HG10002120 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10002120
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr11: 3609776 .. 3610018 (+)
RNA-Seq ExpressionHG10002120
SyntenyHG10002120
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCATCTCAAAAAGAATCATGTTCATCTTCATTGCCATCCTCTTGATCAACATCGACATGATTGAGACAACAAATGCAGCGAGAAAACTTCATTCCGATACTAAAAAAGTTGATGCTGACCAACGTCCTGGAGGTTGTAATCCCATAAGTCGTTGTAGAGGAATTGGTATCAAAGATGAGATTATTAGAGACATTAAGAAAAGGATGGTCCAGAAAGACAAGATTCGTCGAAGCTTATGA

mRNA sequence

ATGGCCATCTCAAAAAGAATCATGTTCATCTTCATTGCCATCCTCTTGATCAACATCGACATGATTGAGACAACAAATGCAGCGAGAAAACTTCATTCCGATACTAAAAAAGTTGATGCTGACCAACGTCCTGGAGGTTGTAATCCCATAAGTCGTTGTAGAGGAATTGGTATCAAAGATGAGATTATTAGAGACATTAAGAAAAGGATGGTCCAGAAAGACAAGATTCGTCGAAGCTTATGA

Coding sequence (CDS)

ATGGCCATCTCAAAAAGAATCATGTTCATCTTCATTGCCATCCTCTTGATCAACATCGACATGATTGAGACAACAAATGCAGCGAGAAAACTTCATTCCGATACTAAAAAAGTTGATGCTGACCAACGTCCTGGAGGTTGTAATCCCATAAGTCGTTGTAGAGGAATTGGTATCAAAGATGAGATTATTAGAGACATTAAGAAAAGGATGGTCCAGAAAGACAAGATTCGTCGAAGCTTATGA

Protein sequence

MAISKRIMFIFIAILLINIDMIETTNAARKLHSDTKKVDADQRPGGCNPISRCRGIGIKDEIIRDIKKRMVQKDKIRRSL
Homology
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BLAST of HG10002120 vs. NCBI nr
Match: KGN53002.2 (hypothetical protein Csa_014928 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 3.4e-09
Identity = 39/60 (65.00%), Postives = 43/60 (71.67%), Query Frame = 0 

Query: 22  IETTNAARKLHSDTKKVDAD------QRPGGCNPISRCRGIGIKDEIIRDIKKRMVQKDK 76
           I+ TNAARK+  D KK+D D      Q  GGCNPISRCRGIGIKDEIIRDIK+R   K K
Sbjct: 665 IDITNAARKVPLDKKKLDDDASLINTQGVGGCNPISRCRGIGIKDEIIRDIKRRGRTKRK 724

The following BLAST results are available for this feature:
BLAST of HG10002120 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53002.23.4e-0965.00hypothetical protein Csa_014928 [Cucumis sativus][more]
BLAST of HG10002120 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10002120 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10002120 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10002120.1HG10002120.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090630 activation of GTPase activity
biological_process GO:0006886 intracellular protein transport
molecular_function GO:0005096 GTPase activator activity