HG10002680 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10002680
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
Location	Chr11: 9747887 .. 9752718 (-)
RNA-Seq Expression	HG10002680
Synteny	HG10002680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCCAAGATTCCAAAATCAGGCAGCGCATCTGTTGGCTCGTGAAGGTTCTCGGGTTTGAGTCTTTTAAAGCCCAATTCTTTTCTATTCGAGTTAACAAGTTTGTTCTTGCGTGTTTGTTGTTTTTTTGCGACAATAGCCCACTAGCTACTTGTTTTGGTTTGATTCTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCTAATCCTTTAAAAAGGAAGTGATAGATACAAATAAATATGGGCTCTTTTCAAATATAAAAAAATGAGTCAAACTATTTACAAATATAGAAAAATTTTACAGTCTATCACTGATAAATCGCGATAGAATTCTATTGCTTTTTATCGATCAGGCAATAGAATTTATTTGCTTGAGAGATAGATAGCGATAGAATTCTATCGCGGTCTTTCACTGATAGACAGTGCATTTTTTCTATATTTGTAAATAGTTTGATATTTTTTCTGTTTACAGTAATTTTTTAATAAATATTTTGAAAATTTTAAAAATAAGAAATAAATTTTTTTTGGTAAAAGAACTTATTAAGGCAATGTAATAAAGAGCCAAGAGACGATTGCATGTTATTGTACCCTACACGACTGACGACACACTCCCTACGCGCCAACGACATAATTCAACCACCACACAAACAACCTCTCCTTCCTCTGCCCCTTTCAAGGCCATCCCGCCCTTTCTTCGTCTCTCCAACCGCCGTCACTAACCCCCAACAATCCCCTTCCCTTTCTTTTTATTCTCCTTCCTTTCCCAGAAGAAATTTCACTGCTGTTTCCTCCTCCTCTTCTCTACCTTCCTTCCGTCTCAATTCCGCCGCTTCTCCCTCTGTGGCGTCCACTACCGCCGTCAAATCCGATTCTCCGTCCAAAACCTTGCCATTTCGGGTCGGACATGGCTTCGATCTTCATAGGTTGGAACCTGGGTACCCTTTGATTATTGGGGGAATTACCATTCCCCATGATAGAGGCTGCGAAGCTCATTCCGATGGTAATTTCTTTGGTTTCTCTTTTTCCTGTTTTTCTCCGTTGCTGTGCTGCTGATCAAATGGGGAAATTCGTACCTACTTTATTGTGCGTGTTTTAATTCTTTGAATAATTAGCTCAGTTTTGTTGTTGGCTAATCATCCCTTCAATCTAACATTGTATAGTGCTGTTTTAGGGTGTAAAATTGATTGCCCTACTGACGAGATCAGTACTTTTTTGCTTACTGAAAATTTTATGGACTAACTATGGAGAACTATATTTAAAAAGCCATGGGATGTTTTGTCCTAAATAGAACTTGGATATTACTGTTATTATTGCCTACTATTACTCTACTGATTTTGTACCTTTTGGACATTGGAGTGCTGAAGATAAGCTTATTTAAGCCCAGTTATCTGCAATTGATCTATTGAATGGAGCTCCCATCTCATCAAGCTTTTTAGAAGTCTCAACTTTGGTTTCTGTCTCTACAGTATAAAAGTTTCCTGCAACTCTTGTTAAATTTTGAAGTGTTTCTTTATTTTGTTGATTTAGGGGATGTTCTCCTACATTGTGTGGTTGATGCAATTTTGGGTGCTTTGGGGCTTCCTGATATTGGACAGATCTTTCCAGATTCAGATCCCAAATGGAAGGGTGCTCCATCGTCCGTTTTCATCAAAGAAGCTGTAAGTAGTTATGGCATAGCAAATTCATACACACTTACCAAAGTTTGTTATCTTTATATATGAATCGTGTCCTTTTTGACTTATTTAAAATGAGCCACATGGTGCGCTGTACGGATGATTTAGGATTCTATTGTTGCTTTCATACGAGATGTCATGAACTCATGACATATTTTATGCTTGGTTGTTGTTCTCTTTAAAGAGGCCCTCAATAGCATAGTGGATAAACCAAATCACATAACCCTTTCTCAGGTTTCTCAATTTTATTGGTTTCTTTAATACGTATGTGTTATGTCACATAAGAGTTTTATTATCTTTGTTTAATGAATTTTATGAGGGTCATTTCACATGTCGAGTTCTTACTCGGGACCGAAGTAGTGGTTGTGTCAAATTTTATGCATCTCAATGAATTGAGTATATTCAGCATTTTGTTTGTTGGCACGCTTTATGCTTATCTAACAACAGAATGTTCATTGTATCAGTGAAAGAAATGTCAAAGTCTACTAAGTGGACCTTAGATATAGTATTCTCTTTCTTATAATCAACTTCAATTATATTGCATGAACTGGAATAACCATACACTTGCTTCTTTGTTCAAACCCCTTTGTACCATTATACCATTTTATATTTCCTCTGTATAGCTTCATCTTCTAATTACCTAGAGAGAATAAGATTATGTAACAAGTCATACCTGCATGAAATGATATCGTTTCGGATGGGAATTTAAGAATGCATCTCCATAAAGAATGAAGAATCAGTTTATAACAATCTATTAACTCAGTTATATTAAATATCTTTCACTTGTATTAAGAAACAAAGACTCTTATTGAGACAAAGGAAGCGATGCCCAAACAGGGGAGCATAAGAAGCTCTCCAAAACCAAAAGGAACTGCAGAAAGGTTTTCCAATTCACGTGTATGATTGTATCAAAAGAGAAGAAAAGCTGCTAATCGTATATCTTGGGTTTCCCTTTTACCTCTCCCCTTCGAAAGTACATATGTTTCTTTGTACAACAATTCTCACCAAACATCATACACCAAAGGAATCCAAAGAAGCTTTGTCTTCCTGTAGAAACTTCACCCAACAACCCTTTGTTAAAAGAATCTTTGATATCATCTTGAGGACTTCATATCCAATTAAAACTATTGAAAGAAAAAGGAAATCATAAACATGAATGGGGCTCCTGAATTCCGGTCTGGGGAACCTCAGGAGACAGGAAGCATGATGTTGCTCCATTGTCTTATGAATTTCAAAATTCTCCAATGAGAATAAGGCTTGTTGAAGATTATTGCCACCAAACATGGATACGCTTTCACCTGCCATTTTAGGTGCCTGTTGGAGTGCAAGGTGCGCTACTTCGTTTTTTCTATCTTATGAAACATTTTAATGCTTCTTATAAGAATCTCATGTAATATTTAGATTGAGAGGAATTAAAAAAACTTTTAGAGGAGTTGTGAGTCATTCCAGAACTGTGGGCTGGCCGGTTCACCCTCATAAAATTTAAAGAGGATGCATGGATAACTAGTCTAACTTGTCTGGGATTTTTTTTTTTTTTTTTTTTTTTTTTCTATTCGGTAACTAAGCATTGATGGAGAGAGAAAAATAATTAAAGAATACAAGGACATACACAAATTTTAGTAGACAGACCGGTGCGACTCCAGTCTAACAAAATAAGCCAAATTAAATAAGTTAAATTGCAAAATCCTTGTACACTGAAAGCCCAAAGATGCGTGGAATCTAACAATGGACCAAACCCTCTTCTCAAGAAGTCTCTGACCTCCCAGCAAATGTCATAACAAAAATATACATAAAATTAGACAAGTTTTGAATTCGTATTAAAGCATATTCTGACCTCAGAGGTGGATGCTTCAACCAGTGTGTCCCTGCTTCCTAGATTATTCTCTTACTCTCAAATGCTTGGATAATTAACTGGATCCACTGGTGCTTTTTGCAAATGCTTAGAGAGTGTATGGAGCCAGTATTATATGGCCATGGTGTAACTTGTACAAATCATCGATTCATAAATTAAATACACGTTACATCAACTTAAGTTTTTCTACTTTAGGTTTCATAAATTCAGGCTCGTTAATCGTGAGCTAATTAACACAACTACCATAGTTTGGCCTAGTGGTCATTGGTCAATAAGGGACAATATAATTAATAAAGGATTTAGTAGGGATGGGTTCAAGTCATAATGACCATCTACATAGGAATTTGATGTCCTACAAGTTACCTTGGCAACTAAATGTAGTAGGGTCAAGTAACTATCCTAAAGAATTATTGAGGTAAGTGCAAGGTGGTGCAAAGACTGACGGATAAAAGAAATCATGAGACAAATGGTCTTGGAGAATCTAAGGGAAAGGTTAATCAATAGTGAGAAACCTTTGATTCATCTACACCATGCTTTGTAGTACTACAATATTTGTTAACTATCATTTAATTTAAAAGTTAAAGTTGATTGGTTATGGTAAAGTTCTCACGTTTTACTATAATATTTGTTAACTATCATTGAATTTAAAAGTTAAGTTGATTGGATATGGTAAAGTTCTCACGTTTTCTTAAATATCAACTCAAGGTCGAACACACGGGACAATTGTGTGAAATGAGAAGAGAATGACATTATAGGATAGGGGGTATGAACTTTGCAGCACTATATTTAATATTTAAAAAGTGATGGCTGATAGGTAGGTTAGGGTACATCTATCTTTTCAATATGTGGTTAGTCAACAAACCTAAGCCTTAAGGCTAAATCTGAATCCACATGTGAGGAGACAGTAGGCCTCTCCCACGAAAATCTGAGGCAAGTGAATCCAATTAGCTAGCCGAAGTCGAATTAAATAGTTCGAATTCAGTGCATTTTAGATAAAAGTTCCATTATCTGATTGGTGAGATGAAATCTTTGCTGTTGTTTTTGGTTGATTCCAGGTGAGACTGATGCATGAGGCAGGTTATGACATAGGCAACTTGGATGCCACATTGATACTTCAAAGACCAAAGCTTAGCCCTCACAAGGAAGCTATCAGAGCAAACCTCTCTGAGCTCCTGGGAGCCGACCCCTCTGTCGTGAATCTGAAGGCGAAAACGCATGAGAAAGTCGACAGCCTTGGCGAAAACAGAAGCATTGCTGCTCATACTGTGGTCCTCTTGATGAGCAGATAG

mRNA sequence

ATGTGCCAAGATTCCAAAATCAGGCAGCGCATCTGTTGGCTCGTGAAGGTTCTCGGGTTTGAGTCTTTTAAAGCCCAATTCTTTTCTATTCGAGTTAACAAAAGAAATTTCACTGCTGTTTCCTCCTCCTCTTCTCTACCTTCCTTCCGTCTCAATTCCGCCGCTTCTCCCTCTGTGGCGTCCACTACCGCCGTCAAATCCGATTCTCCGTCCAAAACCTTGCCATTTCGGGTCGGACATGGCTTCGATCTTCATAGGTTGGAACCTGGGTACCCTTTGATTATTGGGGGAATTACCATTCCCCATGATAGAGGCTGCGAAGCTCATTCCGATGGGGATGTTCTCCTACATTGTGTGGTTGATGCAATTTTGGGTGCTTTGGGGCTTCCTGATATTGGACAGATCTTTCCAGATTCAGATCCCAAATGGAAGGGTGCTCCATCGTCCGTTTTCATCAAAGAAGCTGTGAGACTGATGCATGAGGCAGGTTATGACATAGGCAACTTGGATGCCACATTGATACTTCAAAGACCAAAGCTTAGCCCTCACAAGGAAGCTATCAGAGCAAACCTCTCTGAGCTCCTGGGAGCCGACCCCTCTGTCGTGAATCTGAAGGCGAAAACGCATGAGAAAGTCGACAGCCTTGGCGAAAACAGAAGCATTGCTGCTCATACTGTGGTCCTCTTGATGAGCAGATAG

Coding sequence (CDS)

ATGTGCCAAGATTCCAAAATCAGGCAGCGCATCTGTTGGCTCGTGAAGGTTCTCGGGTTTGAGTCTTTTAAAGCCCAATTCTTTTCTATTCGAGTTAACAAAAGAAATTTCACTGCTGTTTCCTCCTCCTCTTCTCTACCTTCCTTCCGTCTCAATTCCGCCGCTTCTCCCTCTGTGGCGTCCACTACCGCCGTCAAATCCGATTCTCCGTCCAAAACCTTGCCATTTCGGGTCGGACATGGCTTCGATCTTCATAGGTTGGAACCTGGGTACCCTTTGATTATTGGGGGAATTACCATTCCCCATGATAGAGGCTGCGAAGCTCATTCCGATGGGGATGTTCTCCTACATTGTGTGGTTGATGCAATTTTGGGTGCTTTGGGGCTTCCTGATATTGGACAGATCTTTCCAGATTCAGATCCCAAATGGAAGGGTGCTCCATCGTCCGTTTTCATCAAAGAAGCTGTGAGACTGATGCATGAGGCAGGTTATGACATAGGCAACTTGGATGCCACATTGATACTTCAAAGACCAAAGCTTAGCCCTCACAAGGAAGCTATCAGAGCAAACCTCTCTGAGCTCCTGGGAGCCGACCCCTCTGTCGTGAATCTGAAGGCGAAAACGCATGAGAAAGTCGACAGCCTTGGCGAAAACAGAAGCATTGCTGCTCATACTGTGGTCCTCTTGATGAGCAGATAG

Protein sequence

MCQDSKIRQRICWLVKVLGFESFKAQFFSIRVNKRNFTAVSSSSSLPSFRLNSAASPSVASTTAVKSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGITIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYDIGNLDATLILQRPKLSPHKEAIRANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMSR

Homology

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BLAST of HG10002680 vs. NCBI nr
Match: XP_038877996.1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Benincasa hispida])

HSP 1 Score: 379.8 bits (974), Expect = 1.7e-101
Identity = 192/211 (91.00%), Postives = 198/211 (93.84%), Query Frame = 0


Query: 21  ESFKAQFFSIRVNKRNFTAV-SSSSSLPSFRLNSAASPSVASTTAVKSDSPSKTLPFRVG 80
           +S    F+     +RNFTAV SSSSSLPSFR+ SAASPSVA TTAVKSDSPSKTLPFRVG
Sbjct: 19  QSLSLSFYPPSFLRRNFTAVSSSSSSLPSFRVKSAASPSVAPTTAVKSDSPSKTLPFRVG 78

Query: 81  HGFDLHRLEPGYPLIIGGITIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDS 140
           HGFDLHRLEPGYPLIIGGI+IPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDS
Sbjct: 79  HGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDS 138

Query: 141 DPKWKGAPSSVFIKEAVRLMHEAGYDIGNLDATLILQRPKLSPHKEAIRANLSELLGADP 200
           DPKWKGAPSSVF+KEAVRLMHEAGYDIGNLDATLILQRPKLSPHKEAIRANLSELLG DP
Sbjct: 139 DPKWKGAPSSVFMKEAVRLMHEAGYDIGNLDATLILQRPKLSPHKEAIRANLSELLGVDP 198

Query: 201 SVVNLKAKTHEKVDSLGENRSIAAHTVVLLM 231
           SVVNLKAKTHEKVDSLGENRSIAAHTVVLLM
Sbjct: 199 SVVNLKAKTHEKVDSLGENRSIAAHTVVLLM 229

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BLAST of HG10002680 vs. NCBI nr
Match: XP_008452007.1 (PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Cucumis melo] >TYK16619.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Cucumis melo var. makuwa])

HSP 1 Score: 377.1 bits (967), Expect = 1.1e-100
Identity = 189/212 (89.15%), Postives = 198/212 (93.40%), Query Frame = 0


Query: 21  ESFKAQFFSIRVNKRNFTAVSSSSSLPSFRLNSAASPSVASTTAVKSDSPSKTLPFRVGH 80
           +S    F+     +R FT +SSSSSLPSFR+NSA S SV+STTA++SDSPSKTLPFRVGH
Sbjct: 19  QSPSLSFYPPSFPRRIFTPLSSSSSLPSFRVNSAVSHSVSSTTAIESDSPSKTLPFRVGH 78

Query: 81  GFDLHRLEPGYPLIIGGITIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSD 140
           GFDLHRLEPGYPLIIGGI+IPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSD
Sbjct: 79  GFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSD 138

Query: 141 PKWKGAPSSVFIKEAVRLMHEAGYDIGNLDATLILQRPKLSPHKEAIRANLSELLGADPS 200
           PKWKGAPSSVFIKEAVRLMHEAGYDIGNLDATLILQRPKLSPHKEAIRANLSELLGADPS
Sbjct: 139 PKWKGAPSSVFIKEAVRLMHEAGYDIGNLDATLILQRPKLSPHKEAIRANLSELLGADPS 198

Query: 201 VVNLKAKTHEKVDSLGENRSIAAHTVVLLMSR 233
           VVNLKAKTHEKVDSLGENRSIAAHTVVLLM R
Sbjct: 199 VVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 230

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BLAST of HG10002680 vs. NCBI nr
Match: XP_004146533.1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Cucumis sativus] >KGN53354.1 hypothetical protein Csa_014871 [Cucumis sativus])

HSP 1 Score: 368.6 bits (945), Expect = 3.9e-98
Identity = 184/195 (94.36%), Postives = 190/195 (97.44%), Query Frame = 0


Query: 38  TAVSSSSSLPSFRLNSAASPSVASTTAVKSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGG 97
           ++ SSSSSLPSFR+NSAAS SV+STTA+KSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGG
Sbjct: 39  SSFSSSSSLPSFRVNSAASHSVSSTTAIKSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGG 98

Query: 98  ITIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVR 157
           I+IPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGA SSVFIKEAVR
Sbjct: 99  ISIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVR 158

Query: 158 LMHEAGYDIGNLDATLILQRPKLSPHKEAIRANLSELLGADPSVVNLKAKTHEKVDSLGE 217
           LMHEAGYDIGNLDATLILQRPKLSPHKEAIRA LSELLGADPSVVNLKAKTHEKVDSLGE
Sbjct: 159 LMHEAGYDIGNLDATLILQRPKLSPHKEAIRAKLSELLGADPSVVNLKAKTHEKVDSLGE 218

Query: 218 NRSIAAHTVVLLMSR 233
           NRSIAAHTVVLLM R
Sbjct: 219 NRSIAAHTVVLLMRR 233

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BLAST of HG10002680 vs. NCBI nr
Match: KAG6600551.1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031190.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 357.1 bits (915), Expect = 1.2e-94
Identity = 181/205 (88.29%), Postives = 186/205 (90.73%), Query Frame = 0


Query: 34  KRNFTAVSSSSSLPSFRLNSAASPSVASTTAV------KSDSPSKTLPFRVGHGFDLHRL 93
           + NF  VSSSSS PS R+NSAASPSV + TAV       SDS SK LPFR+GHGFDLHRL
Sbjct: 32  RTNFNVVSSSSSRPSIRVNSAASPSVEAATAVDSDRAAASDSRSKALPFRIGHGFDLHRL 91

Query: 94  EPGYPLIIGGITIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAP 153
           EPGYPLIIGGI IPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAP
Sbjct: 92  EPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAP 151

Query: 154 SSVFIKEAVRLMHEAGYDIGNLDATLILQRPKLSPHKEAIRANLSELLGADPSVVNLKAK 213
           SSVFIKEAVRLMHEAGY+IGNLDATLILQRPKLSPHKEAIRANLS LLGADPSVVNLKAK
Sbjct: 152 SSVFIKEAVRLMHEAGYEIGNLDATLILQRPKLSPHKEAIRANLSNLLGADPSVVNLKAK 211

Query: 214 THEKVDSLGENRSIAAHTVVLLMSR 233
           THEKVDSLGENRSIAAHTVVLLM R
Sbjct: 212 THEKVDSLGENRSIAAHTVVLLMRR 236

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BLAST of HG10002680 vs. NCBI nr
Match: XP_023548820.1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 356.7 bits (914), Expect = 1.5e-94
Identity = 180/205 (87.80%), Postives = 187/205 (91.22%), Query Frame = 0


Query: 34  KRNFTAVSSSSSLPSFRLNSAASPSVASTTAV------KSDSPSKTLPFRVGHGFDLHRL 93
           + NF  VSSSSS PS R+NSAASPSV + TAV       SDS SK LPFR+GHGFDLHRL
Sbjct: 32  RTNFNVVSSSSSRPSIRVNSAASPSVEAATAVDSDRAAASDSRSKALPFRIGHGFDLHRL 91

Query: 94  EPGYPLIIGGITIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAP 153
           EPGYPLIIGGI IPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAP
Sbjct: 92  EPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAP 151

Query: 154 SSVFIKEAVRLMHEAGYDIGNLDATLILQRPKLSPHKEAIRANLSELLGADPSVVNLKAK 213
           SSVFIKEAVRLMH+AGY+IGNLDATLILQRPKLSPHKEAIRANLS+LLGADPSVVNLKAK
Sbjct: 152 SSVFIKEAVRLMHDAGYEIGNLDATLILQRPKLSPHKEAIRANLSDLLGADPSVVNLKAK 211

Query: 214 THEKVDSLGENRSIAAHTVVLLMSR 233
           THEKVDSLGENRSIAAHTVVLLM R
Sbjct: 212 THEKVDSLGENRSIAAHTVVLLMRR 236

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BLAST of HG10002680 vs. ExPASy Swiss-Prot
Match: Q9CAK8 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ISPF PE=1 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 1.1e-87
Identity = 157/180 (87.22%), Postives = 168/180 (93.33%), Query Frame = 0


Query: 53  SAASPSVASTTAVKSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGITIPHDRGCEAHSDG 112
           SAAS +V    +V S+ P+KTLPFR+GHGFDLHRLEPGYPLIIGGI IPHDRGCEAHSDG
Sbjct: 52  SAASSAVDVNESVTSEKPTKTLPFRIGHGFDLHRLEPGYPLIIGGIVIPHDRGCEAHSDG 111

Query: 113 DVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYDIGNLDAT 172
           DVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGA SSVFIKEAVRLM EAGY+IGNLDAT
Sbjct: 112 DVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMDEAGYEIGNLDAT 171

Query: 173 LILQRPKLSPHKEAIRANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMSR 232
           LILQRPK+SPHKE IR+NLS+LLGADPSVVNLKAKTHEKVDSLGENRSIAAHTV+LLM +
Sbjct: 172 LILQRPKISPHKETIRSNLSKLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVILLMKK 231

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BLAST of HG10002680 vs. ExPASy Swiss-Prot
Match: Q9M4W3 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Catharanthus roseus OX=4058 GN=ISPF PE=2 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 4.3e-84
Identity = 162/216 (75.00%), Postives = 177/216 (81.94%), Query Frame = 0


Query: 33  NKRNF--TAVSSSSSLPSF--------RLNSAASPSVASTTAVKSD------SPSKTLPF 92
           N+ NF  + V  S + PS+        R  S    + AS  AV+++      +PSK L F
Sbjct: 21  NRENFLCSPVGGSKTTPSYIRLSTRQSRTLSLVVSAAASGAAVEAEPKFAAVTPSKILSF 80

Query: 93  RVGHGFDLHRLEPGYPLIIGGITIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIF 152
           RVGHGFDLHRLEPGYPLIIGGI IPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIF
Sbjct: 81  RVGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIF 140

Query: 153 PDSDPKWKGAPSSVFIKEAVRLMHEAGYDIGNLDATLILQRPKLSPHKEAIRANLSELLG 212
           PD+DPKWKGAPSSVFIKEAVRLM EAGY++GNLDATLILQRPK+SPHKEAIR NL +LLG
Sbjct: 141 PDTDPKWKGAPSSVFIKEAVRLMDEAGYELGNLDATLILQRPKVSPHKEAIRQNLCQLLG 200

Query: 213 ADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMSR 233
           ADP VVNLKAKTHEKVDSLGENRSIAAHTVVLLM +
Sbjct: 201 ADPCVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRK 236

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BLAST of HG10002680 vs. ExPASy Swiss-Prot
Match: Q6EPN6 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=ISPF PE=1 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 2.2e-80
Identity = 150/197 (76.14%), Postives = 167/197 (84.77%), Query Frame = 0


Query: 41  SSSSSLPSFRLN-----SAASPSVASTTAVKSDSPSKTLPFRVGHGFDLHRLEPGYPLII 100
           S+S + PS RL      +AA+       AV +      LPFRVGHGFDLHRLEPG PLII
Sbjct: 26  SASPARPSLRLRRPSTLAAAAVQAEHQPAVAAAPKPPALPFRVGHGFDLHRLEPGLPLII 85

Query: 101 GGITIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEA 160
           GGI IPHDRGC+AHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDP+WKGA SSVF++EA
Sbjct: 86  GGIDIPHDRGCDAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPRWKGADSSVFMREA 145

Query: 161 VRLMHEAGYDIGNLDATLILQRPKLSPHKEAIRANLSELLGADPSVVNLKAKTHEKVDSL 220
           V+LMHEAGY++GNLDATLILQ+PK+SP KE IR+NL +LLGADPSVVNLKAKTHEKVDSL
Sbjct: 146 VKLMHEAGYELGNLDATLILQKPKISPFKETIRSNLCDLLGADPSVVNLKAKTHEKVDSL 205

Query: 221 GENRSIAAHTVVLLMSR 233
           GENRSIAAHTVVLLM +
Sbjct: 206 GENRSIAAHTVVLLMRK 222

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BLAST of HG10002680 vs. ExPASy Swiss-Prot
Match: B8GQ78 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thioalkalivibrio sulfidiphilus (strain HL-EbGR7) OX=396588 GN=ispF PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 6.4e-43
Identity = 79/155 (50.97%), Postives = 109/155 (70.32%), Query Frame = 0


Query: 77  RVGHGFDLHRLEPGYPLIIGGITIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIF 136
           R+GHG+D+H  + G  +++GG+ IPH +   AHSDGDVL+H + DA+LGA  L DIG+ F
Sbjct: 5   RIGHGYDVHAFKAGGHVVLGGVRIPHAKAFAAHSDGDVLIHALCDALLGAAALGDIGRHF 64

Query: 137 PDSDPKWKGAPSSVFIKEAVRLMHEAGYDIGNLDATLILQRPKLSPHKEAIRANLSELLG 196
           PD+DP +KGA S V ++  V L+HE GY +GN+DAT+I Q PK++PH EA+RANL++ LG
Sbjct: 65  PDTDPAYKGADSRVLLRRVVELLHEQGYRVGNVDATIIAQAPKMAPHIEAMRANLADDLG 124

Query: 197 ADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMS 232
                VN+KA T E++   G    IAAH V L+ S
Sbjct: 125 VALECVNVKATTTERLGFAGREEGIAAHAVALIES 159

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BLAST of HG10002680 vs. ExPASy Swiss-Prot
Match: Q1LLZ4 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 / CH34) OX=266264 GN=ispF PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 8.3e-43
Identity = 83/156 (53.21%), Postives = 108/156 (69.23%), Query Frame = 0


Query: 77  RVGHGFDLHRLEPGYPLIIGGITIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIF 136
           R+G G+D+H L PG  LI+GG+ IPHDRG   HSD D LLH V DA+ GA  L DIG+ F
Sbjct: 7   RIGQGYDVHALVPGRKLILGGVDIPHDRGLLGHSDADALLHAVTDALFGAAALGDIGRHF 66

Query: 137 PDSDPKWKGAPSSVFIKEAVRLMHEAGYDIGNLDATLILQRPKLSPHKEAIRANLSELLG 196
           PD+DP + GA S V ++EAVR + EAGY+IGN+DAT+I Q+PKL+PH   + ANL+E LG
Sbjct: 67  PDTDPNFAGADSRVLLREAVRRVREAGYEIGNVDATVIAQKPKLAPHISGMVANLAEDLG 126

Query: 197 ADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMSR 233
              +  N+KAKT+EK+   G+   I A   VL+  R
Sbjct: 127 LPVTRCNVKAKTNEKLGFEGKEEGIVAQAAVLIYRR 162

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BLAST of HG10002680 vs. ExPASy TrEMBL
Match: A0A5D3D287 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004470 PE=3 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 5.3e-101
Identity = 189/212 (89.15%), Postives = 198/212 (93.40%), Query Frame = 0


Query: 21  ESFKAQFFSIRVNKRNFTAVSSSSSLPSFRLNSAASPSVASTTAVKSDSPSKTLPFRVGH 80
           +S    F+     +R FT +SSSSSLPSFR+NSA S SV+STTA++SDSPSKTLPFRVGH
Sbjct: 19  QSPSLSFYPPSFPRRIFTPLSSSSSLPSFRVNSAVSHSVSSTTAIESDSPSKTLPFRVGH 78

Query: 81  GFDLHRLEPGYPLIIGGITIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSD 140
           GFDLHRLEPGYPLIIGGI+IPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSD
Sbjct: 79  GFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSD 138

Query: 141 PKWKGAPSSVFIKEAVRLMHEAGYDIGNLDATLILQRPKLSPHKEAIRANLSELLGADPS 200
           PKWKGAPSSVFIKEAVRLMHEAGYDIGNLDATLILQRPKLSPHKEAIRANLSELLGADPS
Sbjct: 139 PKWKGAPSSVFIKEAVRLMHEAGYDIGNLDATLILQRPKLSPHKEAIRANLSELLGADPS 198

Query: 201 VVNLKAKTHEKVDSLGENRSIAAHTVVLLMSR 233
           VVNLKAKTHEKVDSLGENRSIAAHTVVLLM R
Sbjct: 199 VVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 230

[Close]

BLAST of HG10002680 vs. ExPASy TrEMBL
Match: A0A1S3BTZ8 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cucumis melo OX=3656 GN=LOC103493142 PE=3 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 5.3e-101
Identity = 189/212 (89.15%), Postives = 198/212 (93.40%), Query Frame = 0


Query: 21  ESFKAQFFSIRVNKRNFTAVSSSSSLPSFRLNSAASPSVASTTAVKSDSPSKTLPFRVGH 80
           +S    F+     +R FT +SSSSSLPSFR+NSA S SV+STTA++SDSPSKTLPFRVGH
Sbjct: 19  QSPSLSFYPPSFPRRIFTPLSSSSSLPSFRVNSAVSHSVSSTTAIESDSPSKTLPFRVGH 78

Query: 81  GFDLHRLEPGYPLIIGGITIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSD 140
           GFDLHRLEPGYPLIIGGI+IPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSD
Sbjct: 79  GFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSD 138

Query: 141 PKWKGAPSSVFIKEAVRLMHEAGYDIGNLDATLILQRPKLSPHKEAIRANLSELLGADPS 200
           PKWKGAPSSVFIKEAVRLMHEAGYDIGNLDATLILQRPKLSPHKEAIRANLSELLGADPS
Sbjct: 139 PKWKGAPSSVFIKEAVRLMHEAGYDIGNLDATLILQRPKLSPHKEAIRANLSELLGADPS 198

Query: 201 VVNLKAKTHEKVDSLGENRSIAAHTVVLLMSR 233
           VVNLKAKTHEKVDSLGENRSIAAHTVVLLM R
Sbjct: 199 VVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 230

[Close]

BLAST of HG10002680 vs. ExPASy TrEMBL
Match: A0A0A0KWV1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cucumis sativus OX=3659 GN=Csa_4G049620 PE=3 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 1.9e-98
Identity = 184/195 (94.36%), Postives = 190/195 (97.44%), Query Frame = 0


Query: 38  TAVSSSSSLPSFRLNSAASPSVASTTAVKSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGG 97
           ++ SSSSSLPSFR+NSAAS SV+STTA+KSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGG
Sbjct: 39  SSFSSSSSLPSFRVNSAASHSVSSTTAIKSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGG 98

Query: 98  ITIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVR 157
           I+IPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGA SSVFIKEAVR
Sbjct: 99  ISIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVR 158

Query: 158 LMHEAGYDIGNLDATLILQRPKLSPHKEAIRANLSELLGADPSVVNLKAKTHEKVDSLGE 217
           LMHEAGYDIGNLDATLILQRPKLSPHKEAIRA LSELLGADPSVVNLKAKTHEKVDSLGE
Sbjct: 159 LMHEAGYDIGNLDATLILQRPKLSPHKEAIRAKLSELLGADPSVVNLKAKTHEKVDSLGE 218

Query: 218 NRSIAAHTVVLLMSR 233
           NRSIAAHTVVLLM R
Sbjct: 219 NRSIAAHTVVLLMRR 233

[Close]

BLAST of HG10002680 vs. ExPASy TrEMBL
Match: A0A6J1FX89 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cucurbita moschata OX=3662 GN=LOC111447862 PE=3 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 2.8e-94
Identity = 180/205 (87.80%), Postives = 186/205 (90.73%), Query Frame = 0


Query: 34  KRNFTAVSSSSSLPSFRLNSAASPSVASTTAV------KSDSPSKTLPFRVGHGFDLHRL 93
           + NF  VSSSSS PS R+NSAASPSV + TAV       SDS SK LPFR+GHGFDLHRL
Sbjct: 32  RTNFNVVSSSSSRPSIRVNSAASPSVEAATAVDSDRAAASDSRSKALPFRIGHGFDLHRL 91

Query: 94  EPGYPLIIGGITIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAP 153
           EPGYPLIIGGI IPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAP
Sbjct: 92  EPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAP 151

Query: 154 SSVFIKEAVRLMHEAGYDIGNLDATLILQRPKLSPHKEAIRANLSELLGADPSVVNLKAK 213
           SSVFIKEAVRLMHEAGY+IGNLDATLILQRPKLSPHKEAIRANLS+LLGAD SVVNLKAK
Sbjct: 152 SSVFIKEAVRLMHEAGYEIGNLDATLILQRPKLSPHKEAIRANLSDLLGADQSVVNLKAK 211

Query: 214 THEKVDSLGENRSIAAHTVVLLMSR 233
           THEKVDSLGENRSIAAHTVVLLM R
Sbjct: 212 THEKVDSLGENRSIAAHTVVLLMRR 236

[Close]

BLAST of HG10002680 vs. ExPASy TrEMBL
Match: A0A6J1J2X8 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cucurbita maxima OX=3661 GN=LOC111481338 PE=3 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 6.3e-94
Identity = 180/205 (87.80%), Postives = 185/205 (90.24%), Query Frame = 0


Query: 34  KRNFTAVSSSSSLPSFRLNSAASPSVASTTAV------KSDSPSKTLPFRVGHGFDLHRL 93
           + NF  VSSSSS PS R+NSAASPSV + TAV       SDS SK LPFR+GHGFDLHRL
Sbjct: 32  RTNFNVVSSSSSRPSIRVNSAASPSVDAATAVDSDRAAASDSRSKALPFRIGHGFDLHRL 91

Query: 94  EPGYPLIIGGITIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAP 153
           EPGYPLIIGGI IPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAP
Sbjct: 92  EPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAP 151

Query: 154 SSVFIKEAVRLMHEAGYDIGNLDATLILQRPKLSPHKEAIRANLSELLGADPSVVNLKAK 213
           SSVFIKEAVRLMHEAGY+IGNLDATLILQRPKLSPHKEAIRANLS LLGAD SVVNLKAK
Sbjct: 152 SSVFIKEAVRLMHEAGYEIGNLDATLILQRPKLSPHKEAIRANLSNLLGADQSVVNLKAK 211

Query: 214 THEKVDSLGENRSIAAHTVVLLMSR 233
           THEKVDSLGENRSIAAHTVVLLM R
Sbjct: 212 THEKVDSLGENRSIAAHTVVLLMRR 236

[Close]

BLAST of HG10002680 vs. TAIR 10
Match: AT1G63970.1 (isoprenoid F )

HSP 1 Score: 324.3 bits (830), Expect = 7.9e-89
Identity = 157/180 (87.22%), Postives = 168/180 (93.33%), Query Frame = 0


Query: 53  SAASPSVASTTAVKSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGITIPHDRGCEAHSDG 112
           SAAS +V    +V S+ P+KTLPFR+GHGFDLHRLEPGYPLIIGGI IPHDRGCEAHSDG
Sbjct: 52  SAASSAVDVNESVTSEKPTKTLPFRIGHGFDLHRLEPGYPLIIGGIVIPHDRGCEAHSDG 111

Query: 113 DVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYDIGNLDAT 172
           DVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGA SSVFIKEAVRLM EAGY+IGNLDAT
Sbjct: 112 DVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMDEAGYEIGNLDAT 171

Query: 173 LILQRPKLSPHKEAIRANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMSR 232
           LILQRPK+SPHKE IR+NLS+LLGADPSVVNLKAKTHEKVDSLGENRSIAAHTV+LLM +
Sbjct: 172 LILQRPKISPHKETIRSNLSKLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVILLMKK 231

[Close]

BLAST of HG10002680 vs. TAIR 10
Match: AT1G63970.2 (isoprenoid F )

HSP 1 Score: 299.7 bits (766), Expect = 2.1e-81
Identity = 149/180 (82.78%), Postives = 160/180 (88.89%), Query Frame = 0


Query: 53  SAASPSVASTTAVKSDSPSKTLPFRVGHGFDLHRLEPGYPLIIGGITIPHDRGCEAHSDG 112
           SAAS +V    +V S+ P+KTLPFR+GHGFDLHRLEPGYPLIIGGI IPHDRGCEAHSD 
Sbjct: 52  SAASSAVDVNESVTSEKPTKTLPFRIGHGFDLHRLEPGYPLIIGGIVIPHDRGCEAHSD- 111

Query: 113 DVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYDIGNLDAT 172
                  VDAILGALGLPDIGQIFPDSDPKWKGA SSVFIKEAVRLM EAGY+IGNLDAT
Sbjct: 112 -------VDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMDEAGYEIGNLDAT 171

Query: 173 LILQRPKLSPHKEAIRANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMSR 232
           LILQRPK+SPHKE IR+NLS+LLGADPSVVNLKAKTHEKVDSLGENRSIAAHTV+LLM +
Sbjct: 172 LILQRPKISPHKETIRSNLSKLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVILLMKK 223

The following BLAST results are available for this feature:

BLAST of HG10002680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877996.1	1.7e-101	91.00	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Benincasa ...	[more]
XP_008452007.1	1.1e-100	89.15	PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic ...	[more]
XP_004146533.1	3.9e-98	94.36	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Cucumis sa...	[more]
KAG6600551.1	1.2e-94	88.29	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic, partial [C...	[more]
XP_023548820.1	1.5e-94	87.80	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic-like [Cucur...	[more]

BLAST of HG10002680 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CAK8	1.1e-87	87.22	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Arabidop...	[more]
Q9M4W3	4.3e-84	75.00	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Catharan...	[more]
Q6EPN6	2.2e-80	76.14	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Oryza sa...	[more]
B8GQ78	6.4e-43	50.97	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thioalkalivibrio sulfid...	[more]
Q1LLZ4	8.3e-43	53.21	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cupriavidus metallidura...	[more]

BLAST of HG10002680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D287	5.3e-101	89.15	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cucumis melo var. makuw...	[more]
A0A1S3BTZ8	5.3e-101	89.15	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cucumis melo OX=3656 GN...	[more]
A0A0A0KWV1	1.9e-98	94.36	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cucumis sativus OX=3659...	[more]
A0A6J1FX89	2.8e-94	87.80	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cucurbita moschata OX=3...	[more]
A0A6J1J2X8	6.3e-94	87.80	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cucurbita maxima OX=366...	[more]

BLAST of HG10002680 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G63970.1	7.9e-89	87.22	isoprenoid F	[more]
AT1G63970.2	2.1e-81	82.78	isoprenoid F	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003526	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	TIGRFAM	TIGR00151	TIGR00151	coord: 77..230 e-value: 1.5E-59 score: 198.5
IPR003526	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	PFAM	PF02542	YgbB	coord: 76..229 e-value: 1.2E-58 score: 197.8
IPR003526	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	PANTHER	PTHR43181	2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, CHLOROPLASTIC	coord: 24..231
IPR003526	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	HAMAP	MF_00107	IspF	coord: 76..231 score: 32.947037
IPR003526	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	CDD	cd00554	MECDP_synthase	coord: 77..229 e-value: 1.27303E-89 score: 258.914
IPR036571	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily	GENE3D	3.30.1330.50		coord: 73..231 e-value: 4.5E-68 score: 230.2
IPR036571	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily	SUPERFAMILY	69765	IpsF-like	coord: 75..230
None	No IPR available	PANTHER	PTHR43181:SF2	2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE	coord: 24..231
IPR020555	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site	PROSITE	PS01350	ISPF	coord: 110..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10002680.1	HG10002680.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016117	carotenoid biosynthetic process
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0016114	terpenoid biosynthetic process
molecular_function	GO:0008685	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
molecular_function	GO:0046872	metal ion binding