HG10002727 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10002727
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	DNA ligase
Location	Chr11: 10860810 .. 10861217 (-)
RNA-Seq Expression	HG10002727
Synteny	HG10002727

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGATTGCCAGCATATTTCTGTTTACACGCTGCTTGCTTTTGATGGGTGCTGCTTGCTTTTGATAGTGGTATGCTTCTTTTTATTGAAAGTGCAGATGAAAGAATTCTTTTCTGAGGATAAAATTGTGTGTAAAAAGCCAGCTTACTATCAAACTGCCGAGGTTCCTGATATGTGGTTCGTGCCACAAGTTGTTTGGGAAATTAGAGGTGCAGACTTAACAGTGTCACCAGTTCACCAGGCTGCTGTAGGTTTAGTTCATCCTTCTCGTGGCATCTCAATCAGGTTTCCGAGATTTATTCGTTTGGTTCCTGATAGAAATCCAGAAGAATGTAGCACGGCTACAGATATAGCGGAAATGTTTAATTCTCAGACAAGGAAAATGGATGTTGCATCAGGAGATTGA

mRNA sequence

ATGAATGATTGCCAGCATATTTCTGTTTACACGCTGCTTGCTTTTGATGGGTGCTGCTTGCTTTTGATAGTGGTATGCTTCTTTTTATTGAAAGTGCAGATGAAAGAATTCTTTTCTGAGGATAAAATTGTGTGTAAAAAGCCAGCTTACTATCAAACTGCCGAGGTTCCTGATATGTGGTTCGTGCCACAAGTTGTTTGGGAAATTAGAGGTGCAGACTTAACAGTGTCACCAGTTCACCAGGCTGCTGTAGGTTTAGTTCATCCTTCTCGTGGCATCTCAATCAGGTTTCCGAGATTTATTCGTTTGGTTCCTGATAGAAATCCAGAAGAATGTAGCACGGCTACAGATATAGCGGAAATGTTTAATTCTCAGACAAGGAAAATGGATGTTGCATCAGGAGATTGA

Coding sequence (CDS)

ATGAATGATTGCCAGCATATTTCTGTTTACACGCTGCTTGCTTTTGATGGGTGCTGCTTGCTTTTGATAGTGGTATGCTTCTTTTTATTGAAAGTGCAGATGAAAGAATTCTTTTCTGAGGATAAAATTGTGTGTAAAAAGCCAGCTTACTATCAAACTGCCGAGGTTCCTGATATGTGGTTCGTGCCACAAGTTGTTTGGGAAATTAGAGGTGCAGACTTAACAGTGTCACCAGTTCACCAGGCTGCTGTAGGTTTAGTTCATCCTTCTCGTGGCATCTCAATCAGGTTTCCGAGATTTATTCGTTTGGTTCCTGATAGAAATCCAGAAGAATGTAGCACGGCTACAGATATAGCGGAAATGTTTAATTCTCAGACAAGGAAAATGGATGTTGCATCAGGAGATTGA

Protein sequence

MNDCQHISVYTLLAFDGCCLLLIVVCFFLLKVQMKEFFSEDKIVCKKPAYYQTAEVPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRLVPDRNPEECSTATDIAEMFNSQTRKMDVASGD

Homology

[Close]

BLAST of HG10002727 vs. NCBI nr
Match: XP_038878216.1 (DNA ligase 6-like isoform X1 [Benincasa hispida])

HSP 1 Score: 202.2 bits (513), Expect = 2.8e-48
Identity = 95/104 (91.35%), Postives = 99/104 (95.19%), Query Frame = 0


Query: 32   VQMKEFFSEDKIVCKKPAYYQTAEVPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSR 91
            ++MKEFFS D I+CKKPAYYQTAEVPDMWF+PQ VWEIRGADLTVSPVHQAAVGLVHPSR
Sbjct: 1341 IKMKEFFSGDNILCKKPAYYQTAEVPDMWFLPQFVWEIRGADLTVSPVHQAAVGLVHPSR 1400

Query: 92   GISIRFPRFIRLVPDRNPEECSTATDIAEMFNSQTRKMDVASGD 136
            GISIRFPRFIR VPDRNPEECSTA DIAEMFNSQTRKMDVASGD
Sbjct: 1401 GISIRFPRFIRSVPDRNPEECSTAADIAEMFNSQTRKMDVASGD 1444

[Close]

BLAST of HG10002727 vs. NCBI nr
Match: XP_008444061.1 (PREDICTED: DNA ligase 1 isoform X1 [Cucumis melo])

HSP 1 Score: 201.1 bits (510), Expect = 6.3e-48
Identity = 94/103 (91.26%), Postives = 99/103 (96.12%), Query Frame = 0


Query: 32   VQMKEFFSEDKIVCKKPAYYQTAEVPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSR 91
            ++MKEFFS DKI+CKKP YY+TAEVPDMWF+PQVVWEIRGADLTVSPVHQAAVGLVHP R
Sbjct: 1302 IEMKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVR 1361

Query: 92   GISIRFPRFIRLVPDRNPEECSTATDIAEMFNSQTRKMDVASG 135
            GISIRFPRFIR VPDRNPEECSTATDIAEMFNSQTRKMDVASG
Sbjct: 1362 GISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVASG 1404

[Close]

BLAST of HG10002727 vs. NCBI nr
Match: XP_008444062.1 (PREDICTED: DNA ligase 1 isoform X2 [Cucumis melo])

HSP 1 Score: 201.1 bits (510), Expect = 6.3e-48
Identity = 94/103 (91.26%), Postives = 99/103 (96.12%), Query Frame = 0


Query: 32   VQMKEFFSEDKIVCKKPAYYQTAEVPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSR 91
            ++MKEFFS DKI+CKKP YY+TAEVPDMWF+PQVVWEIRGADLTVSPVHQAAVGLVHP R
Sbjct: 1301 IEMKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVR 1360

Query: 92   GISIRFPRFIRLVPDRNPEECSTATDIAEMFNSQTRKMDVASG 135
            GISIRFPRFIR VPDRNPEECSTATDIAEMFNSQTRKMDVASG
Sbjct: 1361 GISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVASG 1403

[Close]

BLAST of HG10002727 vs. NCBI nr
Match: KAA0064112.1 (DNA ligase 1 isoform X2 [Cucumis melo var. makuwa] >TYK28627.1 DNA ligase 1 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 199.1 bits (505), Expect = 2.4e-47
Identity = 94/101 (93.07%), Postives = 97/101 (96.04%), Query Frame = 0


Query: 34  MKEFFSEDKIVCKKPAYYQTAEVPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGI 93
           MKEFFS DKI+CKKP YY+TAEVPDMWF+PQVVWEIRGADLTVSPVHQAAVGLVHP RGI
Sbjct: 1   MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGI 60

Query: 94  SIRFPRFIRLVPDRNPEECSTATDIAEMFNSQTRKMDVASG 135
           SIRFPRFIR VPDRNPEECSTATDIAEMFNSQTRKMDVASG
Sbjct: 61  SIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVASG 101

[Close]

BLAST of HG10002727 vs. NCBI nr
Match: XP_022158502.1 (DNA ligase 6-like isoform X2 [Momordica charantia])

HSP 1 Score: 189.9 bits (481), Expect = 1.4e-44
Identity = 91/105 (86.67%), Postives = 97/105 (92.38%), Query Frame = 0


Query: 32   VQMKEFFSEDKIVCKKPAYYQTAEVPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSR 91
            ++MKEFFS DKI+CKKP YY+TAE PDMWF+P+VVWEIRGADLTVSPVHQAAVGLVHPSR
Sbjct: 1322 IEMKEFFSGDKILCKKPPYYRTAEAPDMWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSR 1381

Query: 92   GISIRFPRFIRLVPDRNPEECSTATDIAEMFNSQTRKMD-VASGD 136
            GISIRFPRFIR V DRNPEECSTATDI  MFNSQTRKMD VASGD
Sbjct: 1382 GISIRFPRFIRSVRDRNPEECSTATDIVGMFNSQTRKMDVVASGD 1426

[Close]

BLAST of HG10002727 vs. ExPASy Swiss-Prot
Match: F4HPZ9 (DNA ligase 6 OS=Arabidopsis thaliana OX=3702 GN=LIG6 PE=2 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 5.3e-42
Identity = 77/102 (75.49%), Postives = 90/102 (88.24%), Query Frame = 0


Query: 32   VQMKEFFSEDKIVCKKPAYYQTAEVPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSR 91
            ++MKEF+SEDKI+ KKP YY+T E PDMWF  +VVWEIRGAD TVSPVH A++GLVHPSR
Sbjct: 1293 IEMKEFYSEDKILAKKPPYYRTGETPDMWFSAEVVWEIRGADFTVSPVHSASLGLVHPSR 1352

Query: 92   GISIRFPRFIRLVPDRNPEECSTATDIAEMFNSQTRKMDVAS 134
            GIS+RFPRFI  V DRNPEECSTATDIAEMF++QTRKM++ S
Sbjct: 1353 GISVRFPRFISKVTDRNPEECSTATDIAEMFHAQTRKMNITS 1394

[Close]

BLAST of HG10002727 vs. ExPASy Swiss-Prot
Match: Q42572 (DNA ligase 1 OS=Arabidopsis thaliana OX=3702 GN=LIG1 PE=2 SV=2)

HSP 1 Score: 93.6 bits (231), Expect = 1.8e-18
Identity = 38/86 (44.19%), Postives = 61/86 (70.93%), Query Frame = 0


Query: 42  KIVCKKPAYYQTAEV--PDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPR 101
           +++     YY+  +   PD+WF P  VWE++ ADLT+SPVH+AA G+V P +GIS+RFPR
Sbjct: 691 QVIATPKQYYRVGDSLNPDVWFEPTEVWEVKAADLTISPVHRAATGIVDPDKGISLRFPR 750

Query: 102 FIRLVPDRNPEECSTATDIAEMFNSQ 126
            +R+  D+ PEE +++  IA+++ +Q
Sbjct: 751 LLRVREDKKPEEATSSEQIADLYQAQ 776

[Close]

BLAST of HG10002727 vs. ExPASy Swiss-Prot
Match: P51892 (DNA ligase 1 OS=Xenopus laevis OX=8355 GN=lig1 PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.4e-18
Identity = 41/98 (41.84%), Postives = 67/98 (68.37%), Query Frame = 0


Query: 38   FSEDKIVCKKPAYYQ--TAEVPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGISI 97
            F +D ++    +YY+  +A  PD WF P  VWE++ ADL++SPVH+AA+GLV   +GIS+
Sbjct: 964  FLKDHVIENPRSYYRWDSATEPDHWFDPVQVWEVKCADLSISPVHKAALGLVEDQKGISL 1023

Query: 98   RFPRFIRLVPDRNPEECSTATDIAEMFNSQTRKMDVAS 134
            RFPRF+R+  D+ PEE + +  +A+++  Q +  + +S
Sbjct: 1024 RFPRFLRIRDDKKPEESTNSFQVADLYRKQQQIQNTSS 1061

[Close]

BLAST of HG10002727 vs. ExPASy Swiss-Prot
Match: Q869E1 (DNA ligase 1 OS=Dictyostelium discoideum OX=44689 GN=lig1 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.2e-17
Identity = 38/84 (45.24%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 57   PDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRLVPDRNPEECSTAT 116
            PD+WF P  VWE+  ADL++SPVH AA G++ P++GI++RFPRFIR+ PD++PE+ +++ 
Sbjct: 1108 PDVWFSPSCVWEVLAADLSISPVHTAASGILDPNKGIALRFPRFIRIRPDKSPEDATSSD 1167

Query: 117  DIAEMF-----NSQTRKMDVASGD 136
             + +M+     NSQ+ K++    D
Sbjct: 1168 QVVDMYQNQKINSQSSKINEKDED 1191

[Close]

BLAST of HG10002727 vs. ExPASy Swiss-Prot
Match: Q9W1H4 (DNA ligase 1 OS=Drosophila melanogaster OX=7227 GN=DNAlig1 PE=1 SV=2)

HSP 1 Score: 90.1 bits (222), Expect = 2.0e-17
Identity = 42/91 (46.15%), Postives = 58/91 (63.74%), Query Frame = 0


Query: 36  EFFSEDKIVCKKPAY-YQTAEVPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGIS 95
           EF  +      K  Y Y  +  PD WF P  VWE++ ADL++SP+H+AA+G+V   RGIS
Sbjct: 637 EFLGKHVTSAAKSYYRYDPSLEPDHWFEPVQVWEVKCADLSLSPIHRAAIGIVDGERGIS 696

Query: 96  IRFPRFIRLVPDRNPEECSTATDIAEMFNSQ 126
           +RFPRFIR+  D+N E  + A  +A M+ SQ
Sbjct: 697 LRFPRFIRIRDDKNSENATDANQVAHMYQSQ 727

[Close]

BLAST of HG10002727 vs. ExPASy TrEMBL
Match: A0A1S3B9K2 (DNA ligase OS=Cucumis melo OX=3656 GN=LOC103487505 PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 3.0e-48
Identity = 94/103 (91.26%), Postives = 99/103 (96.12%), Query Frame = 0


Query: 32   VQMKEFFSEDKIVCKKPAYYQTAEVPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSR 91
            ++MKEFFS DKI+CKKP YY+TAEVPDMWF+PQVVWEIRGADLTVSPVHQAAVGLVHP R
Sbjct: 1302 IEMKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVR 1361

Query: 92   GISIRFPRFIRLVPDRNPEECSTATDIAEMFNSQTRKMDVASG 135
            GISIRFPRFIR VPDRNPEECSTATDIAEMFNSQTRKMDVASG
Sbjct: 1362 GISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVASG 1404

[Close]

BLAST of HG10002727 vs. ExPASy TrEMBL
Match: A0A1S3BA94 (DNA ligase OS=Cucumis melo OX=3656 GN=LOC103487505 PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 3.0e-48
Identity = 94/103 (91.26%), Postives = 99/103 (96.12%), Query Frame = 0


Query: 32   VQMKEFFSEDKIVCKKPAYYQTAEVPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSR 91
            ++MKEFFS DKI+CKKP YY+TAEVPDMWF+PQVVWEIRGADLTVSPVHQAAVGLVHP R
Sbjct: 1301 IEMKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVR 1360

Query: 92   GISIRFPRFIRLVPDRNPEECSTATDIAEMFNSQTRKMDVASG 135
            GISIRFPRFIR VPDRNPEECSTATDIAEMFNSQTRKMDVASG
Sbjct: 1361 GISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVASG 1403

[Close]

BLAST of HG10002727 vs. ExPASy TrEMBL
Match: A0A5D3DXM0 (DNA ligase 1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2030G00490 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.2e-47
Identity = 94/101 (93.07%), Postives = 97/101 (96.04%), Query Frame = 0


Query: 34  MKEFFSEDKIVCKKPAYYQTAEVPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGI 93
           MKEFFS DKI+CKKP YY+TAEVPDMWF+PQVVWEIRGADLTVSPVHQAAVGLVHP RGI
Sbjct: 1   MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGI 60

Query: 94  SIRFPRFIRLVPDRNPEECSTATDIAEMFNSQTRKMDVASG 135
           SIRFPRFIR VPDRNPEECSTATDIAEMFNSQTRKMDVASG
Sbjct: 61  SIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVASG 101

[Close]

BLAST of HG10002727 vs. ExPASy TrEMBL
Match: A0A6J1DXE4 (DNA ligase OS=Momordica charantia OX=3673 GN=LOC111024977 PE=3 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 7.0e-45
Identity = 91/105 (86.67%), Postives = 97/105 (92.38%), Query Frame = 0


Query: 32   VQMKEFFSEDKIVCKKPAYYQTAEVPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSR 91
            ++MKEFFS DKI+CKKP YY+TAE PDMWF+P+VVWEIRGADLTVSPVHQAAVGLVHPSR
Sbjct: 1322 IEMKEFFSGDKILCKKPPYYRTAEAPDMWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSR 1381

Query: 92   GISIRFPRFIRLVPDRNPEECSTATDIAEMFNSQTRKMD-VASGD 136
            GISIRFPRFIR V DRNPEECSTATDI  MFNSQTRKMD VASGD
Sbjct: 1382 GISIRFPRFIRSVRDRNPEECSTATDIVGMFNSQTRKMDVVASGD 1426

[Close]

BLAST of HG10002727 vs. ExPASy TrEMBL
Match: A0A6J1E130 (DNA ligase OS=Momordica charantia OX=3673 GN=LOC111024977 PE=3 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 7.0e-45
Identity = 91/105 (86.67%), Postives = 97/105 (92.38%), Query Frame = 0


Query: 32   VQMKEFFSEDKIVCKKPAYYQTAEVPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSR 91
            ++MKEFFS DKI+CKKP YY+TAE PDMWF+P+VVWEIRGADLTVSPVHQAAVGLVHPSR
Sbjct: 1326 IEMKEFFSGDKILCKKPPYYRTAEAPDMWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSR 1385

Query: 92   GISIRFPRFIRLVPDRNPEECSTATDIAEMFNSQTRKMD-VASGD 136
            GISIRFPRFIR V DRNPEECSTATDI  MFNSQTRKMD VASGD
Sbjct: 1386 GISIRFPRFIRSVRDRNPEECSTATDIVGMFNSQTRKMDVVASGD 1430

[Close]

BLAST of HG10002727 vs. TAIR 10
Match: AT1G66730.1 (DNA LIGASE 6 )

HSP 1 Score: 171.8 bits (434), Expect = 3.8e-43
Identity = 77/102 (75.49%), Postives = 90/102 (88.24%), Query Frame = 0


Query: 32   VQMKEFFSEDKIVCKKPAYYQTAEVPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSR 91
            ++MKEF+SEDKI+ KKP YY+T E PDMWF  +VVWEIRGAD TVSPVH A++GLVHPSR
Sbjct: 1293 IEMKEFYSEDKILAKKPPYYRTGETPDMWFSAEVVWEIRGADFTVSPVHSASLGLVHPSR 1352

Query: 92   GISIRFPRFIRLVPDRNPEECSTATDIAEMFNSQTRKMDVAS 134
            GIS+RFPRFI  V DRNPEECSTATDIAEMF++QTRKM++ S
Sbjct: 1353 GISVRFPRFISKVTDRNPEECSTATDIAEMFHAQTRKMNITS 1394

[Close]

BLAST of HG10002727 vs. TAIR 10
Match: AT1G49250.1 (ATP-dependent DNA ligase )

HSP 1 Score: 96.7 bits (239), Expect = 1.6e-20
Identity = 42/86 (48.84%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 42  KIVCKKPAYYQTAE--VPDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPR 101
           K++     YYQ      PD+W  P  VWE++ ADLTVSPV++ A+G+V P +GIS+RFPR
Sbjct: 558 KVIATPKQYYQVDNDLNPDVWLEPTEVWEVKAADLTVSPVYREAIGIVDPDKGISLRFPR 617

Query: 102 FIRLVPDRNPEECSTATDIAEMFNSQ 126
            +R+  D+NPEE +T+  IAEM+ +Q
Sbjct: 618 LVRIRKDKNPEEATTSDQIAEMYQAQ 643

[Close]

BLAST of HG10002727 vs. TAIR 10
Match: AT1G08130.1 (DNA ligase 1 )

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-19
Identity = 38/86 (44.19%), Postives = 61/86 (70.93%), Query Frame = 0


Query: 42  KIVCKKPAYYQTAEV--PDMWFVPQVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPR 101
           +++     YY+  +   PD+WF P  VWE++ ADLT+SPVH+AA G+V P +GIS+RFPR
Sbjct: 691 QVIATPKQYYRVGDSLNPDVWFEPTEVWEVKAADLTISPVHRAATGIVDPDKGISLRFPR 750

Query: 102 FIRLVPDRNPEECSTATDIAEMFNSQ 126
            +R+  D+ PEE +++  IA+++ +Q
Sbjct: 751 LLRVREDKKPEEATSSEQIADLYQAQ 776

The following BLAST results are available for this feature:

BLAST of HG10002727 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878216.1	2.8e-48	91.35	DNA ligase 6-like isoform X1 [Benincasa hispida]	[more]
XP_008444061.1	6.3e-48	91.26	PREDICTED: DNA ligase 1 isoform X1 [Cucumis melo]	[more]
XP_008444062.1	6.3e-48	91.26	PREDICTED: DNA ligase 1 isoform X2 [Cucumis melo]	[more]
KAA0064112.1	2.4e-47	93.07	DNA ligase 1 isoform X2 [Cucumis melo var. makuwa] >TYK28627.1 DNA ligase 1 isof...	[more]
XP_022158502.1	1.4e-44	86.67	DNA ligase 6-like isoform X2 [Momordica charantia]	[more]

BLAST of HG10002727 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4HPZ9	5.3e-42	75.49	DNA ligase 6 OS=Arabidopsis thaliana OX=3702 GN=LIG6 PE=2 SV=1	[more]
Q42572	1.8e-18	44.19	DNA ligase 1 OS=Arabidopsis thaliana OX=3702 GN=LIG1 PE=2 SV=2	[more]
P51892	2.4e-18	41.84	DNA ligase 1 OS=Xenopus laevis OX=8355 GN=lig1 PE=2 SV=1	[more]
Q869E1	1.2e-17	45.24	DNA ligase 1 OS=Dictyostelium discoideum OX=44689 GN=lig1 PE=3 SV=1	[more]
Q9W1H4	2.0e-17	46.15	DNA ligase 1 OS=Drosophila melanogaster OX=7227 GN=DNAlig1 PE=1 SV=2	[more]

BLAST of HG10002727 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B9K2	3.0e-48	91.26	DNA ligase OS=Cucumis melo OX=3656 GN=LOC103487505 PE=3 SV=1	[more]
A0A1S3BA94	3.0e-48	91.26	DNA ligase OS=Cucumis melo OX=3656 GN=LOC103487505 PE=3 SV=1	[more]
A0A5D3DXM0	1.2e-47	93.07	DNA ligase 1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1DXE4	7.0e-45	86.67	DNA ligase OS=Momordica charantia OX=3673 GN=LOC111024977 PE=3 SV=1	[more]
A0A6J1E130	7.0e-45	86.67	DNA ligase OS=Momordica charantia OX=3673 GN=LOC111024977 PE=3 SV=1	[more]

BLAST of HG10002727 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G66730.1	3.8e-43	75.49	DNA LIGASE 6	[more]
AT1G49250.1	1.6e-20	48.84	ATP-dependent DNA ligase	[more]
AT1G08130.1	1.3e-19	44.19	DNA ligase 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 30..133 e-value: 1.4E-27 score: 98.6
None	No IPR available	PANTHER	PTHR45674:SF9	DNA LIGASE 3	coord: 33..131
None	No IPR available	PANTHER	PTHR45674	DNA LIGASE 1/3 FAMILY MEMBER	coord: 33..131
IPR012309	DNA ligase, ATP-dependent, C-terminal	PFAM	PF04679	DNA_ligase_A_C	coord: 45..106 e-value: 5.4E-9 score: 36.5
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 46..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10002727.1	HG10002727.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0006266	DNA ligation
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006281	DNA repair
biological_process	GO:0006260	DNA replication
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003910	DNA ligase (ATP) activity