HG10002357 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10002357
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionsnRNA-activating protein complex subunit 4
LocationChr11: 5942288 .. 5943533 (-)
RNA-Seq ExpressionHG10002357
SyntenyHG10002357
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCACCGCAACCATGACGAGGAAGGTGCCATAGAGCTTCCTGCCGGCAAGAAAGATGATGTGGTTGATGAGGACGTGGAAGCCCTTTGGAGAGCCTATAGGCTTGTTGGAGTTAATCCTGAGGATTGCATTAATCCTAGGTTGTCATCACCTGCTGCTGGAGATGCTAATCTTGGTTCTGATTCTGACGATCTTGATGATTTCGAACTTCTTCGAAATATTCAGAGTCGGTTCTCGATTGTGGCTGATGAGCAACCGTTGAGTACTCTCCCACCAGTGTCCCCACACGAGGAGGAAGATGAATTCGAGATGCTTCGTTCAATTCAGCGGCGCTTTGCAGCGTATAAAAGCGGTAGATTTTTCGTAACTATAAAGATTACTTTGTAAATGTACTCTTTCCACGGCTTAGAGTCTAACCGTTACAAAGTTGCTTTTTCGGGTTCAAGAGCAAACCCAATTCTTTCCACGGGTTAGGATCAAACCGTTACAATGTTGGTGAAAAATTTAAATCACACAATAAGACTCTCATGGGTATACAAATTTTAGCTCACACACTTTAATTGTAACGACCCGAACTCGGGGATCGTGAGGACATGAAAGCATGGGATGAAAGCATGAAGCATGGTTAAGAAAGACTTAAGAGAATTGAAAGGTACTAACATGTACCAACAAGGTGCACCTTCTTTTTCGGTGGCTCAATCATAATCATAAGAACTCCACAGTTAAGCCTTAGCCCTTTGGCTTTTGGCTTTTTTTGGATGTTCCCACTACCACTAGGCCCATCCATGATGGTTTGTTTGAAATAAATTGTTAGGTATATATATACCTATTAGTTTGTAATAGATAGAGGTACTTTATATATCTCTCTATAGTGTTTGGGCTATTTTGTCTAATAGAAATAAACTTTGTCATTATATTTTAGAAGTATATCTCTTCGCTCGAAATGGGTGGTTTCGTACTTCTTTGTAATGTTCATTGGTGTCGAATAATGGGATGATGGTTGAGGTCAAATTATAAAATTTGGCTTTTCACCCGTTTCATCTACTATCTTAAAAGATGAATGTTTTTTACCAAGGGGAGGTTGTCGAATTTGATGGTGTGATTAGTTCTGGTGCTGGTTCAATTTTTGTAGTGGTTCACATATTTAGGACTCATTTATCTACTTTATCTCCTTTTATGTGTTGAGGCTAATGCTATTCTAGAAGGTCTTCGACTGGTGAAAGGATTGGTATTCGCTCGCTGA

mRNA sequence

ATGTCTCACCGCAACCATGACGAGGAAGGTGCCATAGAGCTTCCTGCCGGCAAGAAAGATGATGTGGTTGATGAGGACGTGGAAGCCCTTTGGAGAGCCTATAGGCTTGTTGGAGTTAATCCTGAGGATTGCATTAATCCTAGGTTGTCATCACCTGCTGCTGGAGATGCTAATCTTGGTTCTGATTCTGACGATCTTGATGATTTCGAACTTCTTCGAAATATTCAGAGTCGGTTCTCGATTGTGGCTGATGAGCAACCGTTGAGTACTCTCCCACCAGTGTCCCCACACGAGGAGGAAGATGAATTCGAGATGCTTCGTTCAATTCAGCGGCGCTTTGCAGCGTATAAAAGCGGACTCATTTATCTACTTTATCTCCTTTTATGTGTTGAGGCTAATGCTATTCTAGAAGGTCTTCGACTGGTGAAAGGATTGGTATTCGCTCGCTGA

Coding sequence (CDS)

ATGTCTCACCGCAACCATGACGAGGAAGGTGCCATAGAGCTTCCTGCCGGCAAGAAAGATGATGTGGTTGATGAGGACGTGGAAGCCCTTTGGAGAGCCTATAGGCTTGTTGGAGTTAATCCTGAGGATTGCATTAATCCTAGGTTGTCATCACCTGCTGCTGGAGATGCTAATCTTGGTTCTGATTCTGACGATCTTGATGATTTCGAACTTCTTCGAAATATTCAGAGTCGGTTCTCGATTGTGGCTGATGAGCAACCGTTGAGTACTCTCCCACCAGTGTCCCCACACGAGGAGGAAGATGAATTCGAGATGCTTCGTTCAATTCAGCGGCGCTTTGCAGCGTATAAAAGCGGACTCATTTATCTACTTTATCTCCTTTTATGTGTTGAGGCTAATGCTATTCTAGAAGGTCTTCGACTGGTGAAAGGATTGGTATTCGCTCGCTGA

Protein sequence

MSHRNHDEEGAIELPAGKKDDVVDEDVEALWRAYRLVGVNPEDCINPRLSSPAAGDANLGSDSDDLDDFELLRNIQSRFSIVADEQPLSTLPPVSPHEEEDEFEMLRSIQRRFAAYKSGLIYLLYLLLCVEANAILEGLRLVKGLVFAR
Homology
[Close]
BLAST of HG10002357 vs. NCBI nr
Match: XP_038905712.1 (uncharacterized protein LOC120091681 isoform X1 [Benincasa hispida] >XP_038905713.1 uncharacterized protein LOC120091681 isoform X1 [Benincasa hispida] >XP_038905715.1 uncharacterized protein LOC120091681 isoform X1 [Benincasa hispida] >XP_038905716.1 uncharacterized protein LOC120091681 isoform X1 [Benincasa hispida])

HSP 1 Score: 186.8 bits (473), Expect = 1.3e-43
Identity = 97/121 (80.17%), Postives = 105/121 (86.78%), Query Frame = 0 

Query: 1   MSHRNHDEEGAIELPAGKKDDVVDEDVEALWRAYRLVGVNPEDCINPRLSSPAAGDANLG 60
           MS  NH +EG +ELPA K+DDVVDED+E L RAYRLVGVNPED INPRLSSPA GDAN G
Sbjct: 31  MSCHNHGDEGDVELPANKEDDVVDEDMEVLQRAYRLVGVNPEDYINPRLSSPAVGDANSG 90

Query: 61  SDSDDLDDFELLRNIQSRFSIVADEQPLSTLPPVSPHEEEDEFEMLRSIQRRFAAYKSGL 120
            DSDD DDFELLRNIQ+RFSIV DEQPLSTLPPVS  EEEDEFEMLRSIQRRFAAY+S +
Sbjct: 91  FDSDD-DDFELLRNIQNRFSIVDDEQPLSTLPPVSLDEEEDEFEMLRSIQRRFAAYESDV 150

Query: 121 I 122
           +
Sbjct: 151 L 150

[Close]
BLAST of HG10002357 vs. NCBI nr
Match: XP_038905717.1 (uncharacterized protein LOC120091681 isoform X2 [Benincasa hispida] >XP_038905718.1 uncharacterized protein LOC120091681 isoform X2 [Benincasa hispida] >XP_038905719.1 uncharacterized protein LOC120091681 isoform X2 [Benincasa hispida] >XP_038905720.1 uncharacterized protein LOC120091681 isoform X2 [Benincasa hispida])

HSP 1 Score: 186.8 bits (473), Expect = 1.3e-43
Identity = 97/121 (80.17%), Postives = 105/121 (86.78%), Query Frame = 0 

Query: 1   MSHRNHDEEGAIELPAGKKDDVVDEDVEALWRAYRLVGVNPEDCINPRLSSPAAGDANLG 60
           MS  NH +EG +ELPA K+DDVVDED+E L RAYRLVGVNPED INPRLSSPA GDAN G
Sbjct: 1   MSCHNHGDEGDVELPANKEDDVVDEDMEVLQRAYRLVGVNPEDYINPRLSSPAVGDANSG 60

Query: 61  SDSDDLDDFELLRNIQSRFSIVADEQPLSTLPPVSPHEEEDEFEMLRSIQRRFAAYKSGL 120
            DSDD DDFELLRNIQ+RFSIV DEQPLSTLPPVS  EEEDEFEMLRSIQRRFAAY+S +
Sbjct: 61  FDSDD-DDFELLRNIQNRFSIVDDEQPLSTLPPVSLDEEEDEFEMLRSIQRRFAAYESDV 120

Query: 121 I 122
           +
Sbjct: 121 L 120

[Close]
BLAST of HG10002357 vs. NCBI nr
Match: XP_011650584.1 (uncharacterized protein LOC101216287 [Cucumis sativus] >XP_011650585.1 uncharacterized protein LOC101216287 [Cucumis sativus] >XP_031738802.1 uncharacterized protein LOC101216287 [Cucumis sativus] >KGN56285.1 hypothetical protein Csa_010233 [Cucumis sativus])

HSP 1 Score: 171.4 bits (433), Expect = 5.9e-39
Identity = 91/118 (77.12%), Postives = 101/118 (85.59%), Query Frame = 0 

Query: 1   MSHRNHDEEGAIELPAGKKDDVVDEDVEALWRAYRLVGVNPEDCINPRLSSPAAGDANLG 60
           MS RNH +E  +E PA K+D VVDED+E L RAYRL GVNPED INPRLSSPAAGDA+ G
Sbjct: 1   MSLRNHVDEIDVEHPADKEDGVVDEDMEVLQRAYRLAGVNPEDYINPRLSSPAAGDADPG 60

Query: 61  SDSDDLDDFELLRNIQSRFSIVADEQPLSTLPPVSPHEEEDEFEMLRSIQRRFAAYKS 119
           SDSDD+DDFELLR+IQ+RFSI+ADEQP ST  PVS  EEEDEFEMLRSIQRRFAAY+S
Sbjct: 61  SDSDDVDDFELLRDIQNRFSILADEQPQST--PVSADEEEDEFEMLRSIQRRFAAYES 116

[Close]
BLAST of HG10002357 vs. NCBI nr
Match: XP_023515735.1 (uncharacterized protein LOC111779809 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 168.3 bits (425), Expect = 5.0e-38
Identity = 88/124 (70.97%), Postives = 102/124 (82.26%), Query Frame = 0 

Query: 1   MSHRNHDEEGAIELPAGK---KDDVVDEDVEALWRAYRLVGVNPEDCINPRLSSPAAGDA 60
           MS R+H + G  ELPA +   +DD+VD+D+E L RA RL GVN ED INPRLS PAAGDA
Sbjct: 1   MSRRSHFDGGDKELPASEEDDEDDLVDDDMETLRRACRLAGVNHEDYINPRLSLPAAGDA 60

Query: 61  NLGSDSDDLDDFELLRNIQSRFSIVADEQPLSTLPPVSPHEEEDEFEMLRSIQRRFAAYK 120
           NLGSDSDD+DD ELLRNIQ+RFSI ADEQPLS LPPV+  EEED+FEMLRSIQRRFAAY+
Sbjct: 61  NLGSDSDDVDDLELLRNIQNRFSIAADEQPLSILPPVTADEEEDDFEMLRSIQRRFAAYE 120

Query: 121 SGLI 122
           S ++
Sbjct: 121 SDIL 124

[Close]
BLAST of HG10002357 vs. NCBI nr
Match: XP_023515736.1 (uncharacterized protein LOC111779809 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 168.3 bits (425), Expect = 5.0e-38
Identity = 88/124 (70.97%), Postives = 102/124 (82.26%), Query Frame = 0 

Query: 1   MSHRNHDEEGAIELPAGK---KDDVVDEDVEALWRAYRLVGVNPEDCINPRLSSPAAGDA 60
           MS R+H + G  ELPA +   +DD+VD+D+E L RA RL GVN ED INPRLS PAAGDA
Sbjct: 1   MSRRSHFDGGDKELPASEEDDEDDLVDDDMETLRRACRLAGVNHEDYINPRLSLPAAGDA 60

Query: 61  NLGSDSDDLDDFELLRNIQSRFSIVADEQPLSTLPPVSPHEEEDEFEMLRSIQRRFAAYK 120
           NLGSDSDD+DD ELLRNIQ+RFSI ADEQPLS LPPV+  EEED+FEMLRSIQRRFAAY+
Sbjct: 61  NLGSDSDDVDDLELLRNIQNRFSIAADEQPLSILPPVTADEEEDDFEMLRSIQRRFAAYE 120

Query: 121 SGLI 122
           S ++
Sbjct: 121 SDIL 124

[Close]
BLAST of HG10002357 vs. ExPASy TrEMBL
Match: A0A0A0L2R2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G113280 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.8e-39
Identity = 91/118 (77.12%), Postives = 101/118 (85.59%), Query Frame = 0 

Query: 1   MSHRNHDEEGAIELPAGKKDDVVDEDVEALWRAYRLVGVNPEDCINPRLSSPAAGDANLG 60
           MS RNH +E  +E PA K+D VVDED+E L RAYRL GVNPED INPRLSSPAAGDA+ G
Sbjct: 1   MSLRNHVDEIDVEHPADKEDGVVDEDMEVLQRAYRLAGVNPEDYINPRLSSPAAGDADPG 60

Query: 61  SDSDDLDDFELLRNIQSRFSIVADEQPLSTLPPVSPHEEEDEFEMLRSIQRRFAAYKS 119
           SDSDD+DDFELLR+IQ+RFSI+ADEQP ST  PVS  EEEDEFEMLRSIQRRFAAY+S
Sbjct: 61  SDSDDVDDFELLRDIQNRFSILADEQPQST--PVSADEEEDEFEMLRSIQRRFAAYES 116

[Close]
BLAST of HG10002357 vs. ExPASy TrEMBL
Match: A0A1S3BUG0 (snRNA-activating protein complex subunit 4 OS=Cucumis melo OX=3656 GN=LOC103493297 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 4.1e-38
Identity = 89/118 (75.42%), Postives = 99/118 (83.90%), Query Frame = 0 

Query: 1   MSHRNHDEEGAIELPAGKKDDVVDEDVEALWRAYRLVGVNPEDCINPRLSSPAAGDANLG 60
           MS  NH +E  +E  A K+D VVDED+E L RAYRLVGVNPED I+PR SS  AGDA+ G
Sbjct: 1   MSLHNHVDEIDVEHRADKEDGVVDEDMEVLQRAYRLVGVNPEDYIHPRSSSITAGDADPG 60

Query: 61  SDSDDLDDFELLRNIQSRFSIVADEQPLSTLPPVSPHEEEDEFEMLRSIQRRFAAYKS 119
           SDSDD+DDFELLR+IQ+RFSIVADEQPLSTL PVS  EEEDEFEMLRSIQRRFAAY+S
Sbjct: 61  SDSDDVDDFELLRDIQNRFSIVADEQPLSTLSPVSADEEEDEFEMLRSIQRRFAAYES 118

[Close]
BLAST of HG10002357 vs. ExPASy TrEMBL
Match: A0A5D3BLR5 (snRNA-activating protein complex subunit 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00240 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.6e-37
Identity = 88/118 (74.58%), Postives = 99/118 (83.90%), Query Frame = 0 

Query: 1   MSHRNHDEEGAIELPAGKKDDVVDEDVEALWRAYRLVGVNPEDCINPRLSSPAAGDANLG 60
           MS  NH +E  +E  A K+D VVDED+E L RAYRLVGVNPED I+PR SS  AGDA+ G
Sbjct: 39  MSLHNHVDEIDVEHRADKEDGVVDEDMEVLQRAYRLVGVNPEDYIHPRSSSITAGDADPG 98

Query: 61  SDSDDLDDFELLRNIQSRFSIVADEQPLSTLPPVSPHEEEDEFEMLRSIQRRFAAYKS 119
           SDS+D+DDFELLR+IQ+RFSIVADEQPLSTL PVS  EEEDEFEMLRSIQRRFAAY+S
Sbjct: 99  SDSNDVDDFELLRDIQNRFSIVADEQPLSTLSPVSADEEEDEFEMLRSIQRRFAAYES 156

[Close]
BLAST of HG10002357 vs. ExPASy TrEMBL
Match: A0A6J1E6Z7 (uncharacterized protein LOC111430000 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430000 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 3.5e-37
Identity = 86/124 (69.35%), Postives = 100/124 (80.65%), Query Frame = 0 

Query: 1   MSHRNHDEEGAIELPAGK---KDDVVDEDVEALWRAYRLVGVNPEDCINPRLSSPAAGDA 60
           MS R+H + G  ELPA +   +DD+VD+D+E L RA RL GVN ED INPRLS PAAGDA
Sbjct: 1   MSRRSHVDGGDKELPASEEDDEDDLVDDDMETLRRACRLAGVNHEDSINPRLSLPAAGDA 60

Query: 61  NLGSDSDDLDDFELLRNIQSRFSIVADEQPLSTLPPVSPHEEEDEFEMLRSIQRRFAAYK 120
           NLGSDSDD+DD ELLRNIQ+RFS  ADEQPLS LPPV+  EEED+FE LRSIQRRFAAY+
Sbjct: 61  NLGSDSDDVDDLELLRNIQNRFSTAADEQPLSILPPVTADEEEDDFETLRSIQRRFAAYE 120

Query: 121 SGLI 122
           S ++
Sbjct: 121 SDIL 124

[Close]
BLAST of HG10002357 vs. ExPASy TrEMBL
Match: A0A6J1E2J4 (uncharacterized protein LOC111430000 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430000 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 3.5e-37
Identity = 86/124 (69.35%), Postives = 100/124 (80.65%), Query Frame = 0 

Query: 1   MSHRNHDEEGAIELPAGK---KDDVVDEDVEALWRAYRLVGVNPEDCINPRLSSPAAGDA 60
           MS R+H + G  ELPA +   +DD+VD+D+E L RA RL GVN ED INPRLS PAAGDA
Sbjct: 1   MSRRSHVDGGDKELPASEEDDEDDLVDDDMETLRRACRLAGVNHEDSINPRLSLPAAGDA 60

Query: 61  NLGSDSDDLDDFELLRNIQSRFSIVADEQPLSTLPPVSPHEEEDEFEMLRSIQRRFAAYK 120
           NLGSDSDD+DD ELLRNIQ+RFS  ADEQPLS LPPV+  EEED+FE LRSIQRRFAAY+
Sbjct: 61  NLGSDSDDVDDLELLRNIQNRFSTAADEQPLSILPPVTADEEEDDFETLRSIQRRFAAYE 120

Query: 121 SGLI 122
           S ++
Sbjct: 121 SDIL 124

[Close]
BLAST of HG10002357 vs. TAIR 10
Match: AT3G18100.1 (myb domain protein 4r1 )

HSP 1 Score: 58.5 bits (140), Expect = 5.2e-09
Identity = 35/73 (47.95%), Postives = 50/73 (68.49%), Query Frame = 0 

Query: 48  RLSSPAAGDANLGSDSDDLDDFELLRNIQSRFSIVADEQPLSTLPPV--SPHEEEDEFEM 107
           R S P  G  +L SDS+  DDFE++R+I+S+ S+  D     +LPP+  S  EE+D FE 
Sbjct: 87  RSSGPPMG-LSLLSDSESEDDFEMIRSIKSQLSLSMD----VSLPPIGLSDDEEDDAFET 146

Query: 108 LRSIQRRFAAYKS 119
           LR+I+RRF+AYK+
Sbjct: 147 LRAIRRRFSAYKN 154

[Close]
BLAST of HG10002357 vs. TAIR 10
Match: AT3G18100.3 (myb domain protein 4r1 )

HSP 1 Score: 58.5 bits (140), Expect = 5.2e-09
Identity = 35/73 (47.95%), Postives = 50/73 (68.49%), Query Frame = 0 

Query: 48  RLSSPAAGDANLGSDSDDLDDFELLRNIQSRFSIVADEQPLSTLPPV--SPHEEEDEFEM 107
           R S P  G  +L SDS+  DDFE++R+I+S+ S+  D     +LPP+  S  EE+D FE 
Sbjct: 87  RSSGPPMG-LSLLSDSESEDDFEMIRSIKSQLSLSMD----VSLPPIGLSDDEEDDAFET 146

Query: 108 LRSIQRRFAAYKS 119
           LR+I+RRF+AYK+
Sbjct: 147 LRAIRRRFSAYKN 154

The following BLAST results are available for this feature:
BLAST of HG10002357 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038905712.11.3e-4380.17uncharacterized protein LOC120091681 isoform X1 [Benincasa hispida] >XP_03890571... [more]
XP_038905717.11.3e-4380.17uncharacterized protein LOC120091681 isoform X2 [Benincasa hispida] >XP_03890571... [more]
XP_011650584.15.9e-3977.12uncharacterized protein LOC101216287 [Cucumis sativus] >XP_011650585.1 uncharact... [more]
XP_023515735.15.0e-3870.97uncharacterized protein LOC111779809 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_023515736.15.0e-3870.97uncharacterized protein LOC111779809 isoform X2 [Cucurbita pepo subsp. pepo][more]
BLAST of HG10002357 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10002357 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2R22.8e-3977.12Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G113280 PE=4 SV=1[more]
A0A1S3BUG04.1e-3875.42snRNA-activating protein complex subunit 4 OS=Cucumis melo OX=3656 GN=LOC1034932... [more]
A0A5D3BLR51.6e-3774.58snRNA-activating protein complex subunit 4 OS=Cucumis melo var. makuwa OX=119469... [more]
A0A6J1E6Z73.5e-3769.35uncharacterized protein LOC111430000 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1E2J43.5e-3769.35uncharacterized protein LOC111430000 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
BLAST of HG10002357 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G18100.15.2e-0947.95myb domain protein 4r1 [more]
AT3G18100.35.2e-0947.95myb domain protein 4r1 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10002357.1HG10002357.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006357 regulation of transcription by RNA polymerase II
cellular_component GO:0005634 nucleus
molecular_function GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding