HG10002675 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10002675
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	40S ribosomal protein S10-1-like
Location	Chr11: 9662976 .. 9664494 (-)
RNA-Seq Expression	HG10002675
Synteny	HG10002675

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCCAGAGGGGGTTTGCTATGCCAAGAAGGACTACAATTTGGCCAAGCACCCAGAAATCGATGTGCCTAATTTGCAGGTTATTAAGCTGATGCAGAGCTTCAAGTCCAAGGAATATGTGCGCGAGACATTTGCTTGGATGCATTACTACTGGTACCTCACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCTACCTTGAAGAAACAAGCCAAGCCCGCTGGTAGGCCCTTTGGCGGACCACCCGGCGATCGCCCACGGTATAAATTATATCTATAGCGCCAATCAATTTATTAGGATTTGTTGCTTATTCATCTGTGCTCTTGAGCTACGGAGGATTCTGTTTTTACAGTCTAGATTTAAAGATGGATGTGTATTTATAATGTATGATATGATAGTAAAATGTAAGGGCAAGGGCATATTTGAGTAGCTATTTGTGTAATTTGCATCTGTTTTGTAATTTGCATCTGTTTTGTTATTTAGTAAGTTGTATCTATTCTTGTTAGCATTCTTATTGAGTTGTGGTGACTCTTATGAATCAGGGGTCCACCTCGTTTTGAGGGCGGTGAGAGAAGGTTCGGTGACCGTGATGGCTACCGTGGAGGTCCTCGTGGACCTGGTGGTGAATTTGGTGGTGACAAGGGAGGAGCTCCTGCAGATTACAGGCCTTCATTTGGGGTAATTTTTATATAATCGTCATAGTGCTATCTGTAATATGGTTGATGCTCTCTACATAAAAATGCTGCTTTTTACTGCTTTTGTTCTGGGAACGTTATAAAAAGCAATACAATCGCTGTTCATGTATCTAACTAGAATTTTATTAAGTTAACGGACTTGTGCAGTGAGATGGTGAAAGGTTTTGAGATTCTTAAGTGATTCATTCATGAGTCAATTGGATGACATCTTATACTTATAGATTACTCTCTTCATCTGTTGAAGCTTTCCTCCAAAAGTGCTTCCTAATCAGTTTGTCTGCTCTGCTAGTAACTTAGTTAAAATGTTTAGTAGTAGTTTTTTTTTTGGGCATCGTGCCATGGTCTGTTCACTTTCAATATAATGATTTTCTAGGGCCCAAGTGATTACTGATTTCAACGTGATTTAAACCATTCACTATTTAGGTATTAGGTGAACATGAAGGGTAGTGGCATAATAGAAAAATGGGTAGCGGAAATATTAGAAATGTTATAAGAACTGGAATTCTTGAGTCCCATGATACGCCATCCTTGTGCACAATGACATTCTGATTACGGTATTTTATGGTTGGTGCTGAAGTTATTTTGAATGAATTTGAAATTTATGATAGTCATATATGTGTGATCTCGATAAAAGAAGTTTGTGATAGTCTTTTGATGGTTGTTTCTCGAGTGTTTTATTGATTGTTGTTGTGTCATACCTAAAAAATTTTCAGGGTCCTGGTGGAAGGCCAGGTTTTGGCCGTGGAGCTGGTAGCTATGGCGGAGGAGCTGCAGCAAGCTCAAACCTTCCTTGA

mRNA sequence

ATGATTCCAGAGGGGGTTTGCTATGCCAAGAAGGACTACAATTTGGCCAAGCACCCAGAAATCGATGTGCCTAATTTGCAGGTTATTAAGCTGATGCAGAGCTTCAAGTCCAAGGAATATGTGCGCGAGACATTTGCTTGGATGCATTACTACTGGTACCTCACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCTACCTTGAAGAAACAAGCCAAGCCCGCTGGTAGGCCCTTTGGCGGACCACCCGGCGATCGCCCACGGGGTCCACCTCGTTTTGAGGGCGGTGAGAGAAGGTTCGGTGACCGTGATGGCTACCGTGGAGGTCCTCGTGGACCTGGTGGTGAATTTGGTGGTGACAAGGGAGGAGCTCCTGCAGATTACAGGCCTTCATTTGGGGGTCCTGGTGGAAGGCCAGGTTTTGGCCGTGGAGCTGGTAGCTATGGCGGAGGAGCTGCAGCAAGCTCAAACCTTCCTTGA

Coding sequence (CDS)

ATGATTCCAGAGGGGGTTTGCTATGCCAAGAAGGACTACAATTTGGCCAAGCACCCAGAAATCGATGTGCCTAATTTGCAGGTTATTAAGCTGATGCAGAGCTTCAAGTCCAAGGAATATGTGCGCGAGACATTTGCTTGGATGCATTACTACTGGTACCTCACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCTACCTTGAAGAAACAAGCCAAGCCCGCTGGTAGGCCCTTTGGCGGACCACCCGGCGATCGCCCACGGGGTCCACCTCGTTTTGAGGGCGGTGAGAGAAGGTTCGGTGACCGTGATGGCTACCGTGGAGGTCCTCGTGGACCTGGTGGTGAATTTGGTGGTGACAAGGGAGGAGCTCCTGCAGATTACAGGCCTTCATTTGGGGGTCCTGGTGGAAGGCCAGGTTTTGGCCGTGGAGCTGGTAGCTATGGCGGAGGAGCTGCAGCAAGCTCAAACCTTCCTTGA

Protein sequence

MIPEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGERRFGDRDGYRGGPRGPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAAASSNLP

Homology

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BLAST of HG10002675 vs. NCBI nr
Match: XP_004146529.1 (40S ribosomal protein S10-1 [Cucumis sativus] >KGN53350.1 hypothetical protein Csa_014962 [Cucumis sativus])

HSP 1 Score: 331.6 bits (849), Expect = 3.8e-87
Identity = 164/168 (97.62%), Postives = 165/168 (98.21%), Query Frame = 0


Query: 1   MIPEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIE 60
           +  EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIE
Sbjct: 15  LFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIE 74

Query: 61  FLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGERRFGDRDGYRGGPR 120
           FLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGERRFGDRDGYRGGPR
Sbjct: 75  FLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGERRFGDRDGYRGGPR 134

Query: 121 GPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAAASSNLP 169
           GPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAA SSNLP
Sbjct: 135 GPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAAPSSNLP 182

[Close]

BLAST of HG10002675 vs. NCBI nr
Match: KAA0044841.1 (40S ribosomal protein S10-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 331.6 bits (849), Expect = 3.8e-87
Identity = 164/168 (97.62%), Postives = 165/168 (98.21%), Query Frame = 0


Query: 1   MIPEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIE 60
           +  EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIE
Sbjct: 28  LFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIE 87

Query: 61  FLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGERRFGDRDGYRGGPR 120
           FLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGERRFGDRDGYRGGPR
Sbjct: 88  FLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGERRFGDRDGYRGGPR 147

Query: 121 GPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAAASSNLP 169
           GPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAA SSNLP
Sbjct: 148 GPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAAPSSNLP 195

[Close]

BLAST of HG10002675 vs. NCBI nr
Match: XP_022985005.1 (40S ribosomal protein S10-1-like [Cucurbita maxima] >XP_022985006.1 40S ribosomal protein S10-1-like [Cucurbita maxima])

HSP 1 Score: 331.3 bits (848), Expect = 5.0e-87
Identity = 164/168 (97.62%), Postives = 165/168 (98.21%), Query Frame = 0


Query: 1   MIPEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIE 60
           +  EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIE
Sbjct: 15  LFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIE 74

Query: 61  FLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGERRFGDRDGYRGGPR 120
           FLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGERRFGDRDGYRGGPR
Sbjct: 75  FLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGERRFGDRDGYRGGPR 134

Query: 121 GPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAAASSNLP 169
           GP GEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAAASSNLP
Sbjct: 135 GPAGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAAASSNLP 182

[Close]

BLAST of HG10002675 vs. NCBI nr
Match: TYK16623.1 (40S ribosomal protein S10-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 330.1 bits (845), Expect = 1.1e-86
Identity = 163/168 (97.02%), Postives = 164/168 (97.62%), Query Frame = 0


Query: 1   MIPEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIE 60
           +  EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIE
Sbjct: 38  LFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIE 97

Query: 61  FLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGERRFGDRDGYRGGPR 120
           FLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGERRFGDRDGYRGGPR
Sbjct: 98  FLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGERRFGDRDGYRGGPR 157

Query: 121 GPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAAASSNLP 169
           GPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAG YGGGAA SSNLP
Sbjct: 158 GPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGGAAPSSNLP 205

[Close]

BLAST of HG10002675 vs. NCBI nr
Match: XP_008452010.1 (PREDICTED: 40S ribosomal protein S10-1-like [Cucumis melo])

HSP 1 Score: 330.1 bits (845), Expect = 1.1e-86
Identity = 163/168 (97.02%), Postives = 164/168 (97.62%), Query Frame = 0


Query: 1   MIPEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIE 60
           +  EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIE
Sbjct: 15  LFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIE 74

Query: 61  FLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGERRFGDRDGYRGGPR 120
           FLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGERRFGDRDGYRGGPR
Sbjct: 75  FLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGERRFGDRDGYRGGPR 134

Query: 121 GPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAAASSNLP 169
           GPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAG YGGGAA SSNLP
Sbjct: 135 GPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGGAAPSSNLP 182

[Close]

BLAST of HG10002675 vs. ExPASy Swiss-Prot
Match: P0DKK8 (40S ribosomal protein S10-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS10-1 PE=2 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 2.1e-67
Identity = 132/167 (79.04%), Postives = 144/167 (86.23%), Query Frame = 0


Query: 1   MIPEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIE 60
           +  EGV YAKKDYNLAKHP+IDVPNLQVIKLMQSFKSKEYVRETF+W +YYWYLTNDGIE
Sbjct: 15  LFQEGVLYAKKDYNLAKHPQIDVPNLQVIKLMQSFKSKEYVRETFSWQYYYWYLTNDGIE 74

Query: 61  FLRTYLNLPSEIVPATLKKQAKPAGRPFG-GPPGDRPRGPPRFEGGERRFGDRDGYRGGP 120
            LR YLNLPSEIVPATLKK A+P GRPFG GPPGDRPRGPPRFEG   RFGDRDGYRGGP
Sbjct: 75  HLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEGDRPRFGDRDGYRGGP 134

Query: 121 RGPGGEFGGDKGGAPADYRPSFGGPGGRPGFGR-GAGSYGGGAAASS 166
           RG  G+FGG+KGGAPA+++PSF   GGRPGFGR G G +G G  +SS
Sbjct: 135 RGAPGDFGGEKGGAPAEFQPSFRSSGGRPGFGRGGGGGFGAGPTSSS 181

[Close]

BLAST of HG10002675 vs. ExPASy Swiss-Prot
Match: P0DKK9 (40S ribosomal protein S10-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS10-2 PE=2 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 2.1e-67
Identity = 132/167 (79.04%), Postives = 144/167 (86.23%), Query Frame = 0


Query: 1   MIPEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIE 60
           +  EGV YAKKDYNLAKHP+IDVPNLQVIKLMQSFKSKEYVRETF+W +YYWYLTNDGIE
Sbjct: 15  LFQEGVLYAKKDYNLAKHPQIDVPNLQVIKLMQSFKSKEYVRETFSWQYYYWYLTNDGIE 74

Query: 61  FLRTYLNLPSEIVPATLKKQAKPAGRPFG-GPPGDRPRGPPRFEGGERRFGDRDGYRGGP 120
            LR YLNLPSEIVPATLKK A+P GRPFG GPPGDRPRGPPRFEG   RFGDRDGYRGGP
Sbjct: 75  HLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEGDRPRFGDRDGYRGGP 134

Query: 121 RGPGGEFGGDKGGAPADYRPSFGGPGGRPGFGR-GAGSYGGGAAASS 166
           RG  G+FGG+KGGAPA+++PSF   GGRPGFGR G G +G G  +SS
Sbjct: 135 RGAPGDFGGEKGGAPAEFQPSFRSSGGRPGFGRGGGGGFGAGPTSSS 181

[Close]

BLAST of HG10002675 vs. ExPASy Swiss-Prot
Match: Q9SW09 (40S ribosomal protein S10-1 OS=Arabidopsis thaliana OX=3702 GN=RPS10A PE=1 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 3.5e-67
Identity = 129/168 (76.79%), Postives = 141/168 (83.93%), Query Frame = 0


Query: 1   MIPEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIE 60
           +  EGVC+AKKD+NL KHP IDVPNLQVIKLMQSFKSKEYVRETFAWMHYYW+LTN+GIE
Sbjct: 15  LFKEGVCFAKKDFNLPKHPLIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIE 74

Query: 61  FLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGERRFGDRDGYRGGPR 120
           FLRTYLNLPS++VPATLKK AKP GRPFGGPPGDR RGPPR +G   RFGDRDGYRGGPR
Sbjct: 75  FLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRQRGPPRSDGDRPRFGDRDGYRGGPR 134

Query: 121 GPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAAASSNLP 169
           G     G +KGGAPAD++PSF G GGRPGFGRGAG Y   A + S  P
Sbjct: 135 G-----GDEKGGAPADFQPSFQGGGGRPGFGRGAGGYSAAAPSGSGFP 177

[Close]

BLAST of HG10002675 vs. ExPASy Swiss-Prot
Match: Q9LTF2 (40S ribosomal protein S10-3 OS=Arabidopsis thaliana OX=3702 GN=RPS10C PE=1 SV=2)

HSP 1 Score: 252.7 bits (644), Expect = 3.0e-66
Identity = 134/169 (79.29%), Postives = 145/169 (85.80%), Query Frame = 0


Query: 1   MIPEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIE 60
           +  EGVC+AKKD+NLAKHP IDVPNLQVIKLMQSFKSKEYVRETFAWMHYYW+LTN+GIE
Sbjct: 15  LFKEGVCFAKKDFNLAKHPLIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIE 74

Query: 61  FLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGER-RFGDRDGYRGGP 120
           FLRTYLNLPS++VPATLKK AKP GRPFGGPPGDR RG PR EGG+R RFGDRDGYR GP
Sbjct: 75  FLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRSRG-PRHEGGDRPRFGDRDGYRAGP 134

Query: 121 RGPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAAASSNLP 169
           R  GGEFGG+KGGAPADY+PSF G G   GFGRGAG Y   A + S LP
Sbjct: 135 RA-GGEFGGEKGGAPADYQPSFQGSG--RGFGRGAGGYSAAAPSGSGLP 179

[Close]

BLAST of HG10002675 vs. ExPASy Swiss-Prot
Match: Q9FFS8 (40S ribosomal protein S10-2 OS=Arabidopsis thaliana OX=3702 GN=RPS10B PE=2 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 2.4e-60
Identity = 131/167 (78.44%), Postives = 144/167 (86.23%), Query Frame = 0


Query: 1   MIPEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGI 60
           +  EGV +AKKD+NL +HP I+ VPNLQVIKLMQSFKSKEYVRETFAWMHYYW+LTN+GI
Sbjct: 15  LFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGI 74

Query: 61  EFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGERRFGDRDGYRGGP 120
           +FLRTYLNLPSEIVPATLKKQ KP GRPFGG  GDRPRGPPR + GERRFGDRDGYRGGP
Sbjct: 75  DFLRTYLNLPSEIVPATLKKQQKPLGRPFGG-GGDRPRGPPRGD-GERRFGDRDGYRGGP 134

Query: 121 RGPGGEFGGDKGGAPADYRPSF-GGPGG-RPGFGRGAGSYGGGAAAS 165
           +  GGE+ GDK GAPADY+P F GG GG R GFGRGAG +GGGAA S
Sbjct: 135 KS-GGEY-GDKAGAPADYQPGFRGGAGGARQGFGRGAGGFGGGAAGS 177

[Close]

BLAST of HG10002675 vs. ExPASy TrEMBL
Match: A0A5A7TTJ6 (40S ribosomal protein S10-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G001330 PE=4 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 1.9e-87
Identity = 164/168 (97.62%), Postives = 165/168 (98.21%), Query Frame = 0


Query: 1   MIPEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIE 60
           +  EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIE
Sbjct: 28  LFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIE 87

Query: 61  FLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGERRFGDRDGYRGGPR 120
           FLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGERRFGDRDGYRGGPR
Sbjct: 88  FLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGERRFGDRDGYRGGPR 147

Query: 121 GPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAAASSNLP 169
           GPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAA SSNLP
Sbjct: 148 GPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAAPSSNLP 195

[Close]

BLAST of HG10002675 vs. ExPASy TrEMBL
Match: A0A0A0KUQ3 (S10_plectin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G049090 PE=4 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 1.9e-87
Identity = 164/168 (97.62%), Postives = 165/168 (98.21%), Query Frame = 0


Query: 1   MIPEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIE 60
           +  EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIE
Sbjct: 15  LFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIE 74

Query: 61  FLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGERRFGDRDGYRGGPR 120
           FLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGERRFGDRDGYRGGPR
Sbjct: 75  FLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGERRFGDRDGYRGGPR 134

Query: 121 GPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAAASSNLP 169
           GPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAA SSNLP
Sbjct: 135 GPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAAPSSNLP 182

[Close]

BLAST of HG10002675 vs. ExPASy TrEMBL
Match: A0A6J1JA51 (40S ribosomal protein S10-1-like OS=Cucurbita maxima OX=3661 GN=LOC111483100 PE=4 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 2.4e-87
Identity = 164/168 (97.62%), Postives = 165/168 (98.21%), Query Frame = 0


Query: 1   MIPEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIE 60
           +  EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIE
Sbjct: 15  LFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIE 74

Query: 61  FLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGERRFGDRDGYRGGPR 120
           FLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGERRFGDRDGYRGGPR
Sbjct: 75  FLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGERRFGDRDGYRGGPR 134

Query: 121 GPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAAASSNLP 169
           GP GEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAAASSNLP
Sbjct: 135 GPAGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAAASSNLP 182

[Close]

BLAST of HG10002675 vs. ExPASy TrEMBL
Match: A0A5D3CXK7 (40S ribosomal protein S10-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004510 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 5.4e-87
Identity = 163/168 (97.02%), Postives = 164/168 (97.62%), Query Frame = 0


Query: 1   MIPEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIE 60
           +  EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIE
Sbjct: 38  LFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIE 97

Query: 61  FLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGERRFGDRDGYRGGPR 120
           FLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGERRFGDRDGYRGGPR
Sbjct: 98  FLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGERRFGDRDGYRGGPR 157

Query: 121 GPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAAASSNLP 169
           GPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAG YGGGAA SSNLP
Sbjct: 158 GPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGGAAPSSNLP 205

[Close]

BLAST of HG10002675 vs. ExPASy TrEMBL
Match: A0A1S3BST3 (40S ribosomal protein S10-1-like OS=Cucumis melo OX=3656 GN=LOC103493145 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 5.4e-87
Identity = 163/168 (97.02%), Postives = 164/168 (97.62%), Query Frame = 0


Query: 1   MIPEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIE 60
           +  EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIE
Sbjct: 15  LFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIE 74

Query: 61  FLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGERRFGDRDGYRGGPR 120
           FLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGERRFGDRDGYRGGPR
Sbjct: 75  FLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGERRFGDRDGYRGGPR 134

Query: 121 GPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAAASSNLP 169
           GPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAG YGGGAA SSNLP
Sbjct: 135 GPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGGAAPSSNLP 182

[Close]

BLAST of HG10002675 vs. TAIR 10
Match: AT4G25740.1 (RNA binding Plectin/S10 domain-containing protein )

HSP 1 Score: 255.8 bits (652), Expect = 2.5e-68
Identity = 129/168 (76.79%), Postives = 141/168 (83.93%), Query Frame = 0


Query: 1   MIPEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIE 60
           +  EGVC+AKKD+NL KHP IDVPNLQVIKLMQSFKSKEYVRETFAWMHYYW+LTN+GIE
Sbjct: 15  LFKEGVCFAKKDFNLPKHPLIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIE 74

Query: 61  FLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGERRFGDRDGYRGGPR 120
           FLRTYLNLPS++VPATLKK AKP GRPFGGPPGDR RGPPR +G   RFGDRDGYRGGPR
Sbjct: 75  FLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRQRGPPRSDGDRPRFGDRDGYRGGPR 134

Query: 121 GPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAAASSNLP 169
           G     G +KGGAPAD++PSF G GGRPGFGRGAG Y   A + S  P
Sbjct: 135 G-----GDEKGGAPADFQPSFQGGGGRPGFGRGAGGYSAAAPSGSGFP 177

[Close]

BLAST of HG10002675 vs. TAIR 10
Match: AT5G52650.1 (RNA binding Plectin/S10 domain-containing protein )

HSP 1 Score: 252.7 bits (644), Expect = 2.1e-67
Identity = 134/169 (79.29%), Postives = 145/169 (85.80%), Query Frame = 0


Query: 1   MIPEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIE 60
           +  EGVC+AKKD+NLAKHP IDVPNLQVIKLMQSFKSKEYVRETFAWMHYYW+LTN+GIE
Sbjct: 15  LFKEGVCFAKKDFNLAKHPLIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIE 74

Query: 61  FLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGER-RFGDRDGYRGGP 120
           FLRTYLNLPS++VPATLKK AKP GRPFGGPPGDR RG PR EGG+R RFGDRDGYR GP
Sbjct: 75  FLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRSRG-PRHEGGDRPRFGDRDGYRAGP 134

Query: 121 RGPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAAASSNLP 169
           R  GGEFGG+KGGAPADY+PSF G G   GFGRGAG Y   A + S LP
Sbjct: 135 RA-GGEFGGEKGGAPADYQPSFQGSG--RGFGRGAGGYSAAAPSGSGLP 179

[Close]

BLAST of HG10002675 vs. TAIR 10
Match: AT5G41520.1 (RNA binding Plectin/S10 domain-containing protein )

HSP 1 Score: 233.0 bits (593), Expect = 1.7e-61
Identity = 131/167 (78.44%), Postives = 144/167 (86.23%), Query Frame = 0


Query: 1   MIPEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGI 60
           +  EGV +AKKD+NL +HP I+ VPNLQVIKLMQSFKSKEYVRETFAWMHYYW+LTN+GI
Sbjct: 15  LFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGI 74

Query: 61  EFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGERRFGDRDGYRGGP 120
           +FLRTYLNLPSEIVPATLKKQ KP GRPFGG  GDRPRGPPR + GERRFGDRDGYRGGP
Sbjct: 75  DFLRTYLNLPSEIVPATLKKQQKPLGRPFGG-GGDRPRGPPRGD-GERRFGDRDGYRGGP 134

Query: 121 RGPGGEFGGDKGGAPADYRPSF-GGPGG-RPGFGRGAGSYGGGAAAS 165
           +  GGE+ GDK GAPADY+P F GG GG R GFGRGAG +GGGAA S
Sbjct: 135 KS-GGEY-GDKAGAPADYQPGFRGGAGGARQGFGRGAGGFGGGAAGS 177

[Close]

BLAST of HG10002675 vs. TAIR 10
Match: AT4G25740.2 (RNA binding Plectin/S10 domain-containing protein )

HSP 1 Score: 201.4 bits (511), Expect = 5.6e-52
Identity = 106/168 (63.10%), Postives = 117/168 (69.64%), Query Frame = 0


Query: 1   MIPEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIE 60
           +  EGVC+AKKD+NL KHP IDVPNLQVIKLMQSFKSKEYVRETFAWMHYYW+LTN+GIE
Sbjct: 15  LFKEGVCFAKKDFNLPKHPLIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIE 74

Query: 61  FLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGERRFGDRDGYRGGPR 120
           FLRTYLNLPS++VPATLKK AKP GRPFGGP G                           
Sbjct: 75  FLRTYLNLPSDVVPATLKKSAKPGGRPFGGPRG--------------------------- 134

Query: 121 GPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAAASSNLP 169
                 G +KGGAPAD++PSF G GGRPGFGRGAG Y   A + S  P
Sbjct: 135 ------GDEKGGAPADFQPSFQGGGGRPGFGRGAGGYSAAAPSGSGFP 149

[Close]

BLAST of HG10002675 vs. TAIR 10
Match: AT5G41520.2 (RNA binding Plectin/S10 domain-containing protein )

HSP 1 Score: 193.0 bits (489), Expect = 2.0e-49
Identity = 110/135 (81.48%), Postives = 118/135 (87.41%), Query Frame = 0


Query: 32  MQSFKSKEYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGP 91
           MQSFKSKEYVRETFAWMHYYW+LTN+GI+FLRTYLNLPSEIVPATLKKQ KP GRPFGG 
Sbjct: 1   MQSFKSKEYVRETFAWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPLGRPFGG- 60

Query: 92  PGDRPRGPPRFEGGERRFGDRDGYRGGPRGPGGEFGGDKGGAPADYRPSF-GGPGG-RPG 151
            GDRPRGPPR + GERRFGDRDGYRGGP+  GGE+ GDK GAPADY+P F GG GG R G
Sbjct: 61  GGDRPRGPPRGD-GERRFGDRDGYRGGPKS-GGEY-GDKAGAPADYQPGFRGGAGGARQG 120

Query: 152 FGRGAGSYGGGAAAS 165
           FGRGAG +GGGAA S
Sbjct: 121 FGRGAGGFGGGAAGS 131

The following BLAST results are available for this feature:

BLAST of HG10002675 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146529.1	3.8e-87	97.62	40S ribosomal protein S10-1 [Cucumis sativus] >KGN53350.1 hypothetical protein C...	[more]
KAA0044841.1	3.8e-87	97.62	40S ribosomal protein S10-1-like [Cucumis melo var. makuwa]	[more]
XP_022985005.1	5.0e-87	97.62	40S ribosomal protein S10-1-like [Cucurbita maxima] >XP_022985006.1 40S ribosoma...	[more]
TYK16623.1	1.1e-86	97.02	40S ribosomal protein S10-1-like [Cucumis melo var. makuwa]	[more]
XP_008452010.1	1.1e-86	97.02	PREDICTED: 40S ribosomal protein S10-1-like [Cucumis melo]	[more]

BLAST of HG10002675 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0DKK8	2.1e-67	79.04	40S ribosomal protein S10-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS10-1 ...	[more]
P0DKK9	2.1e-67	79.04	40S ribosomal protein S10-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS10-2 ...	[more]
Q9SW09	3.5e-67	76.79	40S ribosomal protein S10-1 OS=Arabidopsis thaliana OX=3702 GN=RPS10A PE=1 SV=1	[more]
Q9LTF2	3.0e-66	79.29	40S ribosomal protein S10-3 OS=Arabidopsis thaliana OX=3702 GN=RPS10C PE=1 SV=2	[more]
Q9FFS8	2.4e-60	78.44	40S ribosomal protein S10-2 OS=Arabidopsis thaliana OX=3702 GN=RPS10B PE=2 SV=1	[more]

BLAST of HG10002675 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TTJ6	1.9e-87	97.62	40S ribosomal protein S10-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A0A0KUQ3	1.9e-87	97.62	S10_plectin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G049090...	[more]
A0A6J1JA51	2.4e-87	97.62	40S ribosomal protein S10-1-like OS=Cucurbita maxima OX=3661 GN=LOC111483100 PE=...	[more]
A0A5D3CXK7	5.4e-87	97.02	40S ribosomal protein S10-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3BST3	5.4e-87	97.02	40S ribosomal protein S10-1-like OS=Cucumis melo OX=3656 GN=LOC103493145 PE=4 SV...	[more]

BLAST of HG10002675 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G25740.1	2.5e-68	76.79	RNA binding Plectin/S10 domain-containing protein	[more]
AT5G52650.1	2.1e-67	79.29	RNA binding Plectin/S10 domain-containing protein	[more]
AT5G41520.1	1.7e-61	78.44	RNA binding Plectin/S10 domain-containing protein	[more]
AT4G25740.2	5.6e-52	63.10	RNA binding Plectin/S10 domain-containing protein	[more]
AT5G41520.2	2.0e-49	81.48	RNA binding Plectin/S10 domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005326	Plectin/S10, N-terminal	PFAM	PF03501	S10_plectin	coord: 2..80 e-value: 8.7E-37 score: 125.1
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 1..90 e-value: 1.5E-39 score: 136.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..168
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..115
None	No IPR available	PANTHER	PTHR12146:SF20	40S RIBOSOMAL PROTEIN S10-1-LIKE	coord: 4..168
IPR037447	40S Ribosomal protein S10	PANTHER	PTHR12146	40S RIBOSOMAL PROTEIN S10	coord: 4..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10002675.1	HG10002675.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome