HG10002323 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10002323
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	60S ribosomal protein L28-2-like
Location	Chr11: 5562581 .. 5563964 (+)
RNA-Seq Expression	HG10002323
Synteny	HG10002323

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCGGTTCCAGGGCAACTGATTTGGGAGATTGTAAAAAGGAACAACTCTTTTTTGGTGAAGGAGTTTGGAAGGGGAACAGCCGGCGTTCAGTTCAGCAAAGAGCCCAACAATTTATACAATCTGAACTCCTACAAGCATTCTGGTAAGTCATCTTAAATCCTCTGATTAATGAGGTGTTCTTTTCATTTTAAGGGAAATGCTAGTCGGTTAAGTTTAGGGGATTTTGTTTGAATGTTGAGACAACCTAGAGACGGGATCAGAATTATATTATGTCGTTATTTGAAGGTTTGTATTTGATTTTTTGGGTACTGGAAAGAAGGGATTCAGTTGAGGAAATTGAAATATTAGAGTGTTGTCTGCTTTGCTTCCCTGAAGTTTTCTCAAATGGCCTAAACGCTGCTATTTTATTGTTTGAATTCTTCATGTTCTGATCAAGCGGTGGTTATCTAGATATATGTGTGTAGATGCTTAATGCATTCTTATTTGGTGGGAGGGGCCAACAAACTGATGTATACGATGTTGTAAATCATGTGAAATTTCGTTTCAGTTACTTTCCCGTTTCTGCAGCAACCGCCAGGGGAACAGACTAGAAAGGAGTGAATGATCACTGTCCTTGTTCAACTAATGGTTATGTCATTGGTCCTTTTATTGTTAGATGTGTTCAAGACATTGTTGTTTGGTGTTTGGGGTTACATGCTTGACAATTGATTCTGCAGCTTCCTTGACTAAATCCTCCCATTGCTAATCTGTTTGCATGAGAAAATATATCTGAGTATTGAATGCTTGATTTATATATTTGTGTGTATATTAGAATTTGATTTGTTTTTTATCTTTATTAGTAGTGGTGGGAGGAGTTTCAGGGGCTTTTTTTCTGTTCTTTATTTTTATTGTTTGTTTTAGATTGAAGATAATACTGCCAATAGTGAGTTCAGTTTATGTATAGGTTCAATAAGATTCTTGTGTTTTAGGTTTGGCCAACAAGAAAACTGTTACAATTCAACCTGGAGGCAAAGATCAATCCATTTTGCTTGCAACAACTAAGAGTAAGAAACAGAACAAGCCTGCTTCTTTGCTTCATAAATCTTTGATGAAGAAAGAGTTCCGCAGGATGGCAAAAGCTGTAACAAACCAGGTATAAGCAGCAGACCTTAATTATCTCTTGAGTACTCGTCCTATAAAATGTAATTAATACGGATGGAACAGTTGCATTAACTCCCCACTCAAATGATATTATCAGGTGGCAGATAACTACTACAGGCCAGATCTGAAGAAGGCTGCCCTAGCAAGATTGAGTGCTGTAAACAGGAGCCTTAAGGTTGCAAAGTCTGGGGTTAAGAAGAGGAACAGGCAAGCTTTGAAATCAAATGGCAGGAAGTGA

mRNA sequence

ATGGCGGCGGTTCCAGGGCAACTGATTTGGGAGATTGTAAAAAGGAACAACTCTTTTTTGGTGAAGGAGTTTGGAAGGGGAACAGCCGGCGTTCAGTTCAGCAAAGAGCCCAACAATTTATACAATCTGAACTCCTACAAGCATTCTGGTTTGGCCAACAAGAAAACTGTTACAATTCAACCTGGAGGCAAAGATCAATCCATTTTGCTTGCAACAACTAAGAGTAAGAAACAGAACAAGCCTGCTTCTTTGCTTCATAAATCTTTGATGAAGAAAGAGTTCCGCAGGATGGCAAAAGCTGTAACAAACCAGGTGGCAGATAACTACTACAGGCCAGATCTGAAGAAGGCTGCCCTAGCAAGATTGAGTGCTGTAAACAGGAGCCTTAAGGTTGCAAAGTCTGGGGTTAAGAAGAGGAACAGGCAAGCTTTGAAATCAAATGGCAGGAAGTGA

Coding sequence (CDS)

ATGGCGGCGGTTCCAGGGCAACTGATTTGGGAGATTGTAAAAAGGAACAACTCTTTTTTGGTGAAGGAGTTTGGAAGGGGAACAGCCGGCGTTCAGTTCAGCAAAGAGCCCAACAATTTATACAATCTGAACTCCTACAAGCATTCTGGTTTGGCCAACAAGAAAACTGTTACAATTCAACCTGGAGGCAAAGATCAATCCATTTTGCTTGCAACAACTAAGAGTAAGAAACAGAACAAGCCTGCTTCTTTGCTTCATAAATCTTTGATGAAGAAAGAGTTCCGCAGGATGGCAAAAGCTGTAACAAACCAGGTGGCAGATAACTACTACAGGCCAGATCTGAAGAAGGCTGCCCTAGCAAGATTGAGTGCTGTAAACAGGAGCCTTAAGGTTGCAAAGTCTGGGGTTAAGAAGAGGAACAGGCAAGCTTTGAAATCAAATGGCAGGAAGTGA

Protein sequence

MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQPGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALARLSAVNRSLKVAKSGVKKRNRQALKSNGRK

Homology

[Close]

BLAST of HG10002323 vs. NCBI nr
Match: XP_038886678.1 (60S ribosomal protein L28-2-like [Benincasa hispida])

HSP 1 Score: 277.7 bits (709), Expect = 5.9e-71
Identity = 147/150 (98.00%), Postives = 148/150 (98.67%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKE NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSILLATTKSKKQNKP+SLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKSNGRK 151
           RLSAVNRSLKVAKSGVKKRNRQALKSN RK
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSNVRK 150

[Close]

BLAST of HG10002323 vs. NCBI nr
Match: XP_008447584.1 (PREDICTED: 60S ribosomal protein L28-2-like [Cucumis melo] >XP_008447585.1 PREDICTED: 60S ribosomal protein L28-2-like [Cucumis melo] >XP_008447586.1 PREDICTED: 60S ribosomal protein L28-2-like [Cucumis melo] >KAA0061117.1 60S ribosomal protein L28-2-like [Cucumis melo var. makuwa] >TYK03788.1 60S ribosomal protein L28-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 277.3 bits (708), Expect = 7.6e-71
Identity = 145/146 (99.32%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSILLATTKSKKQNKP+SLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKS 147
           RLSAVNRSLKVAKSGVKKRNRQALKS
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKS 146

[Close]

BLAST of HG10002323 vs. NCBI nr
Match: XP_022148100.1 (60S ribosomal protein L28-2-like [Momordica charantia])

HSP 1 Score: 272.7 bits (696), Expect = 1.9e-69
Identity = 143/145 (98.62%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAV GQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVSGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALK 146
           RLSAVNRSLKVAKSGVKKRNRQAL+
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALR 145

[Close]

BLAST of HG10002323 vs. NCBI nr
Match: XP_022949503.1 (60S ribosomal protein L28-2-like [Cucurbita moschata] >XP_022998347.1 60S ribosomal protein L28-2-like [Cucurbita maxima] >XP_023523885.1 60S ribosomal protein L28-2-like [Cucurbita pepo subsp. pepo] >KAG7036445.1 60S ribosomal protein L28-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 272.3 bits (695), Expect = 2.5e-69
Identity = 143/150 (95.33%), Postives = 145/150 (96.67%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKE NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSIL ATTKSKKQNKP+SLLHKSLMKKEFRRMAKAVTNQV DNYYRPDLK+ ALA
Sbjct: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKSNGRK 151
           RLSAVNRSLKVAKSGVKKRNRQALKS GRK
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSRGRK 150

[Close]

BLAST of HG10002323 vs. NCBI nr
Match: KAG6606729.1 (hypothetical protein SDJN03_00071, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 272.3 bits (695), Expect = 2.5e-69
Identity = 143/150 (95.33%), Postives = 145/150 (96.67%), Query Frame = 0


Query: 1    MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
            MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKE NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1464 MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 1523

Query: 61   PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
            PGGKDQSIL ATTKSKKQNKP+SLLHKSLMKKEFRRMAKAVTNQV DNYYRPDLK+ ALA
Sbjct: 1524 PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 1583

Query: 121  RLSAVNRSLKVAKSGVKKRNRQALKSNGRK 151
            RLSAVNRSLKVAKSGVKKRNRQALKS GRK
Sbjct: 1584 RLSAVNRSLKVAKSGVKKRNRQALKSRGRK 1613

[Close]

BLAST of HG10002323 vs. ExPASy Swiss-Prot
Match: Q9M0E2 (60S ribosomal protein L28-2 OS=Arabidopsis thaliana OX=3702 GN=RPL28C PE=2 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 8.0e-55
Identity = 108/143 (75.52%), Postives = 124/143 (86.71%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVKRNN FLVK+FGRG A VQFSKE NNL N+NSYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
             GKDQ ++L TTK+K+QNKP   ++KS++KKEF RM+K V NQV DNYYRPDLKKAALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

[Close]

BLAST of HG10002323 vs. ExPASy Swiss-Prot
Match: O82204 (60S ribosomal protein L28-1 OS=Arabidopsis thaliana OX=3702 GN=RPL28A PE=1 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.2e-53
Identity = 107/143 (74.83%), Postives = 125/143 (87.41%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVK NN FLVK+FGRG + VQFSKE NNL N++SYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
              KDQ+++LATTK+KKQNKP   ++KS++KKEF RM+KAV NQV DNYYRPDLKKAALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of HG10002323 vs. ExPASy Swiss-Prot
Match: Q962T2 (60S ribosomal protein L28 OS=Spodoptera frugiperda OX=7108 GN=RpL28 PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 6.8e-14
Identity = 50/127 (39.37%), Postives = 68/127 (53.54%), Query Frame = 0


Query: 8   LIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQPGGKDQS 67
           L W I++ NN+FLVK   +      FSKEPNN+ NLNSY+++GL  KK V +      + 
Sbjct: 5   LNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLNSYRYNGLIQKKAVGVVENPDRKG 64

Query: 68  ILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALARLSAVNR 127
             +   K+K  NKPA    +   K   RR    V   +  N+YR DL KA L R SA+ R
Sbjct: 65  FTVVYKKAKATNKPAKNAVRRQFKAGARRSLYKVKRLLKANHYRTDLSKATLRRASAILR 124

Query: 128 SLKVAKS 135
           S +  K+
Sbjct: 125 SQRPIKA 128

[Close]

BLAST of HG10002323 vs. ExPASy Swiss-Prot
Match: O14069 (Probable 60S ribosomal protein L28e OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpl44 PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 8.9e-14
Identity = 48/135 (35.56%), Postives = 74/135 (54.81%), Query Frame = 0


Query: 3   AVPGQLIWEIVKRNNSFLVK--EFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 62
           +V   LIW++++ NN FLVK  EFG    G+QF++EP N+   N+ + SGL N K V +Q
Sbjct: 2   SVSNDLIWQVIRDNNRFLVKRPEFG----GIQFNREPVNVSGKNAQRFSGLCNDKAVGVQ 61

Query: 63  PGGKDQSILLATTKSKKQNKPASLLHKSLM-KKEFRRMAKAVTNQVADNYYRPDLKKAAL 122
                  +L+  T  K   KPA L  K ++     R+  K++  ++    YR DL K ++
Sbjct: 62  ANSPRGVVLITKTNPKNAQKPAKLFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSV 121

Query: 123 ARLSAVNRSLKVAKS 135
           AR SA+  S +  K+
Sbjct: 122 ARASAILSSQRPKKT 132

[Close]

BLAST of HG10002323 vs. ExPASy Swiss-Prot
Match: Q9VZS5 (60S ribosomal protein L28 OS=Drosophila melanogaster OX=7227 GN=RpL28 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.2e-12
Identity = 50/136 (36.76%), Postives = 71/136 (52.21%), Query Frame = 0


Query: 3   AVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQPG 62
           A    L W I++ NN+FL+K   +      FS EPNNL +++SY++SG+ +KKT+ + P 
Sbjct: 2   ATSSHLNWLIIRNNNAFLLK---KRDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPA 61

Query: 63  GKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALARL 122
              +       K K   +PA    +   K   RR  K + N +  + YR DL +AAL R 
Sbjct: 62  ADKKGFTAVLKKGKYAQRPAKNTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQAALRRA 121

Query: 123 SAVNRSLKVAKSGVKK 139
           SAV RS K A    KK
Sbjct: 122 SAVLRSQKPAPVKGKK 134

[Close]

BLAST of HG10002323 vs. ExPASy TrEMBL
Match: A0A1S3BIE3 (60S ribosomal protein L28-2-like OS=Cucumis melo OX=3656 GN=LOC103490001 PE=3 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 3.7e-71
Identity = 145/146 (99.32%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSILLATTKSKKQNKP+SLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKS 147
           RLSAVNRSLKVAKSGVKKRNRQALKS
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKS 146

[Close]

BLAST of HG10002323 vs. ExPASy TrEMBL
Match: A0A5D3BXS0 (60S ribosomal protein L28-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001760 PE=3 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 3.7e-71
Identity = 145/146 (99.32%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSILLATTKSKKQNKP+SLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKS 147
           RLSAVNRSLKVAKSGVKKRNRQALKS
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKS 146

[Close]

BLAST of HG10002323 vs. ExPASy TrEMBL
Match: A0A6J1D200 (60S ribosomal protein L28-2-like OS=Momordica charantia OX=3673 GN=LOC111016861 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 9.1e-70
Identity = 143/145 (98.62%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAV GQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVSGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALK 146
           RLSAVNRSLKVAKSGVKKRNRQAL+
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALR 145

[Close]

BLAST of HG10002323 vs. ExPASy TrEMBL
Match: A0A6J1K7P5 (60S ribosomal protein L28-2-like OS=Cucurbita maxima OX=3661 GN=LOC111493014 PE=3 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.2e-69
Identity = 143/150 (95.33%), Postives = 145/150 (96.67%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKE NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSIL ATTKSKKQNKP+SLLHKSLMKKEFRRMAKAVTNQV DNYYRPDLK+ ALA
Sbjct: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKSNGRK 151
           RLSAVNRSLKVAKSGVKKRNRQALKS GRK
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSRGRK 150

[Close]

BLAST of HG10002323 vs. ExPASy TrEMBL
Match: A0A6J1GC99 (60S ribosomal protein L28-2-like OS=Cucurbita moschata OX=3662 GN=LOC111452830 PE=3 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.2e-69
Identity = 143/150 (95.33%), Postives = 145/150 (96.67%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKE NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSIL ATTKSKKQNKP+SLLHKSLMKKEFRRMAKAVTNQV DNYYRPDLK+ ALA
Sbjct: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKSNGRK 151
           RLSAVNRSLKVAKSGVKKRNRQALKS GRK
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSRGRK 150

[Close]

BLAST of HG10002323 vs. TAIR 10
Match: AT4G29410.1 (Ribosomal L28e protein family )

HSP 1 Score: 214.5 bits (545), Expect = 5.7e-56
Identity = 108/143 (75.52%), Postives = 124/143 (86.71%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVKRNN FLVK+FGRG A VQFSKE NNL N+NSYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
             GKDQ ++L TTK+K+QNKP   ++KS++KKEF RM+K V NQV DNYYRPDLKKAALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

[Close]

BLAST of HG10002323 vs. TAIR 10
Match: AT4G29410.2 (Ribosomal L28e protein family )

HSP 1 Score: 214.5 bits (545), Expect = 5.7e-56
Identity = 108/143 (75.52%), Postives = 124/143 (86.71%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVKRNN FLVK+FGRG A VQFSKE NNL N+NSYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
             GKDQ ++L TTK+K+QNKP   ++KS++KKEF RM+K V NQV DNYYRPDLKKAALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

[Close]

BLAST of HG10002323 vs. TAIR 10
Match: AT2G19730.1 (Ribosomal L28e protein family )

HSP 1 Score: 210.7 bits (535), Expect = 8.2e-55
Identity = 107/143 (74.83%), Postives = 125/143 (87.41%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVK NN FLVK+FGRG + VQFSKE NNL N++SYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
              KDQ+++LATTK+KKQNKP   ++KS++KKEF RM+KAV NQV DNYYRPDLKKAALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of HG10002323 vs. TAIR 10
Match: AT2G19730.2 (Ribosomal L28e protein family )

HSP 1 Score: 210.7 bits (535), Expect = 8.2e-55
Identity = 107/143 (74.83%), Postives = 125/143 (87.41%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVK NN FLVK+FGRG + VQFSKE NNL N++SYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
              KDQ+++LATTK+KKQNKP   ++KS++KKEF RM+KAV NQV DNYYRPDLKKAALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of HG10002323 vs. TAIR 10
Match: AT2G19730.3 (Ribosomal L28e protein family )

HSP 1 Score: 210.7 bits (535), Expect = 8.2e-55
Identity = 107/143 (74.83%), Postives = 125/143 (87.41%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVK NN FLVK+FGRG + VQFSKE NNL N++SYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
              KDQ+++LATTK+KKQNKP   ++KS++KKEF RM+KAV NQV DNYYRPDLKKAALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

The following BLAST results are available for this feature:

BLAST of HG10002323 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886678.1	5.9e-71	98.00	60S ribosomal protein L28-2-like [Benincasa hispida]	[more]
XP_008447584.1	7.6e-71	99.32	PREDICTED: 60S ribosomal protein L28-2-like [Cucumis melo] >XP_008447585.1 PREDI...	[more]
XP_022148100.1	1.9e-69	98.62	60S ribosomal protein L28-2-like [Momordica charantia]	[more]
XP_022949503.1	2.5e-69	95.33	60S ribosomal protein L28-2-like [Cucurbita moschata] >XP_022998347.1 60S riboso...	[more]
KAG6606729.1	2.5e-69	95.33	hypothetical protein SDJN03_00071, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of HG10002323 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M0E2	8.0e-55	75.52	60S ribosomal protein L28-2 OS=Arabidopsis thaliana OX=3702 GN=RPL28C PE=2 SV=1	[more]
O82204	1.2e-53	74.83	60S ribosomal protein L28-1 OS=Arabidopsis thaliana OX=3702 GN=RPL28A PE=1 SV=1	[more]
Q962T2	6.8e-14	39.37	60S ribosomal protein L28 OS=Spodoptera frugiperda OX=7108 GN=RpL28 PE=2 SV=1	[more]
O14069	8.9e-14	35.56	Probable 60S ribosomal protein L28e OS=Schizosaccharomyces pombe (strain 972 / A...	[more]
Q9VZS5	2.2e-12	36.76	60S ribosomal protein L28 OS=Drosophila melanogaster OX=7227 GN=RpL28 PE=1 SV=1	[more]

BLAST of HG10002323 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BIE3	3.7e-71	99.32	60S ribosomal protein L28-2-like OS=Cucumis melo OX=3656 GN=LOC103490001 PE=3 SV...	[more]
A0A5D3BXS0	3.7e-71	99.32	60S ribosomal protein L28-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A6J1D200	9.1e-70	98.62	60S ribosomal protein L28-2-like OS=Momordica charantia OX=3673 GN=LOC111016861 ...	[more]
A0A6J1K7P5	1.2e-69	95.33	60S ribosomal protein L28-2-like OS=Cucurbita maxima OX=3661 GN=LOC111493014 PE=...	[more]
A0A6J1GC99	1.2e-69	95.33	60S ribosomal protein L28-2-like OS=Cucurbita moschata OX=3662 GN=LOC111452830 P...	[more]

BLAST of HG10002323 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29410.1	5.7e-56	75.52	Ribosomal L28e protein family	[more]
AT4G29410.2	5.7e-56	75.52	Ribosomal L28e protein family	[more]
AT2G19730.1	8.2e-55	74.83	Ribosomal L28e protein family	[more]
AT2G19730.2	8.2e-55	74.83	Ribosomal L28e protein family	[more]
AT2G19730.3	8.2e-55	74.83	Ribosomal L28e protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.390.110		coord: 6..134 e-value: 1.1E-45 score: 157.1
None	No IPR available	PANTHER	PTHR10544:SF19	60S RIBOSOMAL PROTEIN L28-1-LIKE	coord: 1..150
IPR029004	Ribosomal L28e/Mak16	PFAM	PF01778	Ribosomal_L28e	coord: 8..128 e-value: 3.6E-36 score: 124.4
IPR002672	Ribosomal protein L28e	PANTHER	PTHR10544	60S RIBOSOMAL PROTEIN L28	coord: 1..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10002323.1	HG10002323.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome