HG10002729 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10002729
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	DNA ligase
Location	Chr11: 10879713 .. 10885122 (-)
RNA-Seq Expression	HG10002729
Synteny	HG10002729

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAAAACTGTTGTTCATGCTCTGGCCCAGGCTGTTTTCATAAGTTCGTCTCTCAAGATTTACAAGGAAGGAATGGTGGAAAATTTAAAGGAGAAGCTTCAGGTTCCAGTTATATTTTTCTATAATGGCATTTTATCTCTTTTAAATGGTTATGCATTTTATTTTATGTATTTTTATAAGTGATTGACTTTATTTGATGTTGTCATGGTGAATTCTTGACTTTTGTTTTTTGCAGAACTTTTCAGCTACTGTACTAGATGCATACAATGTTCTTCCAAATTTTGTAAGTCACTGCTTGTGTGTTGTTAAGTTTGTTGTTGTGCTTTTCGTTTTGCAGCACGAATAAGGAAGAATAGGAAAAAGAGAGTGAACTTGTTAAGAACATGAACCGAAGAGGGGAAATACAGCTAAAAGCTCTGCATTGCTTATTCCTTTTTCTTATTTATTTATTTTGTATTTGGTAAGAGAGTAAGAATTTGTGTTGCTCATTCTTCTACTAAATAAGAATGAAATTTAATTTTTTAAAAAGAATCTACGATACTTCTCATGGAGGAAGGTAAGTGGAACACAGATTAGAAAGAGAATAATTGAATTAAGTAGATTAGATAAAAAACCCTGAGAGACATATATAGATGTGGTCTCTCCCCAAAGCTTCTTCTTGGGTCTTTCTTCTTCCTCCCCTTCTATTTTGCTAAATCCAAATAACCCATAAAATAGTCTCTTTTAGAAGGCCAGTGTAAAAGTTTCTTTTCATCTTCTCGCATGTTTGGTTTGGTTGGTGGTTTAATGTTCAATAAAATGAAAAAAAAAATCAAATTAACTAAGCGTACTTTAAACATAATAAATAAGCCCTACCCTCGCCCAACTCTCCTCTCTCTGCCCCCATTGTAGCCCCCAGCAACCCCTTGCATACCCATTTCTTAGGCCAGCCAACTGGCAGCCCACAACTCTCCCTCTCTTTTAATCTCTAAGGGCATGTTTGAGAGTGATTTTAAAAATAGTAATTTGAGCAAAAATGATTTGTTTGTAAGTGGTTTATTAAAAATAATATCGTACGATCATTTTCATGTTTGATTTTATACACTTTTAAACGCAGTTTTCATTCTATAAAAATTGATTTAGAATGATTAAACAAATTATTTTAAACATTCCCTAACCCTAGGTACTGTTTGAAGGTCAGTTGGAAGCCTCCATTTCCATTCTTCTCTTTCATACTATCTTCAGCCTCCTTACCTCTTCTTTTCTCTTACTGCCCCATGTTGACGTTCCTTCTCTTATCCCATTATTCTTTCTTTGAGACTCTCTCTCCAGTTGCACCGTGCCAATACCAACTGTCTTCTCTTATCCCTCTCTTCCATTTGATCTTTAGCATAATCTCTTGACTTGATGAACTCAAGGAATGCTCAAAGAGACTTTTATTAATACTGAATAATAATGAATCCCAAAAACAACAGTCAAGCCATATATATAGGCTGAGAAAACAAACTAAGGGGAAACAACAGGGCCCACTGGTAACTGACAGCCAAAATAAGGAAAAGGGCTGTAAAACCTTAGATAAAAAAGGTAGTTACATAGAACAAAAGGTAAACAAAGATTTACCCAATTTAAACAAGAAACATTCTAAAGAAATACAAGAAATGTCTCAAAGAAACACAAGAAACCCAAGATAAGATAAGCCCTGCATCAGGACAATGCAACTGTCTTCCATTCTTATTCTCGGACAATAAATGAGTCTGATTAATTTTCATACATTCTTTTTTTCCCAAACTCATAATTGGTTAATTTTTCATTTATGTTTTAGGAATTGTAGAATATCTGTAAATTTCTTTCTGTTTTTCTGTATTCTCGTTTCCATCAGTTCTCTTTTTCACATGTTTGTTAGCTGGTTTAATCAGCTATAAAATCCTTGCAAGTACGGTAATTATGAGTAAAAGGAGCAATTTCTTTTTTTCCCTTTCAACTCACAAATAATGACGCCATGTTGAAAAAAAAAAATAATGATGTGTTGTCATTGTGTGTCATTAGAGTTGATTTAAGTCAATTGCTTTCTTGTTCTTCAAAGCAGGATCTGATTGTTCCTTCTCTTATGGGCAAAGGGATTGAATTCTCATCATCGTCTTTATCAATGGTTCCAGGAATACCTATTAAGCCAATGCTCGCGAAGTACATTTATGGGCCAGTTATAACATTCATCATTTTTATCAATAATTTTTTTTTTCTATATTTGTAATTTGGGTCATTGTTTGTTATTGGTTCCTACTGTAGGATTACCAATGGTATATCTCAAGCATTGAAAATCTTTGAGAATAAAGCTTTTACATGTGAATACAAGTGAGTCCTCTTCTCTTTGATTGTTTCTTTTAACTCAGTCCTTATATGCATGCATCATTTGTGATCTTTATCTTGTTGATCAGCTCATGAATCGTGCTTCTTAAAAAATTTAGTGCAAACCATGTTATGTATTCTTTTTGGCAAATAGATGAACTTGGATTTATGGTGATTTTATTTGGAAATGTATATAATTTCTTATAAACAGTATTGAACCTCTCATTGTAACTAAAAGATAAAAAATGTTAAAAGAACTGATAATGGAGTAAAATAAAAATAAAATTGAATATAAAGGTCAAGGACCCTTTGTTATCCAATCCAATGCTATCTTAAAAGCCTTATTTCTCCATGGGTAGGACCAACTAAGAAGAGCATGAATAGAGAATAGGGTTCCATCTTTAAAAGCCTAAAATACATAGCACAAACTCCATGAATTAGTGCGAATGAGAGAGGAGAGAGGACAGGCAGTAACACAAAAGGTGAACGCATGCGTAAATGTTAAAATTAGAGGGTGAGGGAGAGAATCATCGAGGAATAGCACGTTAGTGATTTTAAGATTAAAAAAATTAAAAATAAGCTTTAATAAAAAATAGGGCTGTATTTTATCTTTTCAATGTTTTCAATTATGCGTTTATTATAGATTTAAAAACTGGATCTCAATGTTTTCGATTACGTGTGTAATATAAACTTAAAAACCTGATCTCAATTTAGTCCATTGTTAAAAATATGTTTCATAATATACTATAAATGGTGAAACTTGTGGTAGTTACTAACTAAAATATTTAGTTGAATTTCAAATAGGGTTGTTTTCAAATATAGAAAAATGAATCAAACTATTTACAAGTATAGAAAAATTTTACAATCTATCACATAGAATTCTATCGCTGTCTATCGCTCAAGCGATAAAATTTATTTGCTTGAGCGATAGAAAGCAATAGAATTTTATTGCGGTCTATCACTGATCGACAGTGAAATTTTTCTATATTTGTAAATAGTTTGATACTTTTTCTGTTTATAGTAATTTCTCTTTCAATTATTAGTAATAAATTTATTGCATATTTTACTTTTCAAAATTTTAAGTTGACCCAAAAGCTTAAGTTTATGGGTGAAGGCAAATTTAGTATTATATCATCTAAGAGTGTTATTTTACAATATTATATAATTTATAGGAAAATTATTATAAATAGAAAAAATATCAAAATATTTACAAATATAGAAAAATTTCATTTTCACTGTCTATCAGCGGTAAACCGCAATAGACTTCTATCGCTGATAGACAGTAAAATTTTTCTATATTTGAAAACAGACCTAATTTATATTATATATGGTTCATGTTTTATCATAACTTTGTTTTTAACAAAAATAGAGTGATGAGTTATAATATGAAACTGTACATTTGTTTTATTTTTTTTTAGGGTGATTTTTCATTTTTTAAATTTCAAGTTTAGAATCTGGAAACATGTTTTCAAACTTTTCACTCAAACAAAGTCCAGCTGTTCTAAAAATAAATCCACTATACATGCCCTTATTCTCCATTCTTCTGTGTCCTTACCTTCTCCTGCAGATTTAAAATTTGAACATTTTTTGGTAGTTTAGTTGCATTCTCCACTTTATTTTAAGTTTTCTTTTTATGTATTTAGATATGATGGTCAGCGTGCACAAATTCACAAATTGGCAGATGGTTCTGTGCGAGTTTTCTCTCGGAACAGTGATGATACTACGTCAAAATTTCCAGATTTGATTGAAATAATTAATGAATTATGTAAACCTGCTGCCTCAACTTTCATACTGGATGCCGAGGTAAGAGCTTGCTGTCAGTCACTGTTTGAACCTTTATCTTATGAACTCTTTATCGGTTCTGTTGGTTGACAATACTTCTTTACCACAAAATGATATTTTGCTACTGCATGCTCTAGGTTGTTGCTGTTGATAGAAAAAATAATTGCAGACTAATGTCTTTCCAAGAATTATCATCACGTGGGAGAGGGAGCAAAGGCTCACTGATTGCTGTTGATAGCATAAAGGTATATCGTTACTTTTTAGTTTTACCCGACATGGATTGTTGCTCTGTAGCACCGATAGCAATGTATAGCATGTCCTTTTAATGTTCTCTATAGTACGGACGAAAGACTATCTAGCATTACTCTTTTAGTTACTATTTTGAACAGTGAAGTTTCCTGATTTTTCTCCCCTTGCTCCTTGTTTTGGAATAACATAAGAGAGAAGTATCATTTTTTTCCTTTTTGCTTGTGCCGTTTTGGAGCTTCTCTTGTTTCAAAGTTCAAATTTATAACGATACTTGAAATCGAGCAAGTTGTTTATTTTCATTTTTTCTGCTGAAATTGTTGTTTTCTTATCTATTTATTTATTATTATCTATGTATCAATCATTATCAAACCAAATGTGCGACCATCGAAACTAATTTTGGACATCATTTGAGATATCCACGGAACATTTTATTTCTTTCTCATTGAACTGAATCTGTTTTTGTTGAGAGTAGCATCTCCATACTAGGACTAAGCCTGACCTAAATACTTCTGTGGATGCTATGAGTTGAAAAGAGTTTAGTGGTTTCACTTACTTGGATATCTATGTTTCCCTTTATGGTTGATTCATTGTGTAAACGAGATAACTTCTTGTTCATTTTATTTATATCGTTCAACCAGCTCAGTTCTAATAGCCATGCCTGTTCAAAATATAACAGGAAAGAGAGAGGGTAGGGTATATACAAGGAAGAAAACGTAAAATTAAAAAGGAAAAAACAGTTATAAGCTATACAAAAAGGAATGTGTTTAAGATTAATTAGTACTAAAAAATAAATGGGCATAAACATTGAGTCTCTTGTAAACGTTCTTCAACAGATTTGACGTATGATGCATTTTTTTTTTCTTTTTTGTATTGTTTTGGAATCAATCACTTTTCTGTAACATCCATTCTGAGAAGTATGTGTTGTACCCCATAGCTGCTGTATGCTGATAAAATGTTCAAATTTATCCGTTCCTCTAATACTTGTTTGTTTTTGCAGGTTGATATTTGTTTGTTTGTCTTTGACATCATGCTTGTCAATGGAGAGCAGTAA

mRNA sequence

ATGTCGAAAACTGTTGTTCATGCTCTGGCCCAGGCTGTTTTCATAAGTTCGTCTCTCAAGATTTACAAGGAAGGAATGGTGGAAAATTTAAAGGAGAAGCTTCAGAACTTTTCAGCTACTGTACTAGATGCATACAATGTTCTTCCAAATTTTGATCTGATTGTTCCTTCTCTTATGGGCAAAGGGATTGAATTCTCATCATCGTCTTTATCAATGGTTCCAGGAATACCTATTAAGCCAATGCTCGCGAAGATTACCAATGGTATATCTCAAGCATTGAAAATCTTTGAGAATAAAGCTTTTACATGTGAATACAAATATGATGGTCAGCGTGCACAAATTCACAAATTGGCAGATGGTTCTGTGCGAGTTTTCTCTCGGAACAGTGATGATACTACGTCAAAATTTCCAGATTTGATTGAAATAATTAATGAATTATGTAAACCTGCTGCCTCAACTTTCATACTGGATGCCGAGGTTGTTGCTGTTGATAGAAAAAATAATTGCAGACTAATGTCTTTCCAAGAATTATCATCACGTGGGAGAGGGAGCAAAGGCTCACTGATTGCTGTTGATAGCATAAAGGTTGATATTTGTTTGTTTGTCTTTGACATCATGCTTGTCAATGGAGAGCAGTAA

Coding sequence (CDS)

ATGTCGAAAACTGTTGTTCATGCTCTGGCCCAGGCTGTTTTCATAAGTTCGTCTCTCAAGATTTACAAGGAAGGAATGGTGGAAAATTTAAAGGAGAAGCTTCAGAACTTTTCAGCTACTGTACTAGATGCATACAATGTTCTTCCAAATTTTGATCTGATTGTTCCTTCTCTTATGGGCAAAGGGATTGAATTCTCATCATCGTCTTTATCAATGGTTCCAGGAATACCTATTAAGCCAATGCTCGCGAAGATTACCAATGGTATATCTCAAGCATTGAAAATCTTTGAGAATAAAGCTTTTACATGTGAATACAAATATGATGGTCAGCGTGCACAAATTCACAAATTGGCAGATGGTTCTGTGCGAGTTTTCTCTCGGAACAGTGATGATACTACGTCAAAATTTCCAGATTTGATTGAAATAATTAATGAATTATGTAAACCTGCTGCCTCAACTTTCATACTGGATGCCGAGGTTGTTGCTGTTGATAGAAAAAATAATTGCAGACTAATGTCTTTCCAAGAATTATCATCACGTGGGAGAGGGAGCAAAGGCTCACTGATTGCTGTTGATAGCATAAAGGTTGATATTTGTTTGTTTGTCTTTGACATCATGCTTGTCAATGGAGAGCAGTAA

Protein sequence

MSKTVVHALAQAVFISSSLKIYKEGMVENLKEKLQNFSATVLDAYNVLPNFDLIVPSLMGKGIEFSSSSLSMVPGIPIKPMLAKITNGISQALKIFENKAFTCEYKYDGQRAQIHKLADGSVRVFSRNSDDTTSKFPDLIEIINELCKPAASTFILDAEVVAVDRKNNCRLMSFQELSSRGRGSKGSLIAVDSIKVDICLFVFDIMLVNGEQ

Homology

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BLAST of HG10002729 vs. NCBI nr
Match: XP_038878216.1 (DNA ligase 6-like isoform X1 [Benincasa hispida])

HSP 1 Score: 397.1 bits (1019), Expect = 9.4e-107
Identity = 202/212 (95.28%), Postives = 209/212 (98.58%), Query Frame = 0


Query: 1    MSKTVVHALAQAVFISSSLKIYKEGMVENLKEKLQNFSATVLDAYNVLPNFDLIVPSLMG 60
            MSKTV+HALAQAVFI+SSL I+KEGMVENLKEKLQNFSATVLDAYN+LPNFDLIVPSLM 
Sbjct: 982  MSKTVLHALAQAVFITSSLNIFKEGMVENLKEKLQNFSATVLDAYNLLPNFDLIVPSLMS 1041

Query: 61   KGIEFSSSSLSMVPGIPIKPMLAKITNGISQALKIFENKAFTCEYKYDGQRAQIHKLADG 120
            KGIEFSSSSLSMVPGIPIKPMLAKITNGISQALKIFENKAFTCE+KYDGQRAQIHKLADG
Sbjct: 1042 KGIEFSSSSLSMVPGIPIKPMLAKITNGISQALKIFENKAFTCEFKYDGQRAQIHKLADG 1101

Query: 121  SVRVFSRNSDDTTSKFPDLIEIINELCKPAASTFILDAEVVAVDRKNNCRLMSFQELSSR 180
            SVRVFSRNSDDTTSKFPDLIEIINELCKPAASTFILDAEVVAVDRKNNCRLMSFQELSSR
Sbjct: 1102 SVRVFSRNSDDTTSKFPDLIEIINELCKPAASTFILDAEVVAVDRKNNCRLMSFQELSSR 1161

Query: 181  GRGSKGSLIAVDSIKVDICLFVFDIMLVNGEQ 213
            GRGSKGSL+AVDSIKVDIC+FVFDIML NGEQ
Sbjct: 1162 GRGSKGSLVAVDSIKVDICVFVFDIMLANGEQ 1193

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BLAST of HG10002729 vs. NCBI nr
Match: XP_038878217.1 (DNA ligase 6-like isoform X2 [Benincasa hispida])

HSP 1 Score: 397.1 bits (1019), Expect = 9.4e-107
Identity = 202/212 (95.28%), Postives = 209/212 (98.58%), Query Frame = 0


Query: 1    MSKTVVHALAQAVFISSSLKIYKEGMVENLKEKLQNFSATVLDAYNVLPNFDLIVPSLMG 60
            MSKTV+HALAQAVFI+SSL I+KEGMVENLKEKLQNFSATVLDAYN+LPNFDLIVPSLM 
Sbjct: 982  MSKTVLHALAQAVFITSSLNIFKEGMVENLKEKLQNFSATVLDAYNLLPNFDLIVPSLMS 1041

Query: 61   KGIEFSSSSLSMVPGIPIKPMLAKITNGISQALKIFENKAFTCEYKYDGQRAQIHKLADG 120
            KGIEFSSSSLSMVPGIPIKPMLAKITNGISQALKIFENKAFTCE+KYDGQRAQIHKLADG
Sbjct: 1042 KGIEFSSSSLSMVPGIPIKPMLAKITNGISQALKIFENKAFTCEFKYDGQRAQIHKLADG 1101

Query: 121  SVRVFSRNSDDTTSKFPDLIEIINELCKPAASTFILDAEVVAVDRKNNCRLMSFQELSSR 180
            SVRVFSRNSDDTTSKFPDLIEIINELCKPAASTFILDAEVVAVDRKNNCRLMSFQELSSR
Sbjct: 1102 SVRVFSRNSDDTTSKFPDLIEIINELCKPAASTFILDAEVVAVDRKNNCRLMSFQELSSR 1161

Query: 181  GRGSKGSLIAVDSIKVDICLFVFDIMLVNGEQ 213
            GRGSKGSL+AVDSIKVDIC+FVFDIML NGEQ
Sbjct: 1162 GRGSKGSLVAVDSIKVDICVFVFDIMLANGEQ 1193

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BLAST of HG10002729 vs. NCBI nr
Match: XP_022158502.1 (DNA ligase 6-like isoform X2 [Momordica charantia])

HSP 1 Score: 387.5 bits (994), Expect = 7.4e-104
Identity = 199/212 (93.87%), Postives = 203/212 (95.75%), Query Frame = 0


Query: 1    MSKTVVHALAQAVFISSSLKIYKEGMVENLKEKLQNFSATVLDAYNVLPNFDLIVPSLMG 60
            M KTV+HALAQAVFISSSL +YKEGMV NLKEKLQ FSA VLDAYNVLPNFDLIVPSLMG
Sbjct: 963  MLKTVLHALAQAVFISSSLNMYKEGMVANLKEKLQYFSAAVLDAYNVLPNFDLIVPSLMG 1022

Query: 61   KGIEFSSSSLSMVPGIPIKPMLAKITNGISQALKIFENKAFTCEYKYDGQRAQIHKLADG 120
            KGIEFSSSSLSMVPGIPIKPMLAKITNGI QALKIFENKAFTCEYKYDGQRAQIHKLADG
Sbjct: 1023 KGIEFSSSSLSMVPGIPIKPMLAKITNGIPQALKIFENKAFTCEYKYDGQRAQIHKLADG 1082

Query: 121  SVRVFSRNSDDTTSKFPDLIEIINELCKPAASTFILDAEVVAVDRKNNCRLMSFQELSSR 180
            SVRVFSRNSDDTTSKFPDLI IINELCKPAASTFILDAEVVAVDR+NNCRLMSFQELSSR
Sbjct: 1083 SVRVFSRNSDDTTSKFPDLINIINELCKPAASTFILDAEVVAVDRRNNCRLMSFQELSSR 1142

Query: 181  GRGSKGSLIAVDSIKVDICLFVFDIMLVNGEQ 213
            GRGSKG LIAVDSIKVDIC+FVFDIML NGEQ
Sbjct: 1143 GRGSKGLLIAVDSIKVDICIFVFDIMLANGEQ 1174

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BLAST of HG10002729 vs. NCBI nr
Match: XP_022158501.1 (DNA ligase 6-like isoform X1 [Momordica charantia])

HSP 1 Score: 387.5 bits (994), Expect = 7.4e-104
Identity = 199/212 (93.87%), Postives = 203/212 (95.75%), Query Frame = 0


Query: 1    MSKTVVHALAQAVFISSSLKIYKEGMVENLKEKLQNFSATVLDAYNVLPNFDLIVPSLMG 60
            M KTV+HALAQAVFISSSL +YKEGMV NLKEKLQ FSA VLDAYNVLPNFDLIVPSLMG
Sbjct: 967  MLKTVLHALAQAVFISSSLNMYKEGMVANLKEKLQYFSAAVLDAYNVLPNFDLIVPSLMG 1026

Query: 61   KGIEFSSSSLSMVPGIPIKPMLAKITNGISQALKIFENKAFTCEYKYDGQRAQIHKLADG 120
            KGIEFSSSSLSMVPGIPIKPMLAKITNGI QALKIFENKAFTCEYKYDGQRAQIHKLADG
Sbjct: 1027 KGIEFSSSSLSMVPGIPIKPMLAKITNGIPQALKIFENKAFTCEYKYDGQRAQIHKLADG 1086

Query: 121  SVRVFSRNSDDTTSKFPDLIEIINELCKPAASTFILDAEVVAVDRKNNCRLMSFQELSSR 180
            SVRVFSRNSDDTTSKFPDLI IINELCKPAASTFILDAEVVAVDR+NNCRLMSFQELSSR
Sbjct: 1087 SVRVFSRNSDDTTSKFPDLINIINELCKPAASTFILDAEVVAVDRRNNCRLMSFQELSSR 1146

Query: 181  GRGSKGSLIAVDSIKVDICLFVFDIMLVNGEQ 213
            GRGSKG LIAVDSIKVDIC+FVFDIML NGEQ
Sbjct: 1147 GRGSKGLLIAVDSIKVDICIFVFDIMLANGEQ 1178

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BLAST of HG10002729 vs. NCBI nr
Match: XP_008444062.1 (PREDICTED: DNA ligase 1 isoform X2 [Cucumis melo])

HSP 1 Score: 376.3 bits (965), Expect = 1.7e-100
Identity = 193/212 (91.04%), Postives = 201/212 (94.81%), Query Frame = 0


Query: 1    MSKTVVHALAQAVFISSSLKIYKEGMVENLKEKLQNFSATVLDAYNVLPNFDLIVPSLMG 60
            M KTV+HAL+QAVFISSSL IYKE M+ NLKEKLQNFSATVLDAYNVLPNFDLIVPSLMG
Sbjct: 942  MLKTVLHALSQAVFISSSLNIYKEEMLGNLKEKLQNFSATVLDAYNVLPNFDLIVPSLMG 1001

Query: 61   KGIEFSSSSLSMVPGIPIKPMLAKITNGISQALKIFENKAFTCEYKYDGQRAQIHKLADG 120
            KGIEFSSSSLSMVPGIPIKPMLAKITNGI +ALKIFENKAFTCEYKYDGQRAQIHKLADG
Sbjct: 1002 KGIEFSSSSLSMVPGIPIKPMLAKITNGIPRALKIFENKAFTCEYKYDGQRAQIHKLADG 1061

Query: 121  SVRVFSRNSDDTTSKFPDLIEIINELCKPAASTFILDAEVVAVDRKNNCRLMSFQELSSR 180
            S+RVFSRNSDDTTSKFPDLI+IINEL KPA STFILDAEVV VDRKNNCRLMSFQELSSR
Sbjct: 1062 SLRVFSRNSDDTTSKFPDLIKIINELSKPAVSTFILDAEVVGVDRKNNCRLMSFQELSSR 1121

Query: 181  GRGSKGSLIAVDSIKVDICLFVFDIMLVNGEQ 213
            GRG+K SLIAVDSIKVDIC+F FDIML NGEQ
Sbjct: 1122 GRGNKDSLIAVDSIKVDICVFAFDIMLANGEQ 1153

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BLAST of HG10002729 vs. ExPASy Swiss-Prot
Match: F4HPZ9 (DNA ligase 6 OS=Arabidopsis thaliana OX=3702 GN=LIG6 PE=2 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 1.1e-68
Identity = 129/213 (60.56%), Postives = 169/213 (79.34%), Query Frame = 0


Query: 1    MSKTVVHALAQAVFISSSLKIYKEGMVEN-LKEKLQNFSATVLDAYNVLPNFDLIVPSLM 60
            M +TV+ AL +A+ ++S    + + + E+  +EKL+  SA V++AYN+LP+ D++VPSLM
Sbjct: 933  MLRTVLPALGRAIVMNSFWNDHNKELSESCFREKLEGVSAAVVEAYNILPSLDVVVPSLM 992

Query: 61   GKGIEFSSSSLSMVPGIPIKPMLAKITNGISQALKIFENKAFTCEYKYDGQRAQIHKLAD 120
             K IEFS+S+LSMVPGIPIKPMLAKI  G+ +   + + KAFTCEYKYDGQRAQIHKL D
Sbjct: 993  DKDIEFSTSTLSMVPGIPIKPMLAKIAKGVQEFFNLSQEKAFTCEYKYDGQRAQIHKLLD 1052

Query: 121  GSVRVFSRNSDDTTSKFPDLIEIINELCKPAASTFILDAEVVAVDRKNNCRLMSFQELSS 180
            G+V +FSRN D+TTS+FPDL+++I +   PAA TF+LDAEVVA DR N  +LMSFQELS+
Sbjct: 1053 GTVCIFSRNGDETTSRFPDLVDVIKQFSCPAAETFMLDAEVVATDRINGNKLMSFQELST 1112

Query: 181  RGRGSKGSLIAVDSIKVDICLFVFDIMLVNGEQ 213
            R RGSK +LI  +SIKV++C+FVFDIM VNGEQ
Sbjct: 1113 RERGSKDALITTESIKVEVCVFVFDIMFVNGEQ 1145

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BLAST of HG10002729 vs. ExPASy Swiss-Prot
Match: Q869E1 (DNA ligase 1 OS=Dictyostelium discoideum OX=44689 GN=lig1 PE=3 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 2.1e-40
Identity = 90/218 (41.28%), Postives = 137/218 (62.84%), Query Frame = 0


Query: 3   KTVVHALAQAVFISSSL--------KIYKEGMVENLKEKLQNFSATVLDAYNVLPNFDLI 62
           ++V+ ALA++V ++  +         I K+   E  +E+ QN  + V  AY+ LPN+DL 
Sbjct: 732 RSVLMALAKSVLVTPPIDGSGQQIFDIRKQMKQEEFEERYQNVVSKVTRAYSQLPNYDLF 791

Query: 63  VPSLMG-KGIEFSSSSLSMVPGIPIKPMLAKITNGISQALKIFENKAFTCEYKYDGQRAQ 122
           VP L+   GI+   S+ S+  GIP+KPMLA+ T GISQ L  F +  FTCE+KYDG+RAQ
Sbjct: 792 VPHLIAVNGIDNILSTCSLKVGIPVKPMLAQPTTGISQMLDRFSDMEFTCEFKYDGERAQ 851

Query: 123 IHKLADGSVRVFSRNSDDTTSKFPDLIEIINELCKPAASTFILDAEVVAVDRKNNCRLMS 182
           IH+L DG+  +++RN +D T K+PD++  + +   P   +FILD E VA D     +++S
Sbjct: 852 IHRLPDGTTHIYTRNLEDYTQKYPDIVANVTKFVGPNVKSFILDCEAVAFDAATK-KILS 911

Query: 183 FQELSSRGRGSKGSLIAVDSIKVDICLFVFDIMLVNGE 212
           FQ LS+R R S    + +  IKV +C+F FD++ +NG+
Sbjct: 912 FQVLSTRARKS----VQLSQIKVPVCVFAFDLLYLNGQ 944

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BLAST of HG10002729 vs. ExPASy Swiss-Prot
Match: P18858 (DNA ligase 1 OS=Homo sapiens OX=9606 GN=LIG1 PE=1 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.5e-38
Identity = 90/217 (41.47%), Postives = 131/217 (60.37%), Query Frame = 0


Query: 3   KTVVHALAQAVFISSSLKIYKEGMVENLKEKLQNFSATVLDAYNVL--------PNFDLI 62
           ++V+ AL+QAV ++   + +   MV+  K K      T L+   ++        P+ D I
Sbjct: 457 QSVLAALSQAVSLTPPGQEFPPAMVDAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRI 516

Query: 63  VPSLMGKGIEFSSSSLSMVPGIPIKPMLAKITNGISQALKIFENKAFTCEYKYDGQRAQI 122
           +P L+  G+E       + PGIP+KPMLA  T GIS+ LK FE  AFTCEYKYDGQRAQI
Sbjct: 517 IPVLLEHGLERLPEHCKLSPGIPLKPMLAHPTRGISEVLKRFEEAAFTCEYKYDGQRAQI 576

Query: 123 HKLADGSVRVFSRNSDDTTSKFPDLIEIINELCKPAASTFILDAEVVAVDRKNNCRLMSF 182
           H L  G V++FSRN +D T K+PD+I  I ++  P+ ++FILD E VA DR+   ++  F
Sbjct: 577 HALEGGEVKIFSRNQEDNTGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKK-QIQPF 636

Query: 183 QELSSRGRGSKGSLIAVDSIKVDICLFVFDIMLVNGE 212
           Q L++R R      +    I+V +CL+ FD++ +NGE
Sbjct: 637 QVLTTRKRKE----VDASEIQVQVCLYAFDLIYLNGE 668

[Close]

BLAST of HG10002729 vs. ExPASy Swiss-Prot
Match: Q42572 (DNA ligase 1 OS=Arabidopsis thaliana OX=3702 GN=LIG1 PE=2 SV=2)

HSP 1 Score: 160.6 bits (405), Expect = 1.9e-38
Identity = 86/213 (40.38%), Postives = 133/213 (62.44%), Query Frame = 0


Query: 3   KTVVHALAQAVFISSSLKIYKEGMVE---NLKEKLQNFSATVLDAYNVLPNFDLIVPSLM 62
           +TV+ AL QA        +Y E   +   N K  L+  +  V   + VLP +D+IVP+L+
Sbjct: 345 QTVLAALGQAA-------VYNEEHSKPPPNTKSPLEEAAKIVKQVFTVLPVYDIIVPALL 404

Query: 63  GKGIEFSSSSLSMVPGIPIKPMLAKITNGISQALKIFENKAFTCEYKYDGQRAQIHKLAD 122
             G+     + +   G+PI PMLAK T G+++ L  F++  FTCEYKYDG+RAQIH + D
Sbjct: 405 SGGVWNLPKTCNFTLGVPIGPMLAKPTKGVAEILNKFQDIVFTCEYKYDGERAQIHFMED 464

Query: 123 GSVRVFSRNSDDTTSKFPDLIEIINELCKPAASTFILDAEVVAVDRKNNCRLMSFQELSS 182
           G+  ++SRN++  T K+PD+   ++ L KP+  +FILD EVVA DR+   +++ FQ LS+
Sbjct: 465 GTFEIYSRNAERNTGKYPDVALALSRLKKPSVKSFILDCEVVAFDREKK-KILPFQILST 524

Query: 183 RGRGSKGSLIAVDSIKVDICLFVFDIMLVNGEQ 213
           R R +    + V+ IKV +C+F FD++ +NG+Q
Sbjct: 525 RARKN----VNVNDIKVGVCIFAFDMLYLNGQQ 545

[Close]

BLAST of HG10002729 vs. ExPASy Swiss-Prot
Match: P37913 (DNA ligase 1 OS=Mus musculus OX=10090 GN=Lig1 PE=1 SV=2)

HSP 1 Score: 154.5 bits (389), Expect = 1.4e-36
Identity = 86/217 (39.63%), Postives = 130/217 (59.91%), Query Frame = 0


Query: 3   KTVVHALAQAVFISSSLKIYKEGMVENLKEK--------LQNFSATVLDAYNVLPNFDLI 62
           ++V+ ALAQAV ++   + +   +V+  K K        L+     +   +  +P+ D I
Sbjct: 455 QSVLAALAQAVSLTPPGQEFPTVVVDAGKGKTAEARKMWLEEQGMILKQTFCEVPDLDRI 514

Query: 63  VPSLMGKGIEFSSSSLSMVPGIPIKPMLAKITNGISQALKIFENKAFTCEYKYDGQRAQI 122
           +P L+  G+E       + PG+P+KPMLA  T G+S+ LK FE   FTCEYKYDGQRAQI
Sbjct: 515 IPVLLEHGLERLPEHCKLSPGVPLKPMLAHPTRGVSEVLKRFEEVDFTCEYKYDGQRAQI 574

Query: 123 HKLADGSVRVFSRNSDDTTSKFPDLIEIINELCKPAASTFILDAEVVAVDRKNNCRLMSF 182
           H L  G V++FSRN +D T K+PD+I  I ++  P+ ++FILD E VA DR+   ++  F
Sbjct: 575 HVLEGGEVKIFSRNQEDNTGKYPDIISRIPKIKHPSVTSFILDTEAVAWDREKK-QIQPF 634

Query: 183 QELSSRGRGSKGSLIAVDSIKVDICLFVFDIMLVNGE 212
           Q L++R R      +    I+V +CL+ FD++ +NGE
Sbjct: 635 QVLTTRKRKE----VDASEIQVQVCLYAFDLIYLNGE 666

[Close]

BLAST of HG10002729 vs. ExPASy TrEMBL
Match: A0A6J1DXE4 (DNA ligase OS=Momordica charantia OX=3673 GN=LOC111024977 PE=3 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 3.6e-104
Identity = 199/212 (93.87%), Postives = 203/212 (95.75%), Query Frame = 0


Query: 1    MSKTVVHALAQAVFISSSLKIYKEGMVENLKEKLQNFSATVLDAYNVLPNFDLIVPSLMG 60
            M KTV+HALAQAVFISSSL +YKEGMV NLKEKLQ FSA VLDAYNVLPNFDLIVPSLMG
Sbjct: 963  MLKTVLHALAQAVFISSSLNMYKEGMVANLKEKLQYFSAAVLDAYNVLPNFDLIVPSLMG 1022

Query: 61   KGIEFSSSSLSMVPGIPIKPMLAKITNGISQALKIFENKAFTCEYKYDGQRAQIHKLADG 120
            KGIEFSSSSLSMVPGIPIKPMLAKITNGI QALKIFENKAFTCEYKYDGQRAQIHKLADG
Sbjct: 1023 KGIEFSSSSLSMVPGIPIKPMLAKITNGIPQALKIFENKAFTCEYKYDGQRAQIHKLADG 1082

Query: 121  SVRVFSRNSDDTTSKFPDLIEIINELCKPAASTFILDAEVVAVDRKNNCRLMSFQELSSR 180
            SVRVFSRNSDDTTSKFPDLI IINELCKPAASTFILDAEVVAVDR+NNCRLMSFQELSSR
Sbjct: 1083 SVRVFSRNSDDTTSKFPDLINIINELCKPAASTFILDAEVVAVDRRNNCRLMSFQELSSR 1142

Query: 181  GRGSKGSLIAVDSIKVDICLFVFDIMLVNGEQ 213
            GRGSKG LIAVDSIKVDIC+FVFDIML NGEQ
Sbjct: 1143 GRGSKGLLIAVDSIKVDICIFVFDIMLANGEQ 1174

[Close]

BLAST of HG10002729 vs. ExPASy TrEMBL
Match: A0A6J1E130 (DNA ligase OS=Momordica charantia OX=3673 GN=LOC111024977 PE=3 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 3.6e-104
Identity = 199/212 (93.87%), Postives = 203/212 (95.75%), Query Frame = 0


Query: 1    MSKTVVHALAQAVFISSSLKIYKEGMVENLKEKLQNFSATVLDAYNVLPNFDLIVPSLMG 60
            M KTV+HALAQAVFISSSL +YKEGMV NLKEKLQ FSA VLDAYNVLPNFDLIVPSLMG
Sbjct: 967  MLKTVLHALAQAVFISSSLNMYKEGMVANLKEKLQYFSAAVLDAYNVLPNFDLIVPSLMG 1026

Query: 61   KGIEFSSSSLSMVPGIPIKPMLAKITNGISQALKIFENKAFTCEYKYDGQRAQIHKLADG 120
            KGIEFSSSSLSMVPGIPIKPMLAKITNGI QALKIFENKAFTCEYKYDGQRAQIHKLADG
Sbjct: 1027 KGIEFSSSSLSMVPGIPIKPMLAKITNGIPQALKIFENKAFTCEYKYDGQRAQIHKLADG 1086

Query: 121  SVRVFSRNSDDTTSKFPDLIEIINELCKPAASTFILDAEVVAVDRKNNCRLMSFQELSSR 180
            SVRVFSRNSDDTTSKFPDLI IINELCKPAASTFILDAEVVAVDR+NNCRLMSFQELSSR
Sbjct: 1087 SVRVFSRNSDDTTSKFPDLINIINELCKPAASTFILDAEVVAVDRRNNCRLMSFQELSSR 1146

Query: 181  GRGSKGSLIAVDSIKVDICLFVFDIMLVNGEQ 213
            GRGSKG LIAVDSIKVDIC+FVFDIML NGEQ
Sbjct: 1147 GRGSKGLLIAVDSIKVDICIFVFDIMLANGEQ 1178

[Close]

BLAST of HG10002729 vs. ExPASy TrEMBL
Match: A0A1S3BA94 (DNA ligase OS=Cucumis melo OX=3656 GN=LOC103487505 PE=3 SV=1)

HSP 1 Score: 376.3 bits (965), Expect = 8.3e-101
Identity = 193/212 (91.04%), Postives = 201/212 (94.81%), Query Frame = 0


Query: 1    MSKTVVHALAQAVFISSSLKIYKEGMVENLKEKLQNFSATVLDAYNVLPNFDLIVPSLMG 60
            M KTV+HAL+QAVFISSSL IYKE M+ NLKEKLQNFSATVLDAYNVLPNFDLIVPSLMG
Sbjct: 942  MLKTVLHALSQAVFISSSLNIYKEEMLGNLKEKLQNFSATVLDAYNVLPNFDLIVPSLMG 1001

Query: 61   KGIEFSSSSLSMVPGIPIKPMLAKITNGISQALKIFENKAFTCEYKYDGQRAQIHKLADG 120
            KGIEFSSSSLSMVPGIPIKPMLAKITNGI +ALKIFENKAFTCEYKYDGQRAQIHKLADG
Sbjct: 1002 KGIEFSSSSLSMVPGIPIKPMLAKITNGIPRALKIFENKAFTCEYKYDGQRAQIHKLADG 1061

Query: 121  SVRVFSRNSDDTTSKFPDLIEIINELCKPAASTFILDAEVVAVDRKNNCRLMSFQELSSR 180
            S+RVFSRNSDDTTSKFPDLI+IINEL KPA STFILDAEVV VDRKNNCRLMSFQELSSR
Sbjct: 1062 SLRVFSRNSDDTTSKFPDLIKIINELSKPAVSTFILDAEVVGVDRKNNCRLMSFQELSSR 1121

Query: 181  GRGSKGSLIAVDSIKVDICLFVFDIMLVNGEQ 213
            GRG+K SLIAVDSIKVDIC+F FDIML NGEQ
Sbjct: 1122 GRGNKDSLIAVDSIKVDICVFAFDIMLANGEQ 1153

[Close]

BLAST of HG10002729 vs. ExPASy TrEMBL
Match: A0A5A7VEZ9 (DNA ligase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G00160 PE=3 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 2.0e-99
Identity = 193/213 (90.61%), Postives = 201/213 (94.37%), Query Frame = 0


Query: 1    MSKTVVHALAQAVFISSSLKIYKEGMVENLKEKLQNFSATVLDAYNVLPNF-DLIVPSLM 60
            M KTV+HAL+QAVFISSSL IYKE M+ NLKEKLQNFSATVLDAYNVLPNF DLIVPSLM
Sbjct: 942  MLKTVLHALSQAVFISSSLNIYKEEMLGNLKEKLQNFSATVLDAYNVLPNFQDLIVPSLM 1001

Query: 61   GKGIEFSSSSLSMVPGIPIKPMLAKITNGISQALKIFENKAFTCEYKYDGQRAQIHKLAD 120
            GKGIEFSSSSLSMVPGIPIKPMLAKITNGI +ALKIFENKAFTCEYKYDGQRAQIHKLAD
Sbjct: 1002 GKGIEFSSSSLSMVPGIPIKPMLAKITNGIPRALKIFENKAFTCEYKYDGQRAQIHKLAD 1061

Query: 121  GSVRVFSRNSDDTTSKFPDLIEIINELCKPAASTFILDAEVVAVDRKNNCRLMSFQELSS 180
            GS+RVFSRNSDDTTSKFPDLI+IINEL KPA STFILDAEVV VDRKNNCRLMSFQELSS
Sbjct: 1062 GSLRVFSRNSDDTTSKFPDLIKIINELSKPAVSTFILDAEVVGVDRKNNCRLMSFQELSS 1121

Query: 181  RGRGSKGSLIAVDSIKVDICLFVFDIMLVNGEQ 213
            RGRG+K SLIAVDSIKVDIC+F FDIML NGEQ
Sbjct: 1122 RGRGNKDSLIAVDSIKVDICVFAFDIMLANGEQ 1154

[Close]

BLAST of HG10002729 vs. ExPASy TrEMBL
Match: A0A1S3B9K7 (uncharacterized protein LOC103487505 isoform X6 OS=Cucumis melo OX=3656 GN=LOC103487505 PE=3 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 2.0e-99
Identity = 193/213 (90.61%), Postives = 201/213 (94.37%), Query Frame = 0


Query: 1    MSKTVVHALAQAVFISSSLKIYKEGMVENLKEKLQNFSATVLDAYNVLPNF-DLIVPSLM 60
            M KTV+HAL+QAVFISSSL IYKE M+ NLKEKLQNFSATVLDAYNVLPNF DLIVPSLM
Sbjct: 942  MLKTVLHALSQAVFISSSLNIYKEEMLGNLKEKLQNFSATVLDAYNVLPNFQDLIVPSLM 1001

Query: 61   GKGIEFSSSSLSMVPGIPIKPMLAKITNGISQALKIFENKAFTCEYKYDGQRAQIHKLAD 120
            GKGIEFSSSSLSMVPGIPIKPMLAKITNGI +ALKIFENKAFTCEYKYDGQRAQIHKLAD
Sbjct: 1002 GKGIEFSSSSLSMVPGIPIKPMLAKITNGIPRALKIFENKAFTCEYKYDGQRAQIHKLAD 1061

Query: 121  GSVRVFSRNSDDTTSKFPDLIEIINELCKPAASTFILDAEVVAVDRKNNCRLMSFQELSS 180
            GS+RVFSRNSDDTTSKFPDLI+IINEL KPA STFILDAEVV VDRKNNCRLMSFQELSS
Sbjct: 1062 GSLRVFSRNSDDTTSKFPDLIKIINELSKPAVSTFILDAEVVGVDRKNNCRLMSFQELSS 1121

Query: 181  RGRGSKGSLIAVDSIKVDICLFVFDIMLVNGEQ 213
            RGRG+K SLIAVDSIKVDIC+F FDIML NGEQ
Sbjct: 1122 RGRGNKDSLIAVDSIKVDICVFAFDIMLANGEQ 1154

[Close]

BLAST of HG10002729 vs. TAIR 10
Match: AT1G66730.1 (DNA LIGASE 6 )

HSP 1 Score: 261.2 bits (666), Expect = 7.5e-70
Identity = 129/213 (60.56%), Postives = 169/213 (79.34%), Query Frame = 0


Query: 1    MSKTVVHALAQAVFISSSLKIYKEGMVEN-LKEKLQNFSATVLDAYNVLPNFDLIVPSLM 60
            M +TV+ AL +A+ ++S    + + + E+  +EKL+  SA V++AYN+LP+ D++VPSLM
Sbjct: 933  MLRTVLPALGRAIVMNSFWNDHNKELSESCFREKLEGVSAAVVEAYNILPSLDVVVPSLM 992

Query: 61   GKGIEFSSSSLSMVPGIPIKPMLAKITNGISQALKIFENKAFTCEYKYDGQRAQIHKLAD 120
             K IEFS+S+LSMVPGIPIKPMLAKI  G+ +   + + KAFTCEYKYDGQRAQIHKL D
Sbjct: 993  DKDIEFSTSTLSMVPGIPIKPMLAKIAKGVQEFFNLSQEKAFTCEYKYDGQRAQIHKLLD 1052

Query: 121  GSVRVFSRNSDDTTSKFPDLIEIINELCKPAASTFILDAEVVAVDRKNNCRLMSFQELSS 180
            G+V +FSRN D+TTS+FPDL+++I +   PAA TF+LDAEVVA DR N  +LMSFQELS+
Sbjct: 1053 GTVCIFSRNGDETTSRFPDLVDVIKQFSCPAAETFMLDAEVVATDRINGNKLMSFQELST 1112

Query: 181  RGRGSKGSLIAVDSIKVDICLFVFDIMLVNGEQ 213
            R RGSK +LI  +SIKV++C+FVFDIM VNGEQ
Sbjct: 1113 RERGSKDALITTESIKVEVCVFVFDIMFVNGEQ 1145

[Close]

BLAST of HG10002729 vs. TAIR 10
Match: AT1G08130.1 (DNA ligase 1 )

HSP 1 Score: 160.6 bits (405), Expect = 1.4e-39
Identity = 86/213 (40.38%), Postives = 133/213 (62.44%), Query Frame = 0


Query: 3   KTVVHALAQAVFISSSLKIYKEGMVE---NLKEKLQNFSATVLDAYNVLPNFDLIVPSLM 62
           +TV+ AL QA        +Y E   +   N K  L+  +  V   + VLP +D+IVP+L+
Sbjct: 345 QTVLAALGQAA-------VYNEEHSKPPPNTKSPLEEAAKIVKQVFTVLPVYDIIVPALL 404

Query: 63  GKGIEFSSSSLSMVPGIPIKPMLAKITNGISQALKIFENKAFTCEYKYDGQRAQIHKLAD 122
             G+     + +   G+PI PMLAK T G+++ L  F++  FTCEYKYDG+RAQIH + D
Sbjct: 405 SGGVWNLPKTCNFTLGVPIGPMLAKPTKGVAEILNKFQDIVFTCEYKYDGERAQIHFMED 464

Query: 123 GSVRVFSRNSDDTTSKFPDLIEIINELCKPAASTFILDAEVVAVDRKNNCRLMSFQELSS 182
           G+  ++SRN++  T K+PD+   ++ L KP+  +FILD EVVA DR+   +++ FQ LS+
Sbjct: 465 GTFEIYSRNAERNTGKYPDVALALSRLKKPSVKSFILDCEVVAFDREKK-KILPFQILST 524

Query: 183 RGRGSKGSLIAVDSIKVDICLFVFDIMLVNGEQ 213
           R R +    + V+ IKV +C+F FD++ +NG+Q
Sbjct: 525 RARKN----VNVNDIKVGVCIFAFDMLYLNGQQ 545

[Close]

BLAST of HG10002729 vs. TAIR 10
Match: AT1G49250.1 (ATP-dependent DNA ligase )

HSP 1 Score: 138.3 bits (347), Expect = 7.3e-33
Identity = 76/212 (35.85%), Postives = 128/212 (60.38%), Query Frame = 0


Query: 3   KTVVHALAQAVFISSSLKIYKEGMVE---NLKEKLQNFSATVLDAYNVLPNFDLIVPSLM 62
           +TV+ AL QA        +Y E   +   N+K  L   +  V + +++LP +D+IV +L+
Sbjct: 214 QTVLAALGQAA-------VYNEEHSKPPPNIKNPLDEAATIVKEVFSMLPVYDIIVGALL 273

Query: 63  GKGIEFSSSSLSMVPGIPIKPMLAKITNGISQALKIFENKAFTCEYKYDGQRAQIHKLAD 122
             G+     + ++  G+P++PMLAK T  +   L+ F++  FT EYKYDG+RAQI+ + D
Sbjct: 274 TSGVWNLPKTCNLTLGVPVRPMLAKATTRVDLILEKFKDTVFTAEYKYDGERAQIYYMED 333

Query: 123 GSVRVFSRNSDDTTSKFPDLIEIINELCKPAASTFILDAEVVAVDRKNNCRLMSFQELSS 182
           G+V +FSR+++  T K+PD+  +++ L KP   +FILD EVV  +R+   +++  Q  S+
Sbjct: 334 GTVEIFSRHAERNTGKYPDVALVLSRLKKPTVKSFILDCEVVTFNREKE-KILPLQ--ST 393

Query: 183 RGRGSKGSLIAVDSIKVDICLFVFDIMLVNGE 212
           R   +    + V  IKV +C+F FDI+ +NG+
Sbjct: 394 RAHKN----VNVSDIKVGVCVFAFDILYLNGQ 411

[Close]

BLAST of HG10002729 vs. TAIR 10
Match: AT5G57160.1 (DNA ligase IV )

HSP 1 Score: 53.9 bits (128), Expect = 1.8e-07
Identity = 53/190 (27.89%), Postives = 78/190 (41.05%), Query Frame = 0


Query: 19  LKIYKEGMVENLKEKLQNFSATVLDAYNVLPNFDLIVPSLMGKGIEFSSSSLSMVPGIPI 78
           LK  K GM E  K   Q F     D +NV  +  L+   L  +        + +  G  +
Sbjct: 170 LKDLKLGMSE--KSIFQEFHPDAEDLFNVTCDLKLVCEKLRDRHQRHKRQDIEV--GKAV 229

Query: 79  KPMLAKITNGISQALKIFENKAFTCEYKYDGQRAQIHKLADGSVRVFSRNSDDTTSKFPD 138
           +P LA     ++ A K    K    E K+DG R QIHK     +  FSRN  D +     
Sbjct: 230 RPQLAMRIGDVNAAWKKLHGKDVVAECKFDGDRIQIHKNGT-DIHYFSRNFLDHSEYAHA 289

Query: 139 LIEIINELCKPAASTFILDAEVVAVDRKNNCRLMSFQELSSRGRGSKGSLIAVDSIKVDI 198
           + ++I +         ILD E++  D   N     F E  S    +K +   +DS K  +
Sbjct: 290 MSDLIVQ--NILVDKCILDGEMLVWDTSLN----RFAEFGSNQEIAKAAREGLDSHK-QL 347

Query: 199 CLFVFDIMLV 209
           C   FD++ V
Sbjct: 350 CYVAFDVLYV 347

The following BLAST results are available for this feature:

BLAST of HG10002729 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878216.1	9.4e-107	95.28	DNA ligase 6-like isoform X1 [Benincasa hispida]	[more]
XP_038878217.1	9.4e-107	95.28	DNA ligase 6-like isoform X2 [Benincasa hispida]	[more]
XP_022158502.1	7.4e-104	93.87	DNA ligase 6-like isoform X2 [Momordica charantia]	[more]
XP_022158501.1	7.4e-104	93.87	DNA ligase 6-like isoform X1 [Momordica charantia]	[more]
XP_008444062.1	1.7e-100	91.04	PREDICTED: DNA ligase 1 isoform X2 [Cucumis melo]	[more]

BLAST of HG10002729 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4HPZ9	1.1e-68	60.56	DNA ligase 6 OS=Arabidopsis thaliana OX=3702 GN=LIG6 PE=2 SV=1	[more]
Q869E1	2.1e-40	41.28	DNA ligase 1 OS=Dictyostelium discoideum OX=44689 GN=lig1 PE=3 SV=1	[more]
P18858	1.5e-38	41.47	DNA ligase 1 OS=Homo sapiens OX=9606 GN=LIG1 PE=1 SV=1	[more]
Q42572	1.9e-38	40.38	DNA ligase 1 OS=Arabidopsis thaliana OX=3702 GN=LIG1 PE=2 SV=2	[more]
P37913	1.4e-36	39.63	DNA ligase 1 OS=Mus musculus OX=10090 GN=Lig1 PE=1 SV=2	[more]

BLAST of HG10002729 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DXE4	3.6e-104	93.87	DNA ligase OS=Momordica charantia OX=3673 GN=LOC111024977 PE=3 SV=1	[more]
A0A6J1E130	3.6e-104	93.87	DNA ligase OS=Momordica charantia OX=3673 GN=LOC111024977 PE=3 SV=1	[more]
A0A1S3BA94	8.3e-101	91.04	DNA ligase OS=Cucumis melo OX=3656 GN=LOC103487505 PE=3 SV=1	[more]
A0A5A7VEZ9	2.0e-99	90.61	DNA ligase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G00160 PE=...	[more]
A0A1S3B9K7	2.0e-99	90.61	uncharacterized protein LOC103487505 isoform X6 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of HG10002729 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G66730.1	7.5e-70	60.56	DNA LIGASE 6	[more]
AT1G08130.1	1.4e-39	40.38	DNA ligase 1	[more]
AT1G49250.1	7.3e-33	35.85	ATP-dependent DNA ligase	[more]
AT5G57160.1	1.8e-07	27.89	DNA ligase IV	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.470.30	DNA ligase/mRNA capping enzyme	coord: 80..212 e-value: 7.3E-41 score: 142.1
None	No IPR available	PANTHER	PTHR45674:SF9	DNA LIGASE 3	coord: 1..212
None	No IPR available	PANTHER	PTHR45674	DNA LIGASE 1/3 FAMILY MEMBER	coord: 1..212
None	No IPR available	SUPERFAMILY	56091	DNA ligase/mRNA capping enzyme, catalytic domain	coord: 75..211
IPR012310	DNA ligase, ATP-dependent, central	PFAM	PF01068	DNA_ligase_A_M	coord: 80..211 e-value: 1.2E-32 score: 113.2
IPR036599	DNA ligase, ATP-dependent, N-terminal domain superfamily	GENE3D	1.10.3260.10		coord: 1..79 e-value: 2.1E-16 score: 62.2
IPR016059	DNA ligase, ATP-dependent, conserved site	PROSITE	PS00697	DNA_LIGASE_A1	coord: 104..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10002729.1	HG10002729.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0006266	DNA ligation
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006281	DNA repair
biological_process	GO:0006260	DNA replication
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003910	DNA ligase (ATP) activity
molecular_function	GO:0003909	DNA ligase activity