASy TrEMBL
Match: A0A0A0KZH5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G127010 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 4.4e-53
Identity = 103/112 (91.96%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 1   MESVTGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 60
           MES+TGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV
Sbjct: 1   MESITGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 60

Query: 61  GSTKSGGLFGVNILADFYESFGKDESNAPSIQCTRCNAKGRFQCPDCCSQMS 113
           GSTKSGGLFG+NILADFYE+ GKDESN PSI CTRCNAKGRF+CPDCCSQ++
Sbjct: 61  GSTKSGGLFGINILADFYEALGKDESNVPSIPCTRCNAKGRFRCPDCCSQLT 112

[Close]

BLAST of HG10002750 vs. ExPASy TrEMBL
Match: A0A6J1DQH1 (uncharacterized protein LOC111022174 OS=Momordica charantia OX=3673 GN=LOC111022174 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 3.5e-50
Identity = 99/110 (90.00%), Postives = 105/110 (95.45%), Query Frame = 0


Query: 1   MESVTGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 60
           ME+VT SE+AGFAVGALLVCATISAPRIDAFISSSQR SLGMCKRCGDLRMIACSKC+GV
Sbjct: 1   MENVTASEVAGFAVGALLVCATISAPRIDAFISSSQRSSLGMCKRCGDLRMIACSKCRGV 60

Query: 61  GSTKSGGLFGVNILADFYESFGKDESNAPSIQCTRCNAKGRFQCPDCCSQ 111
           GSTK+GGLFGVNILADFYESFG+DESN PSI C+RCNAKGRF CPDCCSQ
Sbjct: 61  GSTKAGGLFGVNILADFYESFGRDESNLPSIPCSRCNAKGRFSCPDCCSQ 110

[Close]

BLAST of HG10002750 vs. ExPASy TrEMBL
Match: A0A5A7TRM8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold261G00510 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.5e-48
Identity = 100/112 (89.29%), Postives = 104/112 (92.86%), Query Frame = 0


Query: 1   MESVTGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 60
           MES+TGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV
Sbjct: 20  MESITGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 79

Query: 61  GSTKSGGLFGVNILADFYESFGKDESNAPSIQCTRCNAKGRFQCPDCCSQMS 113
           GSTKSGGLFG+NILADFYES    ESN PSI C RCNAKGRFQCPDC SQ++
Sbjct: 80  GSTKSGGLFGINILADFYESL--SESNVPSIPCMRCNAKGRFQCPDCSSQLT 129

[Close]

BLAST of HG10002750 vs. ExPASy TrEMBL
Match: A0A1S3CMA9 (uncharacterized protein LOC103502417 OS=Cucumis melo OX=3656 GN=LOC103502417 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.5e-48
Identity = 100/112 (89.29%), Postives = 104/112 (92.86%), Query Frame = 0


Query: 1   MESVTGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 60
           MES+TGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV
Sbjct: 1   MESITGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 60

Query: 61  GSTKSGGLFGVNILADFYESFGKDESNAPSIQCTRCNAKGRFQCPDCCSQMS 113
           GSTKSGGLFG+NILADFYES    ESN PSI C RCNAKGRFQCPDC SQ++
Sbjct: 61  GSTKSGGLFGINILADFYESL--SESNVPSIPCMRCNAKGRFQCPDCSSQLT 110

[Close]

BLAST of HG10002750 vs. ExPASy TrEMBL
Match: A0A6J1J083 (uncharacterized protein LOC111480031 OS=Cucurbita maxima OX=3661 GN=LOC111480031 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 6.2e-47
Identity = 98/111 (88.29%), Postives = 101/111 (90.99%), Query Frame = 0


Query: 1   MESVTGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 60
           ME+VT SELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV
Sbjct: 10  MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 69

Query: 61  GSTKSGGLFGVNILADFYESFGKDESNAPSIQCTRCNAKGRFQCPDCCSQM 112
           GSTKSGG+F     A+ YESFGKDE NAPSI CTRCNAKGRF CPDCCSQM
Sbjct: 70  GSTKSGGVF-----AELYESFGKDEPNAPSIPCTRCNAKGRFPCPDCCSQM 115

[Close]

BLAST of HG10002750 vs. TAIR 10
Match: AT5G15802.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35 Blast hits to 35 proteins in 15 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 125.2 bits (313), Expect = 3.4e-29
Identity = 59/107 (55.14%), Postives = 78/107 (72.90%), Query Frame = 0


Query: 1   MESVTGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 60
           M+S+T +E+AG AVGALL+ ATI+AP++DAFI++SQRRSLGMC++CGDL+ +AC +CKG 
Sbjct: 1   MQSLTSNEVAGLAVGALLLGATIAAPKVDAFIAASQRRSLGMCRKCGDLKNVACGRCKGT 60

Query: 61  GSTKSGGLFGVNILADFYESFGKDESNAPSIQCTRCNAKGRFQCPDC 108
           G+ KSGG FG +           D SN  S+ C  C AKG F CP+C
Sbjct: 61  GTIKSGGFFGFS-----------DSSNTRSVACDNCQAKGCFPCPEC 96

The following BLAST results are available for this feature:

BLAST of HG10002750 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038901067.1	1.4e-53	94.64	uncharacterized protein LOC120088085 [Benincasa hispida]	[more]
XP_004137138.1	9.2e-53	91.96	uncharacterized protein LOC101207960 [Cucumis sativus] >KGN53782.1 hypothetical ...	[more]
XP_022155031.1	7.3e-50	90.00	uncharacterized protein LOC111022174 [Momordica charantia]	[more]
KAA0045498.1	3.0e-48	89.29	uncharacterized protein E6C27_scaffold1202G00430 [Cucumis melo var. makuwa] >TYJ...	[more]
XP_008464577.2	3.0e-48	89.29	PREDICTED: uncharacterized protein LOC103502417 [Cucumis melo]	[more]

BLAST of HG10002750 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10002750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZH5	4.4e-53	91.96	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G127010 PE=4 SV=1	[more]
A0A6J1DQH1	3.5e-50	90.00	uncharacterized protein LOC111022174 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A5A7TRM8	1.5e-48	89.29	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CMA9	1.5e-48	89.29	uncharacterized protein LOC103502417 OS=Cucumis melo OX=3656 GN=LOC103502417 PE=...	[more]
A0A6J1J083	6.2e-47	88.29	uncharacterized protein LOC111480031 OS=Cucurbita maxima OX=3661 GN=LOC111480031...	[more]

BLAST of HG10002750 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G15802.1	3.4e-29	55.14	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37760:SF1	CHAPERONE	coord: 1..110
None	No IPR available	PANTHER	PTHR37760	CHAPERONE	coord: 1..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10002750.1	HG10002750.1	mRNA