Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATTGGAAGAGTTGGAGAGGAGAAGGGAAGAATTGAAAGCCATGAGCGAGATGCAAGAAGCTAGAGCGAATTACTATGACGCGAAATTACACAGTATAATTGTCGCGTATTTCATCTGGGAACGCATTTTCTTCTTTGGCATCTCCAAGAAAACTAATTCTCATTCTAATTATTTTTCCGGCAACTGGTGGGTGATTCTTGCTCTAAGCTGTGTATACAACCTCGTTTACATGTTGCTTTATCTCGACGCCGGGTTGATGCTCTACCGGACGGAGCAACAACTTGATTTGATTCTCAAGAAACATGCTCAACTTTATCAACAAATTTGGAGAATCAAACAAGAAGCTGACTCCATTGATTCTTCATCGATGGAGGCCGGAGACGAGTCCAGCCATGGACTCCGACAGGAGGAGGATGTAATGCTAAAACTAAACTCAAGTTCAACTTTTAGAAGGAGTGGGGAGAGGAAATTTTATATGTCCACCATTTTTTGTGCTTTGGTTGGTGTTGCTTCCTTAGAATTATATGCTTGCAAGTCTATGCTCTGCTCCTATTCAGTTATCTAA
mRNA sequence
ATGGAATTGGAAGAGTTGGAGAGGAGAAGGGAAGAATTGAAAGCCATGAGCGAGATGCAAGAAGCTAGAGCGAATTACTATGACGCGAAATTACACAGTATAATTGTCGCGTATTTCATCTGGGAACGCATTTTCTTCTTTGGCATCTCCAAGAAAACTAATTCTCATTCTAATTATTTTTCCGGCAACTGGTGGGTGATTCTTGCTCTAAGCTGTGTATACAACCTCGTTTACATGTTGCTTTATCTCGACGCCGGGTTGATGCTCTACCGGACGGAGCAACAACTTGATTTGATTCTCAAGAAACATGCTCAACTTTATCAACAAATTTGGAGAATCAAACAAGAAGCTGACTCCATTGATTCTTCATCGATGGAGGCCGGAGACGAGTCCAGCCATGGACTCCGACAGGAGGAGGATGTAATGCTAAAACTAAACTCAAGTTCAACTTTTAGAAGGAGTGGGGAGAGGAAATTTTATATGTCCACCATTTTTTGTGCTTTGGTTGGTGTTGCTTCCTTAGAATTATATGCTTGCAAGTCTATGCTCTGCTCCTATTCAGTTATCTAA
Coding sequence (CDS)
ATGGAATTGGAAGAGTTGGAGAGGAGAAGGGAAGAATTGAAAGCCATGAGCGAGATGCAAGAAGCTAGAGCGAATTACTATGACGCGAAATTACACAGTATAATTGTCGCGTATTTCATCTGGGAACGCATTTTCTTCTTTGGCATCTCCAAGAAAACTAATTCTCATTCTAATTATTTTTCCGGCAACTGGTGGGTGATTCTTGCTCTAAGCTGTGTATACAACCTCGTTTACATGTTGCTTTATCTCGACGCCGGGTTGATGCTCTACCGGACGGAGCAACAACTTGATTTGATTCTCAAGAAACATGCTCAACTTTATCAACAAATTTGGAGAATCAAACAAGAAGCTGACTCCATTGATTCTTCATCGATGGAGGCCGGAGACGAGTCCAGCCATGGACTCCGACAGGAGGAGGATGTAATGCTAAAACTAAACTCAAGTTCAACTTTTAGAAGGAGTGGGGAGAGGAAATTTTATATGTCCACCATTTTTTGTGCTTTGGTTGGTGTTGCTTCCTTAGAATTATATGCTTGCAAGTCTATGCTCTGCTCCTATTCAGTTATCTAA
Protein sequence
MELEELERRREELKAMSEMQEARANYYDAKLHSIIVAYFIWERIFFFGISKKTNSHSNYFSGNWWVILALSCVYNLVYMLLYLDAGLMLYRTEQQLDLILKKHAQLYQQIWRIKQEADSIDSSSMEAGDESSHGLRQEEDVMLKLNSSSTFRRSGERKFYMSTIFCALVGVASLELYACKSMLCSYSVI
Homology
BLAST of HG10002273 vs. NCBI nr
Match:
KAE8650729.1 (hypothetical protein Csa_023412 [Cucumis sativus])
HSP 1 Score: 229.2 bits (583), Expect = 3.0e-56
Identity = 135/190 (71.05%), Postives = 150/190 (78.95%), Query Frame = 0
Query: 1 MELEELERRREELKAMSEMQEARANYYDAKLHSIIVAYFIWERIFFFGISKKTNSHSNYF 60
MELEELE+R EELKAMSE QEA ANYYD KLH+II AYFIWER F F IS KTNS NYF
Sbjct: 5 MELEELEKRMEELKAMSEKQEATANYYDTKLHTIIAAYFIWERAFCFAISNKTNS-PNYF 64
Query: 61 S-----GNWWVILALSCVYNLVYMLLYLDAGLMLYRTEQQLDLILKKHAQLYQQIWRIKQ 120
S NW +ILALS +Y+LVY+LLYLDA LMLYR+E + +LIL KHAQLY QI +IKQ
Sbjct: 65 SSLICHANWRLILALSSLYSLVYILLYLDAALMLYRSELKQNLILNKHAQLYHQISKIKQ 124
Query: 121 EADSIDSSSMEAGDESSHGLRQEEDVMLKLNSSSTFRRSGERKFYMSTIFCALVGVASLE 180
E +SIDSSSMEA EED++L +NSSSTFRRS ER FYMSTIFCALV VASLE
Sbjct: 125 EFNSIDSSSMEA----------EEDLILLINSSSTFRRSEERIFYMSTIFCALVCVASLE 183
Query: 181 LYACKSMLCS 186
LYACKS+LCS
Sbjct: 185 LYACKSILCS 183
BLAST of HG10002273 vs. NCBI nr
Match:
KAG6579352.1 (hypothetical protein SDJN03_23800, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 203.4 bits (516), Expect = 1.8e-48
Identity = 113/189 (59.79%), Postives = 143/189 (75.66%), Query Frame = 0
Query: 1 MELEELERRREELKAMSEMQEARANYYDAKLHSIIVAYFIWERIFFFGISKKT---NSHS 60
ME+EEL++ EE++ M E EA+ NYYD KLH+IIVAYF+WER+FFFGISKKT +
Sbjct: 1 MEVEELKKMMEEVQGMGEKVEAKVNYYDTKLHTIIVAYFVWERVFFFGISKKTFPSTIST 60
Query: 61 NYFSGNWWVILALSCVYNLVYMLLYLDAGLMLYRTEQQLDLILKKHAQLYQQIWRIKQEA 120
+GNWWVILALSC + VY+LL+ DA LMLYR E QL LIL+KHAQL + + IK+E
Sbjct: 61 LSCNGNWWVILALSCSCSFVYVLLFFDAALMLYRHENQLHLILQKHAQLCRHLLAIKEEQ 120
Query: 121 DSIDSSSMEAGDESSHGLRQEEDVMLKLNSSSTF--RRSGERKFYMSTIFCALVGVASLE 180
+S MEAGD++SHGL EE++ML +NS+S F RR ERK ++ TIFCA +GVASLE
Sbjct: 121 ADTKASLMEAGDQASHGLSLEEELML-INSTSPFRRRRPWERKVHVYTIFCAFIGVASLE 180
Query: 181 LYACKSMLC 185
LYACK++LC
Sbjct: 181 LYACKAVLC 188
BLAST of HG10002273 vs. NCBI nr
Match:
KAG6579345.1 (hypothetical protein SDJN03_23793, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 200.7 bits (509), Expect = 1.1e-47
Identity = 113/186 (60.75%), Postives = 140/186 (75.27%), Query Frame = 0
Query: 4 EELERRREELKAMSEMQEARANYYDAKLHSIIVAYFIWERIFFFGISKKT---NSHSNYF 63
EEL++ EE++ M E EA+ NYYD KLH+IIVAYF+WER+FFFGISKKT +
Sbjct: 8 EELKKMMEEVQGMGENVEAKVNYYDTKLHNIIVAYFVWERVFFFGISKKTFPPTISTLSC 67
Query: 64 SGNWWVILALSCVYNLVYMLLYLDAGLMLYRTEQQLDLILKKHAQLYQQIWRIKQEADSI 123
+GNWWVILALS + VY+LL+ D LMLYR E QL LIL+KHAQL + + IK+E I
Sbjct: 68 NGNWWVILALSSSCSFVYVLLFFDTALMLYRHENQLHLILQKHAQLCRHLLAIKEEQADI 127
Query: 124 DSSSMEAGDESSHGLRQEEDVMLKLNSSSTF--RRSGERKFYMSTIFCALVGVASLELYA 183
+S MEAGDE+SHGL EE++ML +NS+S F RR ERK Y+ TIFCAL+GVASLELYA
Sbjct: 128 KASLMEAGDEASHGLSLEEELML-INSTSPFRRRRPWERKVYVYTIFCALIGVASLELYA 187
Query: 184 CKSMLC 185
CK++LC
Sbjct: 188 CKAVLC 192
BLAST of HG10002273 vs. NCBI nr
Match:
KAG6579344.1 (hypothetical protein SDJN03_23792, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 181.8 bits (460), Expect = 5.5e-42
Identity = 109/195 (55.90%), Postives = 138/195 (70.77%), Query Frame = 0
Query: 1 MELEE-LERRREELKAMSEMQEARANYYDAKLHSIIVAYFIWERI-----FFFGISKKTN 60
ME+EE +E+R EE+K M E E R NYYD KLH+IIVAY +WER+ FFFG+S TN
Sbjct: 1 MEIEEQMEKRMEEVKGMWEKVEGRVNYYDTKLHAIIVAYLVWERVFFFFFFFFGVS-NTN 60
Query: 61 SHSNY----FSGNWWVILALSCVYNLVYMLLYLDAGLMLYRTEQQLDLILKKHAQLYQQI 120
SN +G WWVI+ALSC+ + VYMLL++DA LMLY + QL+LIL+ H QLY+Q+
Sbjct: 61 FASNISTLSCNGKWWVIVALSCLCSFVYMLLFVDAALMLYPHQNQLNLILQTHHQLYRQL 120
Query: 121 WRIKQEADSIDSSSMEAGDESSHGLRQEEDVMLKLNSSSTFRRSGERKFYMSTIFCALVG 180
IK S MEAGDE+SHGL EE++ML ++++ RR RKFY+ TIFCAL+
Sbjct: 121 LAIK-------DSLMEAGDEASHGLSLEEELMLINSNAAYRRRPWGRKFYVYTIFCALID 180
Query: 181 VASLELYACKSMLCS 186
VASLELYAC S+LCS
Sbjct: 181 VASLELYACNSVLCS 187
BLAST of HG10002273 vs. NCBI nr
Match:
XP_022157182.1 (uncharacterized protein LOC111023958 [Momordica charantia] >XP_022157183.1 uncharacterized protein LOC111023958 [Momordica charantia])
HSP 1 Score: 115.5 bits (288), Expect = 4.8e-22
Identity = 80/185 (43.24%), Postives = 115/185 (62.16%), Query Frame = 0
Query: 1 MELEELERRREELKAMSEMQEARANYYDAKLHSIIVAYFIWERIFFFGISKKTNSHSNYF 60
M L ELER+ EELK ++E QE+R YY+ K+ +I+ Y I+ R+FFFGIS+ + S++
Sbjct: 1 MALGELERKFEELKDINEKQESRVRYYETKVQNIVFGYLIFTRLFFFGISQ---TSSSFN 60
Query: 61 SGNWWVILALSCVYNLVYMLLYLDAGLMLYRTEQQLDLILKKHAQLYQQIWRIKQEADSI 120
+WWVILALS + + +Y LL+LDA ML+RT+ QLD+I K+ +L+QQI K + D
Sbjct: 61 CKDWWVILALSLLCSFIYFLLFLDAVAMLFRTQYQLDIICKELKELFQQILVSKNQDDV- 120
Query: 121 DSSSMEAGDESSHGLRQEEDVMLKLNSSSTFRRSGERKFYMSTIFCALVGVASLELYACK 180
SME G+ S + ML L+ FR G RK Y+ AL+ V ++ELY K
Sbjct: 121 -GLSMETGESSGGFEFGFHEKMLMLDH---FRIVG-RKVYIYFTVSALLAVTAIELYVSK 176
Query: 181 SMLCS 186
+LC+
Sbjct: 181 YVLCN 176
BLAST of HG10002273 vs. ExPASy TrEMBL
Match:
A0A0A0L822 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G484330 PE=4 SV=1)
HSP 1 Score: 229.2 bits (583), Expect = 1.5e-56
Identity = 135/190 (71.05%), Postives = 150/190 (78.95%), Query Frame = 0
Query: 1 MELEELERRREELKAMSEMQEARANYYDAKLHSIIVAYFIWERIFFFGISKKTNSHSNYF 60
MELEELE+R EELKAMSE QEA ANYYD KLH+II AYFIWER F F IS KTNS NYF
Sbjct: 1 MELEELEKRMEELKAMSEKQEATANYYDTKLHTIIAAYFIWERAFCFAISNKTNS-PNYF 60
Query: 61 S-----GNWWVILALSCVYNLVYMLLYLDAGLMLYRTEQQLDLILKKHAQLYQQIWRIKQ 120
S NW +ILALS +Y+LVY+LLYLDA LMLYR+E + +LIL KHAQLY QI +IKQ
Sbjct: 61 SSLICHANWRLILALSSLYSLVYILLYLDAALMLYRSELKQNLILNKHAQLYHQISKIKQ 120
Query: 121 EADSIDSSSMEAGDESSHGLRQEEDVMLKLNSSSTFRRSGERKFYMSTIFCALVGVASLE 180
E +SIDSSSMEA EED++L +NSSSTFRRS ER FYMSTIFCALV VASLE
Sbjct: 121 EFNSIDSSSMEA----------EEDLILLINSSSTFRRSEERIFYMSTIFCALVCVASLE 179
Query: 181 LYACKSMLCS 186
LYACKS+LCS
Sbjct: 181 LYACKSILCS 179
BLAST of HG10002273 vs. ExPASy TrEMBL
Match:
A0A6J1DSQ0 (uncharacterized protein LOC111023958 OS=Momordica charantia OX=3673 GN=LOC111023958 PE=4 SV=1)
HSP 1 Score: 115.5 bits (288), Expect = 2.3e-22
Identity = 80/185 (43.24%), Postives = 115/185 (62.16%), Query Frame = 0
Query: 1 MELEELERRREELKAMSEMQEARANYYDAKLHSIIVAYFIWERIFFFGISKKTNSHSNYF 60
M L ELER+ EELK ++E QE+R YY+ K+ +I+ Y I+ R+FFFGIS+ + S++
Sbjct: 1 MALGELERKFEELKDINEKQESRVRYYETKVQNIVFGYLIFTRLFFFGISQ---TSSSFN 60
Query: 61 SGNWWVILALSCVYNLVYMLLYLDAGLMLYRTEQQLDLILKKHAQLYQQIWRIKQEADSI 120
+WWVILALS + + +Y LL+LDA ML+RT+ QLD+I K+ +L+QQI K + D
Sbjct: 61 CKDWWVILALSLLCSFIYFLLFLDAVAMLFRTQYQLDIICKELKELFQQILVSKNQDDV- 120
Query: 121 DSSSMEAGDESSHGLRQEEDVMLKLNSSSTFRRSGERKFYMSTIFCALVGVASLELYACK 180
SME G+ S + ML L+ FR G RK Y+ AL+ V ++ELY K
Sbjct: 121 -GLSMETGESSGGFEFGFHEKMLMLDH---FRIVG-RKVYIYFTVSALLAVTAIELYVSK 176
Query: 181 SMLCS 186
+LC+
Sbjct: 181 YVLCN 176
BLAST of HG10002273 vs. ExPASy TrEMBL
Match:
A0A0A0KUT0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G562290 PE=4 SV=1)
HSP 1 Score: 112.5 bits (280), Expect = 2.0e-21
Identity = 66/185 (35.68%), Postives = 112/185 (60.54%), Query Frame = 0
Query: 3 LEELERRREELKAMSEMQEARANYYDAKLHSIIVAYFIWERIFFFGISKKTNSHSNYFSG 62
+EE+++ EEL AM++ Q+ R Y+ L +I +A+ +W R+FFF +S+ + + S
Sbjct: 6 IEEMQKVLEELNAMADTQKGRVENYETSLQNIAIAFLVWLRLFFFSLSQTSPNSSLLHCK 65
Query: 63 NWWVILALSCVYNLVYMLLYLDAGLMLYRTEQQLDLILKKHAQLYQQIW--RIKQEADSI 122
+WW++ AL+C +Y+LL++ LML RTE+QL +I ++ QL+QQIW R+++ I
Sbjct: 66 HWWLLFALTCFSAFLYILLFIHNSLMLSRTERQLHVISRQQIQLHQQIWMLRLQELPQMI 125
Query: 123 DSSSMEAGDESSHGLRQEEDVMLKLNSSSTFRRSGERKFYMSTIFCALVGVASLELYACK 182
+ M+ H + E + +STF ERK Y++ I C +G+ +LELYA +
Sbjct: 126 EPIIMD------HIINGE------MGRTSTF----ERKLYINCILCGFIGIVALELYASR 174
Query: 183 SMLCS 186
S+LC+
Sbjct: 186 SLLCN 174
BLAST of HG10002273 vs. ExPASy TrEMBL
Match:
A0A6J1DS87 (uncharacterized protein LOC111023927 OS=Momordica charantia OX=3673 GN=LOC111023927 PE=4 SV=1)
HSP 1 Score: 112.5 bits (280), Expect = 2.0e-21
Identity = 76/184 (41.30%), Postives = 110/184 (59.78%), Query Frame = 0
Query: 1 MELEELERRREELKAMSEMQEARANYYDAKLHSIIVAYFIWERIFFFGISKKTNSHSNYF 60
ME EL+R E LK + E QE+R Y++++ +I +AY IW R+FFF IS+ ++S
Sbjct: 1 MEFGELKRNFEALKDLVEKQESRVQYHESRAQNITMAYLIWGRLFFFAISQTSSSLLKCI 60
Query: 61 SGNWWVILALSCVYNLVYMLLYLDAGLMLYRTEQQLDLILKKHAQLYQQIWRIKQEADSI 120
+WW++L LS VY L +L+A MLYR + Q+D+I K+ A++ QQI + + D +
Sbjct: 61 --DWWMVLGLSVSCAFVYFLFFLEAVTMLYRVQHQMDIICKEQAEICQQILVARSQLDDV 120
Query: 121 DSSSMEAGDESSHGLRQEEDVMLKLNSSSTFRRSGERKFYMSTIFCALVGVASLELYACK 180
D +MEAGD SS G + V KL F R ERKFY+ AL+ V ++ELYAC
Sbjct: 121 D-LAMEAGD-SSDGFQFSFHV--KLLEYGAF-RIVERKFYICATVSALLAVTAIELYACS 177
Query: 181 SMLC 185
+ C
Sbjct: 181 WLYC 177
BLAST of HG10002273 vs. ExPASy TrEMBL
Match:
A0A5A7TMJ1 (WD repeat-containing protein 91-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00790 PE=4 SV=1)
HSP 1 Score: 102.1 bits (253), Expect = 2.7e-18
Identity = 68/184 (36.96%), Postives = 105/184 (57.07%), Query Frame = 0
Query: 2 ELEELERRREELKAMSEMQEARANYYDAKLHSIIVAYFIWERIFFFGISKKTNSHSNYFS 61
+L +L R LK +++ QE Y + KL ++++ Y W R+FFFG+S ++
Sbjct: 46 QLGDLRRNFVLLKDINDNQETSLRYCETKLQNVVLGYLSWGRLFFFGVS------FSFKC 105
Query: 62 GNWWVILALSCVYNLVYMLLYLDAGLMLYRTEQQLDLILKKHAQLYQQIWRIKQEADSID 121
+WWVILAL+ Y Y LL++DA +ML RT QLD+I K+ A++ QQI + Q D++
Sbjct: 106 KDWWVILALTLFYTFFYFLLFMDAVIMLSRTHDQLDIIRKELAEICQQI-LVAQNQDNV- 165
Query: 122 SSSMEAGDESSHGLRQEEDVMLKLNSSSTFRRSGERKFYMSTIFCALVGVASLELYACKS 181
SMEAG++S + M L+ RK Y+ I C L+ + ++ELYACK
Sbjct: 166 GLSMEAGEDSDGFELSFHERMFMLDQFRVVETG--RKVYIYFIVCPLLAITAIELYACKC 219
Query: 182 MLCS 186
+LC+
Sbjct: 226 LLCN 219
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAE8650729.1 | 3.0e-56 | 71.05 | hypothetical protein Csa_023412 [Cucumis sativus] | [more] |
KAG6579352.1 | 1.8e-48 | 59.79 | hypothetical protein SDJN03_23800, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG6579345.1 | 1.1e-47 | 60.75 | hypothetical protein SDJN03_23793, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG6579344.1 | 5.5e-42 | 55.90 | hypothetical protein SDJN03_23792, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_022157182.1 | 4.8e-22 | 43.24 | uncharacterized protein LOC111023958 [Momordica charantia] >XP_022157183.1 uncha... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0L822 | 1.5e-56 | 71.05 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G484330 PE=4 SV=1 | [more] |
A0A6J1DSQ0 | 2.3e-22 | 43.24 | uncharacterized protein LOC111023958 OS=Momordica charantia OX=3673 GN=LOC111023... | [more] |
A0A0A0KUT0 | 2.0e-21 | 35.68 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G562290 PE=4 SV=1 | [more] |
A0A6J1DS87 | 2.0e-21 | 41.30 | uncharacterized protein LOC111023927 OS=Momordica charantia OX=3673 GN=LOC111023... | [more] |
A0A5A7TMJ1 | 2.7e-18 | 36.96 | WD repeat-containing protein 91-like protein OS=Cucumis melo var. makuwa OX=1194... | [more] |
Match Name | E-value | Identity | Description | |