HG10002424 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10002424
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptiondormancy-associated protein homolog 4-like
LocationChr11: 6630646 .. 6632648 (+)
RNA-Seq ExpressionHG10002424
SyntenyHG10002424
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTTCCTCCAAAAATTATGGGACGAAACCCTCGCCGGTCCGGCTCCAGATTCCGGGCTCAGTCGGCTGCGTAAGTATAATTCCTTCTCCGCCTCCAGATCTCCGCCGATGTTATCGAACGACGTCGTCTCCAATATTCCACCAAGTATTCAAATCCCTAGCCCTACGCTCTCCCAGAGTCAGACCTCCTTCCGCCCTGAATCGCCCATCTCCTCCTCATCCACGCCGCGGACTCCACCGTCCACTCGTAAGTAGTATAATTTTTAATTCGAATACAATCCAATCTATTGATTTTGATGGGATCGTACGGTGTTGATGCAGCGCCAGAGACGCCGCGAGGAGACGAAATGAAGAGAATTACGAGAAGAAGAACCATTGATTATCCTCGCCGCCGTCCTCTGGAAGGACCTGAACCAACTACCCCTTCTGTTTATGATTGGTTAGTTTGTTTCCCCTTCTACTCCACTGTTATTCATGTTTTTTTCTCTATTAAACGTAGAAAAATCAGTCAAACTATTTATAAATATATAAAAATTTTACTGTCTATCAACGATAGACTGTGATAGAATTCTATCGATTATACTCTTGAACTAATTAAGTTTGAAATTTATTTCAAACTAACTTTGGTCAAATTCGTATATGGTATATGGAAAAAAACTAAAGACACATGACGCATCTGTAAACTAGATTTTTATTCTTTGGTTTATGATTTTTTTTTGCTACCGTGTGTGTTTAGATTTGTTTATTTAAGCAACACATAAGTAGATACAAATTTTTACATTCATGAATTTAGCAACAAAAGCGTTCAAGGGTTGTTTTTGAAGAAAATTTCAAACTTCAAGGGTTAATAATAAATTATTTAAAGTTTGGGGTATAATTAAAACCAATTCCATAGTTTTAAAGATATTTTTCATCATTTCACTTTTTTCGAAAAAAATTATAACATTTTGTTTAAGAAATTATTAATCAAAATATGGTCAAATTACAAATTTAGTTTATAAATTAATTTTAAGATTTTTTTGTCTAATAAATGATTAAACTTTAAATTTTTTATAATATATAGACCTTAAACTCTTCCAATTTTGTGTCTAATAAATTCTTAAAAACGATTCAATCTTGTGCTAGATTAATAGATTTTTTAGCTTTAAATTATGTGATTGTCAAAATGAGCAAAGCTTAGAGATAATTGACATTTTTTTTTCTTGAATTGGAGGTTCAAGTCTTCAAAACTCCACTTATCGCACTGGAAAAAAATACCATTAATTTGTTTGACATTTTCTTCAAATTCATGAATCTATTATATTATATAAAAGATAGGAACATTTATGGCTTTGTGAGTCATTAAATTGATATATTATTTTAAAAATTCAGGAACCAGACAAAAAAAAGTTGTTTTCAAATATAGAAAAATAAGTTAAAATATTTACAAATATAGAAAAAATTTATTGTCTATCAGCAATAGACCGCGATAGAATTATATCGTTTGAGCGATAAACAGTGAAATTTAACTACAACAAAATTCTATCGTTGTCTATCTAACTAAAACAAAATTCTATCGCGGTCTATCACCGATAGACATCAAAATTTTTCTATATTTGTAAATAGTATGATATTTTTTCTATTTATAGTAATTTCTAAAAAAAAATCCTATGATTAACAAATTTTTATTATAACATTGTCTCTCGAACTACAATCTTTCAATATAACTCGTTATCATTCAATATTTTTTAAAAATAACTACGAACAATTTTTTTTTATGTAATATGTTAGAAAGGGAAAGCCATAAATGAATTAAGCTATTCATTAATAGGGGTAGTTTGGTCATAAGTATGTTGTTGACATCTTTAACAATATTAATTAGAAGTATAATGTTGACATATTATTTGATGTTGATATATAATTTTATATAGGATCGTAGTAACTGCATTGGATCGTTGAAGGACAAGAGAAGAGTAATGGAAGAAGAGAATGAATATTGTAATTTCATGCGGATGAAGTAA

mRNA sequence

ATGAGTTTCCTCCAAAAATTATGGGACGAAACCCTCGCCGGTCCGGCTCCAGATTCCGGGCTCAGTCGGCTGCATCTCCGCCGATGTTATCGAACGACGTCGTCTCCAATATTCCACCAAGTATTCAAATCCCTAGCCCTACGCTCTCCCAGAGTCAGACCTCCTTCCGCCCTGAATCGCCCATCTCCTCCTCATCCACGCCGCGGACTCCACCGTCCACTCGATCGTAGTAACTGCATTGGATCGTTGAAGGACAAGAGAAGAGTAATGGAAGAAGAGAATGAATATTGTAATTTCATGCGGATGAAGTAA

Coding sequence (CDS)

ATGAGTTTCCTCCAAAAATTATGGGACGAAACCCTCGCCGGTCCGGCTCCAGATTCCGGGCTCAGTCGGCTGCATCTCCGCCGATGTTATCGAACGACGTCGTCTCCAATATTCCACCAAGTATTCAAATCCCTAGCCCTACGCTCTCCCAGAGTCAGACCTCCTTCCGCCCTGAATCGCCCATCTCCTCCTCATCCACGCCGCGGACTCCACCGTCCACTCGATCGTAGTAACTGCATTGGATCGTTGAAGGACAAGAGAAGAGTAATGGAAGAAGAGAATGAATATTGTAATTTCATGCGGATGAAGTAA

Protein sequence

MSFLQKLWDETLAGPAPDSGLSRLHLRRCYRTTSSPIFHQVFKSLALRSPRVRPPSALNRPSPPHPRRGLHRPLDRSNCIGSLKDKRRVMEEENEYCNFMRMK
Homology
[Close]
BLAST of HG10002424 vs. NCBI nr
Match: XP_022998213.1 (dormancy-associated protein homolog 4-like [Cucurbita maxima])

HSP 1 Score: 61.6 bits (148), Expect = 4.5e-06
Identity = 32/68 (47.06%), Postives = 42/68 (61.76%), Query Frame = 0 

Query: 1  MSFLQKLWDETLAGPAPDSGLSRLH-LRRCYRTTSSPIFHQVFKSLALRSPRVRPPSALN 60
          MSFL KLWDETLAGPAPDSGLSRL      + + S P+   + +S+ + SP +   S+  
Sbjct: 1  MSFLHKLWDETLAGPAPDSGLSRLRKYNSFFASRSPPMLSNIPRSIEIPSPTLSQNSSTT 60

Query: 61 RPSPPHPR 68
             PP P+
Sbjct: 61 TTPPPTPQ 68

[Close]
BLAST of HG10002424 vs. NCBI nr
Match: KAG6606672.1 (Dormancy-associated protein-like 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036392.1 Dormancy-associated protein-like 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 58.2 bits (139), Expect = 5.0e-05
Identity = 32/72 (44.44%), Postives = 40/72 (55.56%), Query Frame = 0 

Query: 1  MSFLQKLWDETLAGPAPDSGLSRLHLRRCYRTTSSPIF------HQVFKSLALRSPRVRP 60
          MSFL KLWDETLAGPAPDSGLSRL     +  + SP          + +S+ + SP +  
Sbjct: 1  MSFLHKLWDETLAGPAPDSGLSRLRKYNSFSASRSPPMLTNDRASNIPRSIEIPSPTLSQ 60

Query: 61 PSALNRPSPPHP 67
           S+     PP P
Sbjct: 61 NSSTTTTPPPTP 72

[Close]
BLAST of HG10002424 vs. NCBI nr
Match: XP_008460332.1 (PREDICTED: dormancy-associated protein homolog 4 [Cucumis melo])

HSP 1 Score: 57.4 bits (137), Expect = 8.5e-05
Identity = 26/36 (72.22%), Postives = 28/36 (77.78%), Query Frame = 0 

Query: 1  MSFLQKLWDETLAGPAPDSGLSRLHLRRCYRTTSSP 37
          MSFLQKLWDETLAGPAPDSGLSRL     +  + SP
Sbjct: 1  MSFLQKLWDETLAGPAPDSGLSRLRKYNSFSASRSP 36

[Close]
BLAST of HG10002424 vs. NCBI nr
Match: XP_038878401.1 (dormancy-associated protein homolog 4-like [Benincasa hispida])

HSP 1 Score: 57.4 bits (137), Expect = 8.5e-05
Identity = 26/36 (72.22%), Postives = 28/36 (77.78%), Query Frame = 0 

Query: 1  MSFLQKLWDETLAGPAPDSGLSRLHLRRCYRTTSSP 37
          MSFLQKLWDETLAGPAPDSGLSRL     +  + SP
Sbjct: 1  MSFLQKLWDETLAGPAPDSGLSRLRKYNSFSASRSP 36

[Close]
BLAST of HG10002424 vs. NCBI nr
Match: KAA0053526.1 (dormancy-associated protein-like protein 4 [Cucumis melo var. makuwa] >TYK19121.1 dormancy-associated protein-like protein 4 [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 8.5e-05
Identity = 26/36 (72.22%), Postives = 28/36 (77.78%), Query Frame = 0 

Query: 1  MSFLQKLWDETLAGPAPDSGLSRLHLRRCYRTTSSP 37
          MSFLQKLWDETLAGPAPDSGLSRL     +  + SP
Sbjct: 1  MSFLQKLWDETLAGPAPDSGLSRLRKYNSFSASRSP 36

[Close]
BLAST of HG10002424 vs. ExPASy Swiss-Prot
Match: F4HV65 (Dormancy-associated protein homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g54070 PE=3 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 5.7e-04
Identity = 19/35 (54.29%), Postives = 22/35 (62.86%), Query Frame = 0 

Query: 1  MSFLQKLWDETLAGPAPDSGLSRLHLRRCYRTTSS 36
          M FL KLWDET+AGP PD+GL +L       T  S
Sbjct: 1  MGFLHKLWDETVAGPTPDNGLGKLRKHDSLSTVRS 35

[Close]
BLAST of HG10002424 vs. ExPASy TrEMBL
Match: A0A6J1KG53 (dormancy-associated protein homolog 4-like OS=Cucurbita maxima OX=3661 GN=LOC111492926 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.2e-06
Identity = 32/68 (47.06%), Postives = 42/68 (61.76%), Query Frame = 0 

Query: 1  MSFLQKLWDETLAGPAPDSGLSRLH-LRRCYRTTSSPIFHQVFKSLALRSPRVRPPSALN 60
          MSFL KLWDETLAGPAPDSGLSRL      + + S P+   + +S+ + SP +   S+  
Sbjct: 1  MSFLHKLWDETLAGPAPDSGLSRLRKYNSFFASRSPPMLSNIPRSIEIPSPTLSQNSSTT 60

Query: 61 RPSPPHPR 68
             PP P+
Sbjct: 61 TTPPPTPQ 68

[Close]
BLAST of HG10002424 vs. ExPASy TrEMBL
Match: A0A0A0L9F5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G646010 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.4e-05
Identity = 34/69 (49.28%), Postives = 42/69 (60.87%), Query Frame = 0 

Query: 1  MSFLQKLWDETLAGPAPDSGLSRLHLRRCYRTTSSP--IFHQVFKSLALR---SPRVRPP 60
          MSFLQKLWDETLAGPAPDSGLSRL     +  + SP  + + V  + +      PR++ P
Sbjct: 1  MSFLQKLWDETLAGPAPDSGLSRLRKYNSFSASRSPPMLSNDVLSNNSNNINIPPRIQIP 60

Query: 61 SALNRPSPP 65
          S     SPP
Sbjct: 61 SPTLSQSPP 69

[Close]
BLAST of HG10002424 vs. ExPASy TrEMBL
Match: A0A5D3D6E1 (Dormancy-associated protein-like protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold522G00410 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.1e-05
Identity = 26/36 (72.22%), Postives = 28/36 (77.78%), Query Frame = 0 

Query: 1  MSFLQKLWDETLAGPAPDSGLSRLHLRRCYRTTSSP 37
          MSFLQKLWDETLAGPAPDSGLSRL     +  + SP
Sbjct: 1  MSFLQKLWDETLAGPAPDSGLSRLRKYNSFSASRSP 36

[Close]
BLAST of HG10002424 vs. ExPASy TrEMBL
Match: A0A1S3CC84 (dormancy-associated protein homolog 4 OS=Cucumis melo OX=3656 GN=LOC103499186 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.1e-05
Identity = 26/36 (72.22%), Postives = 28/36 (77.78%), Query Frame = 0 

Query: 1  MSFLQKLWDETLAGPAPDSGLSRLHLRRCYRTTSSP 37
          MSFLQKLWDETLAGPAPDSGLSRL     +  + SP
Sbjct: 1  MSFLQKLWDETLAGPAPDSGLSRLRKYNSFSASRSP 36

[Close]
BLAST of HG10002424 vs. ExPASy TrEMBL
Match: A0A6J1J079 (dormancy-associated protein homolog 4-like OS=Cucurbita maxima OX=3661 GN=LOC111480027 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 9.2e-05
Identity = 25/36 (69.44%), Postives = 28/36 (77.78%), Query Frame = 0 

Query: 1  MSFLQKLWDETLAGPAPDSGLSRLHLRRCYRTTSSP 37
          MSFLQKLWD+TLAGPAPDSGLSRL     +  + SP
Sbjct: 1  MSFLQKLWDDTLAGPAPDSGLSRLRKYNSFSASRSP 36

[Close]
BLAST of HG10002424 vs. TAIR 10
Match: AT1G54070.1 (Dormancy/auxin associated family protein )

HSP 1 Score: 45.1 bits (105), Expect = 4.1e-05
Identity = 19/35 (54.29%), Postives = 22/35 (62.86%), Query Frame = 0 

Query: 1  MSFLQKLWDETLAGPAPDSGLSRLHLRRCYRTTSS 36
          M FL KLWDET+AGP PD+GL +L       T  S
Sbjct: 1  MGFLHKLWDETVAGPTPDNGLGKLRKHDSLSTVRS 35

The following BLAST results are available for this feature:
BLAST of HG10002424 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022998213.14.5e-0647.06dormancy-associated protein homolog 4-like [Cucurbita maxima][more]
KAG6606672.15.0e-0544.44Dormancy-associated protein-like 4, partial [Cucurbita argyrosperma subsp. soror... [more]
XP_008460332.18.5e-0572.22PREDICTED: dormancy-associated protein homolog 4 [Cucumis melo][more]
XP_038878401.18.5e-0572.22dormancy-associated protein homolog 4-like [Benincasa hispida][more]
KAA0053526.18.5e-0572.22dormancy-associated protein-like protein 4 [Cucumis melo var. makuwa] >TYK19121.... [more]
BLAST of HG10002424 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F4HV655.7e-0454.29Dormancy-associated protein homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g540... [more]
BLAST of HG10002424 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KG532.2e-0647.06dormancy-associated protein homolog 4-like OS=Cucurbita maxima OX=3661 GN=LOC111... [more]
A0A0A0L9F51.4e-0549.28Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G646010 PE=3 SV=1[more]
A0A5D3D6E14.1e-0572.22Dormancy-associated protein-like protein 4 OS=Cucumis melo var. makuwa OX=119469... [more]
A0A1S3CC844.1e-0572.22dormancy-associated protein homolog 4 OS=Cucumis melo OX=3656 GN=LOC103499186 PE... [more]
A0A6J1J0799.2e-0569.44dormancy-associated protein homolog 4-like OS=Cucurbita maxima OX=3661 GN=LOC111... [more]
BLAST of HG10002424 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G54070.14.1e-0554.29Dormancy/auxin associated family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10002424.1HG10002424.1mRNA