Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACGGCCATTGACCACATTGATCTTCGTGATTTCGGGGTTTGCTTTCAGTGTTTTGTCGCTTCTTGTCGAGTCTCAGACTCAAGATGGAGCCAATTCTACTCTCTCGCCGCCGATTGTGTCTCCGCCGATACCTTCTCCACCGCCTCCCTCTCCGCCGCCACCACCGCCATTGCTATCGCCACCGCCACCACCCCCGCCTCCGCCTCCGCCTCCGCTTCCATCGCCATCTCCTCCCCCATTTTCCCCACCCCCTCCATTTCCACCGCCTCCGCCACCTCGCCGTAGTCCGCCGCCCTCTCATGCATCCTCCATACAGAATAGAAAAAAATCGCCACCAGTGCCTCCGAATAACATTAATACTAATCAAGGGTCGAAGCAAAGTCTCAATAAGGGGAAGAAAGTTGGGTTGTTCTTTGTAGGTATTGCCGCAGTCCTCCAAATCTGTGTGGTGGGATTTTTGGTATTCAAGAGACGGCAGCTTCTAAGAGTCAAAGACCGATATGAAGGCTTTTCATGA
mRNA sequence
ATGGAACGGCCATTGACCACATTGATCTTCGTGATTTCGGGGTTTGCTTTCAGTGTTTTGTCGCTTCTTGTCGAGTCTCAGACTCAAGATGGAGCCAATTCTACTCTCTCGCCGCCGATTGTGTCTCCGCCGATACCTTCTCCACCGCCTCCCTCTCCGCCGCCACCACCGCCATTGCTATCGCCACCGCCACCACCCCCGCCTCCGCCTCCGCCTCCGCTTCCATCGCCATCTCCTCCCCCATTTTCCCCACCCCCTCCATTTCCACCGCCTCCGCCACCTCGCCGTAGTCCGCCGCCCTCTCATGCATCCTCCATACAGAATAGAAAAAAATCGCCACCAGTGCCTCCGAATAACATTAATACTAATCAAGGGTCGAAGCAAAGTCTCAATAAGGGGAAGAAAGTTGGGTTGTTCTTTGTAGGTATTGCCGCAGTCCTCCAAATCTGTGTGGTGGGATTTTTGGTATTCAAGAGACGGCAGCTTCTAAGAGTCAAAGACCGATATGAAGGCTTTTCATGA
Coding sequence (CDS)
ATGGAACGGCCATTGACCACATTGATCTTCGTGATTTCGGGGTTTGCTTTCAGTGTTTTGTCGCTTCTTGTCGAGTCTCAGACTCAAGATGGAGCCAATTCTACTCTCTCGCCGCCGATTGTGTCTCCGCCGATACCTTCTCCACCGCCTCCCTCTCCGCCGCCACCACCGCCATTGCTATCGCCACCGCCACCACCCCCGCCTCCGCCTCCGCCTCCGCTTCCATCGCCATCTCCTCCCCCATTTTCCCCACCCCCTCCATTTCCACCGCCTCCGCCACCTCGCCGTAGTCCGCCGCCCTCTCATGCATCCTCCATACAGAATAGAAAAAAATCGCCACCAGTGCCTCCGAATAACATTAATACTAATCAAGGGTCGAAGCAAAGTCTCAATAAGGGGAAGAAAGTTGGGTTGTTCTTTGTAGGTATTGCCGCAGTCCTCCAAATCTGTGTGGTGGGATTTTTGGTATTCAAGAGACGGCAGCTTCTAAGAGTCAAAGACCGATATGAAGGCTTTTCATGA
Protein sequence
MERPLTTLIFVISGFAFSVLSLLVESQTQDGANSTLSPPIVSPPIPSPPPPSPPPPPPLLSPPPPPPPPPPPPLPSPSPPPFSPPPPFPPPPPPRRSPPPSHASSIQNRKKSPPVPPNNINTNQGSKQSLNKGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRVKDRYEGFS
Homology
BLAST of HG10002389 vs. NCBI nr
Match:
XP_038900729.1 (proline-rich receptor-like protein kinase PERK2 [Benincasa hispida])
HSP 1 Score: 209.5 bits (532), Expect = 2.3e-50
Identity = 153/178 (85.96%), Postives = 155/178 (87.08%), Query Frame = 0
Query: 1 MERPLTTLIFVISGFAFSVLSLLVESQTQDGANSTLSPPIVSPPIPSPPPPSPPPPPPLL 60
MERPLTTLIFVISGFAFSVLSLLVESQTQDGAN TLSPPI SPP PSPPPP PPP PL
Sbjct: 1 MERPLTTLIFVISGFAFSVLSLLVESQTQDGANPTLSPPIPSPPPPSPPPP-PPPLSPLP 60
Query: 61 SPPPPPPPP----PPPPLPSPSPPPFSPPPPFPPPPPPRRSPPPSHASSIQNRKKSPPVP 120
PPPPPPPP PPPP SPSPPPFSPPPPFP P PPRR PPP HAS +N KKSPPVP
Sbjct: 61 PPPPPPPPPPILSPPPPPLSPSPPPFSPPPPFPSPLPPRRRPPPFHAS--ENGKKSPPVP 120
Query: 121 PNNI-NTNQGSKQSLNKGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRVKDRYEGFS 174
P NI NTNQGSK+SLNKGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRVKDRYEGFS
Sbjct: 121 PKNINNTNQGSKRSLNKGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRVKDRYEGFS 175
BLAST of HG10002389 vs. NCBI nr
Match:
XP_011651738.2 (LOW QUALITY PROTEIN: basic proline-rich protein [Cucumis sativus])
HSP 1 Score: 198.4 bits (503), Expect = 5.2e-47
Identity = 144/176 (81.82%), Postives = 150/176 (85.23%), Query Frame = 0
Query: 1 MERPLTTLIFVISGFAFSVLSLLVESQTQDGANSTLSPPIVSPPIPSPPPPSPPPPPPLL 60
MERPLTTLIFVI+GFAFSVLSLLVESQT DGAN TL SPP PS PPPSP PPPP L
Sbjct: 1 MERPLTTLIFVITGFAFSVLSLLVESQTPDGANPTL-----SPPRPSSPPPSPSPPPPPL 60
Query: 61 SPPPPPPPPPP---PPLPSPSPPPFSPPPPFPPPPPPRRSPPPSHASSIQNRKKSPPVPP 120
PPPPPP PPP PP PSPSPPPFSPPPP PPP RR+PPP ASS++ +KK PPVPP
Sbjct: 61 PPPPPPPXPPPPITPPPPSPSPPPFSPPPP-PPPHRHRRNPPPPLASSVERKKKRPPVPP 120
Query: 121 NNINTNQGSKQSLNKGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRVKDRYEGFS 174
NINTNQGSK+SLNKGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRVKDRYEGFS
Sbjct: 121 KNINTNQGSKRSLNKGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRVKDRYEGFS 170
BLAST of HG10002389 vs. NCBI nr
Match:
XP_008463997.1 (PREDICTED: leucine-rich repeat extensin-like protein 3 [Cucumis melo])
HSP 1 Score: 196.1 bits (497), Expect = 2.6e-46
Identity = 144/176 (81.82%), Postives = 149/176 (84.66%), Query Frame = 0
Query: 1 MERPLTTLIFVISGFAFSVLSLLVESQTQDGANSTLSPPIVSPPIPSPPPPSPPPPPPLL 60
MERPLTTLIFVISGFAFSVLSLLVESQT D AN TL SPP+PSPPPPSP PPPP L
Sbjct: 1 MERPLTTLIFVISGFAFSVLSLLVESQTPDEANPTL-----SPPMPSPPPPSPSPPPPPL 60
Query: 61 SPPPPPPPPPP---PPLPSPSPPPFSPPPPFPPPPPPRRSPPPSHASSIQNRKKSPPVPP 120
PPPPPPPPPP P PSPSPPPFSP PP PPP RRSPPP ASS++ +KK PPVPP
Sbjct: 61 PPPPPPPPPPPRIISPPPSPSPPPFSPSPP-PPPHRHRRSPPPPLASSMERKKKRPPVPP 120
Query: 121 NNINTNQGSKQSLNKGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRVKDRYEGFS 174
NINTNQ SK+SLNKGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRVKDRYEGFS
Sbjct: 121 KNINTNQASKRSLNKGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRVKDRYEGFS 170
BLAST of HG10002389 vs. NCBI nr
Match:
XP_022998566.1 (leucine-rich repeat extensin-like protein 3 [Cucurbita maxima])
HSP 1 Score: 140.6 bits (353), Expect = 1.3e-29
Identity = 133/205 (64.88%), Postives = 143/205 (69.76%), Query Frame = 0
Query: 1 MERPLTTLIFVISGFAFSVLSLLVESQTQDGANSTLSPPIVSPPIPSPPPPSPPPPPPLL 60
MERPL+T IFVISGFAFS+LSLLVESQ +DGA S+ SPP PP PSPPPPSPPPPPP L
Sbjct: 1 MERPLSTFIFVISGFAFSILSLLVESQARDGAISSSSPP---PPPPSPPPPSPPPPPPPL 60
Query: 61 SPP------------------PPPPPP---PPPPLPSPSPP---PFSPPPPFPPPPPP-- 120
SPP PPPP P PPPP+ P PP P SPPP FPPPP P
Sbjct: 61 SPPQSPPLSPPQSPPQSPPLSPPPPSPNFVPPPPIFVPPPPPASPSSPPPIFPPPPSPPS 120
Query: 121 --RRS---PPPSHASSIQNRKKSPPVPPNNINTN-QGSKQSLNKGKKVGLFFVGIAAVLQ 174
RS PPP ASS N KK P V NN + N +GSK+SLN GKKVGLFFVGIAAVLQ
Sbjct: 121 LQHRSTPLPPPIPASSDAN-KKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQ 180
BLAST of HG10002389 vs. NCBI nr
Match:
XP_023523257.1 (leucine-rich repeat extensin-like protein 3 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 139.8 bits (351), Expect = 2.2e-29
Identity = 125/196 (63.78%), Postives = 136/196 (69.39%), Query Frame = 0
Query: 1 MERPLTTLIFVISGFAFSVLSLLVESQTQDGANSTLSPPIVSPPIPSPPPPSPPPPPPLL 60
MERP +TLIFVISGFAFS+LSLLVESQ +DGA S+ SPP PP PSPPPPSPPPPPP
Sbjct: 1 MERPFSTLIFVISGFAFSILSLLVESQARDGAISSSSPP---PPPPSPPPPSPPPPPP-- 60
Query: 61 SPPPP--PPPPPPPPLPS--PSPPP--FSPPPPFPPPPPPRRSPPPSHASSIQNRKKSPP 120
PPPP PP PPPP P+ P PPP PPPP PPP PPP S+Q+R PP
Sbjct: 61 -PPPPLSPPQSPPPPSPNFVPPPPPNFVPPPPPASSSPPPPIFPPPPSLPSLQHRSTPPP 120
Query: 121 VPP-----------------NNINTNQGSKQSLNKGKKVGLFFVGIAAVLQICVVGFLVF 174
PP NN + +GSK+SLN GKKVGLFFVGIAAVLQICVVGFLVF
Sbjct: 121 SPPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLVF 180
BLAST of HG10002389 vs. ExPASy TrEMBL
Match:
A0A0A0LC75 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G651880 PE=4 SV=1)
HSP 1 Score: 201.4 bits (511), Expect = 3.0e-48
Identity = 145/176 (82.39%), Postives = 151/176 (85.80%), Query Frame = 0
Query: 1 MERPLTTLIFVISGFAFSVLSLLVESQTQDGANSTLSPPIVSPPIPSPPPPSPPPPPPLL 60
MERPLTTLIFVI+GFAFSVLSLLVESQT DGAN TL SPP PS PPPSP PPPP L
Sbjct: 1 MERPLTTLIFVITGFAFSVLSLLVESQTPDGANPTL-----SPPRPSSPPPSPSPPPPPL 60
Query: 61 SPPPPPPPPPP---PPLPSPSPPPFSPPPPFPPPPPPRRSPPPSHASSIQNRKKSPPVPP 120
PPPPPPPPPP PP PSPSPPPFSPPPP PPP RR+PPP ASS++ +KK PPVPP
Sbjct: 61 PPPPPPPPPPPPITPPPPSPSPPPFSPPPP-PPPHRHRRNPPPPLASSVERKKKRPPVPP 120
Query: 121 NNINTNQGSKQSLNKGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRVKDRYEGFS 174
NINTNQGSK+SLNKGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRVKDRYEGFS
Sbjct: 121 KNINTNQGSKRSLNKGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRVKDRYEGFS 170
BLAST of HG10002389 vs. ExPASy TrEMBL
Match:
A0A1S3CKG6 (leucine-rich repeat extensin-like protein 3 OS=Cucumis melo OX=3656 GN=LOC103501988 PE=4 SV=1)
HSP 1 Score: 196.1 bits (497), Expect = 1.3e-46
Identity = 144/176 (81.82%), Postives = 149/176 (84.66%), Query Frame = 0
Query: 1 MERPLTTLIFVISGFAFSVLSLLVESQTQDGANSTLSPPIVSPPIPSPPPPSPPPPPPLL 60
MERPLTTLIFVISGFAFSVLSLLVESQT D AN TL SPP+PSPPPPSP PPPP L
Sbjct: 1 MERPLTTLIFVISGFAFSVLSLLVESQTPDEANPTL-----SPPMPSPPPPSPSPPPPPL 60
Query: 61 SPPPPPPPPPP---PPLPSPSPPPFSPPPPFPPPPPPRRSPPPSHASSIQNRKKSPPVPP 120
PPPPPPPPPP P PSPSPPPFSP PP PPP RRSPPP ASS++ +KK PPVPP
Sbjct: 61 PPPPPPPPPPPRIISPPPSPSPPPFSPSPP-PPPHRHRRSPPPPLASSMERKKKRPPVPP 120
Query: 121 NNINTNQGSKQSLNKGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRVKDRYEGFS 174
NINTNQ SK+SLNKGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRVKDRYEGFS
Sbjct: 121 KNINTNQASKRSLNKGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRVKDRYEGFS 170
BLAST of HG10002389 vs. ExPASy TrEMBL
Match:
A0A6J1KAI1 (leucine-rich repeat extensin-like protein 3 OS=Cucurbita maxima OX=3661 GN=LOC111493162 PE=4 SV=1)
HSP 1 Score: 140.6 bits (353), Expect = 6.2e-30
Identity = 133/205 (64.88%), Postives = 143/205 (69.76%), Query Frame = 0
Query: 1 MERPLTTLIFVISGFAFSVLSLLVESQTQDGANSTLSPPIVSPPIPSPPPPSPPPPPPLL 60
MERPL+T IFVISGFAFS+LSLLVESQ +DGA S+ SPP PP PSPPPPSPPPPPP L
Sbjct: 1 MERPLSTFIFVISGFAFSILSLLVESQARDGAISSSSPP---PPPPSPPPPSPPPPPPPL 60
Query: 61 SPP------------------PPPPPP---PPPPLPSPSPP---PFSPPPPFPPPPPP-- 120
SPP PPPP P PPPP+ P PP P SPPP FPPPP P
Sbjct: 61 SPPQSPPLSPPQSPPQSPPLSPPPPSPNFVPPPPIFVPPPPPASPSSPPPIFPPPPSPPS 120
Query: 121 --RRS---PPPSHASSIQNRKKSPPVPPNNINTN-QGSKQSLNKGKKVGLFFVGIAAVLQ 174
RS PPP ASS N KK P V NN + N +GSK+SLN GKKVGLFFVGIAAVLQ
Sbjct: 121 LQHRSTPLPPPIPASSDAN-KKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQ 180
BLAST of HG10002389 vs. ExPASy TrEMBL
Match:
A0A6J1G9A4 (leucine-rich repeat extensin-like protein 3 OS=Cucurbita moschata OX=3662 GN=LOC111452141 PE=4 SV=1)
HSP 1 Score: 138.3 bits (347), Expect = 3.1e-29
Identity = 130/190 (68.42%), Postives = 139/190 (73.16%), Query Frame = 0
Query: 1 MERPLTTLIFVISGFAFSVLSLLVESQTQDGANSTLSPPIVSPPIPSPPPPSPPPPPPLL 60
MERP +TLIFVISGFAFS+LSLLVESQ +DGA + SPP PP PSPPPPSPPPPPP
Sbjct: 1 MERPFSTLIFVISGFAFSILSLLVESQARDGAIPSSSPP-PPPPPPSPPPPSPPPPPP-- 60
Query: 61 SPPPP--PPPPPPPPLPSPS----PPP--FSPPPPFPPPPPPRRS--------PPPSHAS 120
PPPP PP PPPP PSP+ PPP SPPPP PPPP S PPP AS
Sbjct: 61 -PPPPLSPPQSPPPPSPSPNFVPPPPPASSSPPPPIFPPPPSLPSLQHRSTPPPPPIPAS 120
Query: 121 SIQNRKKSPPVPPNNINTN-QGSKQSLNKGKKVGLFFVGIAAVLQICVVGFLVFKRRQLL 174
S N KK P V NN + N +GSK+SLN GKKVGLFFVGIAAVLQICVVGFLVFKRRQLL
Sbjct: 121 SDAN-KKPPEVSRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLVFKRRQLL 180
BLAST of HG10002389 vs. ExPASy TrEMBL
Match:
A0A6J1DGD7 (proline-rich receptor-like protein kinase PERK9 OS=Momordica charantia OX=3673 GN=LOC111020262 PE=4 SV=1)
HSP 1 Score: 118.2 bits (295), Expect = 3.3e-23
Identity = 112/179 (62.57%), Postives = 123/179 (68.72%), Query Frame = 0
Query: 1 MERPLTTLIFVISGFAFSVLSLLVESQTQDGANSTLSPPIVSPP-IPSPPPPSPPPPPPL 60
MERPLTT IFVISGFAFS+LSLLVE Q QD NS ++P SPP +PSPPP
Sbjct: 1 MERPLTTFIFVISGFAFSILSLLVECQPQDRPNSPVTP---SPPRLPSPPP--------- 60
Query: 61 LSPPPPPPPPPPPPLPSPSPPPFSPPPPFPPPPPPRR---SPPPSHASSIQNRK-KSPPV 120
SP PPP PP PP PSP PP PP P PPPP RR SPPPS ASS +N +
Sbjct: 61 RSPSLPPPSPPSPPQPSPLSPP--PPSPVSPPPPRRRRSSSPPPSRASSARNENPQLGGT 120
Query: 121 PPNNINTNQGSKQS-LNKGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRVKDRYEGFS 174
N NQ K+S LNKGK+VGLFFVGIAAVLQ+CVVGFLVFKRRQLLR K++YE FS
Sbjct: 121 HKKNNKKNQAEKRSRLNKGKQVGLFFVGIAAVLQVCVVGFLVFKRRQLLRFKEQYESFS 165
BLAST of HG10002389 vs. TAIR 10
Match:
AT1G54215.1 (proline-rich family protein )
HSP 1 Score: 47.4 bits (111), Expect = 1.4e-05
Identity = 80/174 (45.98%), Postives = 97/174 (55.75%), Query Frame = 0
Query: 9 IFVISGFAFSVLSLLVESQTQDGANSTLSPPIVSPPIPSPPPPSPPPPPPLLSPPPPPPP 68
+F+++ F LLV+SQ PP+ SPPPP PPPPPP PPPPPPP
Sbjct: 15 VFILALFFTIHCFLLVQSQ---------DPPLFP---QSPPPPPPPPPPP---PPPPPPP 74
Query: 69 PPPPP---------LPSPSPP------PFSPPPPFPPPPPPRRSPPPSHASSIQNRKKSP 128
PPPPP +P P PP P S PP PP PPPR PPP +N +
Sbjct: 75 PPPPPAVNMSVETGIPPPPPPVTDMIKPLSSPP--PPQPPPRSQPPPKPPQ--KNLPRRH 134
Query: 129 PVPPNNINTNQGSKQSLNKGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRVKD 168
P PP + + + LNKGK VGL FVG+ A+LQ+ VV FLVFKR+QLL +KD
Sbjct: 135 PPPPR--SPEKPKRDGLNKGKTVGLVFVGLIAMLQVIVVVFLVFKRKQLLSLKD 167
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038900729.1 | 2.3e-50 | 85.96 | proline-rich receptor-like protein kinase PERK2 [Benincasa hispida] | [more] |
XP_011651738.2 | 5.2e-47 | 81.82 | LOW QUALITY PROTEIN: basic proline-rich protein [Cucumis sativus] | [more] |
XP_008463997.1 | 2.6e-46 | 81.82 | PREDICTED: leucine-rich repeat extensin-like protein 3 [Cucumis melo] | [more] |
XP_022998566.1 | 1.3e-29 | 64.88 | leucine-rich repeat extensin-like protein 3 [Cucurbita maxima] | [more] |
XP_023523257.1 | 2.2e-29 | 63.78 | leucine-rich repeat extensin-like protein 3 [Cucurbita pepo subsp. pepo] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0LC75 | 3.0e-48 | 82.39 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G651880 PE=4 SV=1 | [more] |
A0A1S3CKG6 | 1.3e-46 | 81.82 | leucine-rich repeat extensin-like protein 3 OS=Cucumis melo OX=3656 GN=LOC103501... | [more] |
A0A6J1KAI1 | 6.2e-30 | 64.88 | leucine-rich repeat extensin-like protein 3 OS=Cucurbita maxima OX=3661 GN=LOC11... | [more] |
A0A6J1G9A4 | 3.1e-29 | 68.42 | leucine-rich repeat extensin-like protein 3 OS=Cucurbita moschata OX=3662 GN=LOC... | [more] |
A0A6J1DGD7 | 3.3e-23 | 62.57 | proline-rich receptor-like protein kinase PERK9 OS=Momordica charantia OX=3673 G... | [more] |
Match Name | E-value | Identity | Description | |
AT1G54215.1 | 1.4e-05 | 45.98 | proline-rich family protein | [more] |