HG10002117 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10002117
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionPentatricopeptide repeat-containing protein
LocationChr11: 3569206 .. 3570301 (+)
RNA-Seq ExpressionHG10002117
SyntenyHG10002117
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATCTACTCTAATGGGGCGTCTTCAACTCCATTTTCCTCAATTGGGTCTTCGCCAAAACCTCACGAACTCAAGCCTCCATTGTTGTACGGCAGCTCCACCTCCAAATATCATCTGTGGCCTCAGAAAGGGCTTGAGGAAGCCCTTAGGGAGGTCAAGGGTGCCCTCCACTGAGGCTATTCAAGCAGTTCAGTCCCTCAAGCTCGCTAAATCCACCTCCAAAATGGAAGACGTTATCAATACCAAGCTCAGCAGATTGCTGAAAGCAGACTTGTTTGATGCTCTGACTGAATTACAGAGGCAAAATGAACTGGAATTATCGCTTCAGGTATTGCTTACTCCTGTTTATCGTCTGCAAATATTGTAAAAACTAGACATGTTACCCTTAAACTCTCTTAGTGGCTGGCTTTAGTTCAACTCAATAGCAGTGGTTGCTTAGAAATTCAGGTTTTTGGGTTCAATTACAACGATGAGTAAAAGCTTGATGGTGTGGTTGTAACTGTGTTTTTCCATTTTCTTTCGCTATCATTTATTTTTGTTTTAGTTTTTCTTTATAAGAACTGCAATCATTTGACATTCTGATCTAAAAAGTTTTACTGGAATGTCACATCTGATTCTCTTCTGCAGCCTATAGCATTCCTTCCACTTCAAATTTTTATTTCATCTTAACTGAATTCAGGCTTTAGGTCTTCAAATTTATGCAAAATGAAGAATGGTATGAGCCAGATTTAAGGTTGTACCATGGGATGATTCTGATGATGGGAAAGAACAAAATGATTGAAATGGCTGAAGAGGTCTTCCATAAGTTAAAAAAGGATGGGTTAGAACCAGACACAAGAGCTTTTAATGAGATGATGGGAGCATATTTGCAAGTGGACATGATCGAAAGAGCAGTTGAGACATATGAATTAATGAAAGCATCAGGTTGTACTCCAGATGAACTGACTTTCAAGATCTTGATCAAGAATCTCGAGAAATTTAGGGAAGAATTTGCTGCAGTAGTGAAGAAAGAATGTAATGAGTACTTGGATTCTCCTGAGAAGTTCCTCAACGATGTTGAACATAAACTGACGATGAAAGGTCAAATTCTTTAA

mRNA sequence

ATGAAATCTACTCTAATGGGGCGTCTTCAACTCCATTTTCCTCAATTGGGTCTTCGCCAAAACCTCACGAACTCAAGCCTCCATTGTTGTACGGCAGCTCCACCTCCAAATATCATCTGTGGCCTCAGAAAGGGCTTGAGGAAGCCCTTAGGGAGGTCAAGGGTGCCCTCCACTGAGGCTATTCAAGCAGTTCAGTCCCTCAAGCTCGCTAAATCCACCTCCAAAATGGAAGACGTTATCAATACCAAGCTCAGCAGATTGCTGAAAGCAGACTTGTTTGATGCTCTGACTGAATTACAGAGGCAAAATGAACTGGAATTATCGCTTCAGGTCTTCAAATTTATGCAAAATGAAGAATGGTATGAGCCAGATTTAAGGTTGTACCATGGGATGATTCTGATGATGGGAAAGAACAAAATGATTGAAATGGCTGAAGAGGTCTTCCATAAGTTAAAAAAGGATGGGTTAGAACCAGACACAAGAGCTTTTAATGAGATGATGGGAGCATATTTGCAAGTGGACATGATCGAAAGAGCAGTTGAGACATATGAATTAATGAAAGCATCAGGTTGTACTCCAGATGAACTGACTTTCAAGATCTTGATCAAGAATCTCGAGAAATTTAGGGAAGAATTTGCTGCAGTAGTGAAGAAAGAATGTAATGAGTACTTGGATTCTCCTGAGAAGTTCCTCAACGATGTTGAACATAAACTGACGATGAAAGGTCAAATTCTTTAA

Coding sequence (CDS)

ATGAAATCTACTCTAATGGGGCGTCTTCAACTCCATTTTCCTCAATTGGGTCTTCGCCAAAACCTCACGAACTCAAGCCTCCATTGTTGTACGGCAGCTCCACCTCCAAATATCATCTGTGGCCTCAGAAAGGGCTTGAGGAAGCCCTTAGGGAGGTCAAGGGTGCCCTCCACTGAGGCTATTCAAGCAGTTCAGTCCCTCAAGCTCGCTAAATCCACCTCCAAAATGGAAGACGTTATCAATACCAAGCTCAGCAGATTGCTGAAAGCAGACTTGTTTGATGCTCTGACTGAATTACAGAGGCAAAATGAACTGGAATTATCGCTTCAGGTCTTCAAATTTATGCAAAATGAAGAATGGTATGAGCCAGATTTAAGGTTGTACCATGGGATGATTCTGATGATGGGAAAGAACAAAATGATTGAAATGGCTGAAGAGGTCTTCCATAAGTTAAAAAAGGATGGGTTAGAACCAGACACAAGAGCTTTTAATGAGATGATGGGAGCATATTTGCAAGTGGACATGATCGAAAGAGCAGTTGAGACATATGAATTAATGAAAGCATCAGGTTGTACTCCAGATGAACTGACTTTCAAGATCTTGATCAAGAATCTCGAGAAATTTAGGGAAGAATTTGCTGCAGTAGTGAAGAAAGAATGTAATGAGTACTTGGATTCTCCTGAGAAGTTCCTCAACGATGTTGAACATAAACTGACGATGAAAGGTCAAATTCTTTAA

Protein sequence

MKSTLMGRLQLHFPQLGLRQNLTNSSLHCCTAAPPPNIICGLRKGLRKPLGRSRVPSTEAIQAVQSLKLAKSTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEWYEPDLRLYHGMILMMGKNKMIEMAEEVFHKLKKDGLEPDTRAFNEMMGAYLQVDMIERAVETYELMKASGCTPDELTFKILIKNLEKFREEFAAVVKKECNEYLDSPEKFLNDVEHKLTMKGQIL
Homology
[Close]
BLAST of HG10002117 vs. NCBI nr
Match: XP_038878176.1 (pentatricopeptide repeat-containing protein At1g62350-like [Benincasa hispida] >XP_038878177.1 pentatricopeptide repeat-containing protein At1g62350-like [Benincasa hispida])

HSP 1 Score: 451.8 bits (1161), Expect = 3.7e-123
Identity = 228/245 (93.06%), Postives = 235/245 (95.92%), Query Frame = 0 

Query: 1   MKSTLMGRLQLHFPQLGLRQNLTNSSLHCCTAAPPPNIICGLRKGLRKPLGRSRVPSTEA 60
           MKSTLMG LQ HFPQLGLRQ+LTN SLHCCTAAPPPNIICGLRKGLRKPLGRSRVPS EA
Sbjct: 1   MKSTLMGSLQFHFPQLGLRQDLTNPSLHCCTAAPPPNIICGLRKGLRKPLGRSRVPSIEA 60

Query: 61  IQAVQSLKLAKSTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW 120
           IQAVQSLKLAKSTSKMEDVIN+KLSRLLKADLFDALTELQRQNELELSLQVFKF+QNEEW
Sbjct: 61  IQAVQSLKLAKSTSKMEDVINSKLSRLLKADLFDALTELQRQNELELSLQVFKFIQNEEW 120

Query: 121 YEPDLRLYHGMILMMGKNKMIEMAEEVFHKLKKDGLEPDTRAFNEMMGAYLQVDMIERAV 180
           YEPDLRLYHGMILM GKNKMIEMAEE+FHKLKKDGLEPD RAFNEMMGAYLQVDM+ERAV
Sbjct: 121 YEPDLRLYHGMILMTGKNKMIEMAEEIFHKLKKDGLEPDIRAFNEMMGAYLQVDMVERAV 180

Query: 181 ETYELMKASGCTPDELTFKILIKNLEKFREEFAAVVKKECNEYLDSPEKFLNDVEHKLTM 240
           ETYELMKASGCTPD+LTFKILIKNLEKFREEFAAVVKKECN YLDSPEKFLNDVE K T 
Sbjct: 181 ETYELMKASGCTPDKLTFKILIKNLEKFREEFAAVVKKECNVYLDSPEKFLNDVEQKSTA 240

Query: 241 KGQIL 246
           KG+IL
Sbjct: 241 KGRIL 245

[Close]
BLAST of HG10002117 vs. NCBI nr
Match: KAA0044536.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 440.3 bits (1131), Expect = 1.1e-119
Identity = 220/242 (90.91%), Postives = 230/242 (95.04%), Query Frame = 0 

Query: 1   MKSTLMGRLQLHFPQLGLRQNLTNSSLHCCTAAPPPNIICGLRKGLRKPLGRSRVPSTEA 60
           MKSTLMGRLQLHFPQLGLRQNLTN SLHCCTAAPPPNIICGLRKGL+KPLGRSRVPS EA
Sbjct: 1   MKSTLMGRLQLHFPQLGLRQNLTNRSLHCCTAAPPPNIICGLRKGLKKPLGRSRVPSNEA 60

Query: 61  IQAVQSLKLAKSTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW 120
           IQAVQSLKLAK TSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW
Sbjct: 61  IQAVQSLKLAKCTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW 120

Query: 121 YEPDLRLYHGMILMMGKNKMIEMAEEVFHKLKKDGLEPDTRAFNEMMGAYLQVDMIERAV 180
           YEPDLRLYHGMI+MMGKNKMIEMAEEVFHKL+KDGLEPDTRAFNEMMGAYLQVDMIERA 
Sbjct: 121 YEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAA 180

Query: 181 ETYELMKASGCTPDELTFKILIKNLEKFREEFAAVVKKECNEYLDSPEKFLNDVEHKLTM 240
           +TY LM ASGCTPD+LTFKILIKNLEKF+EEFA VVKK+C+EYLD+P+KF ND   KLT 
Sbjct: 181 DTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAIVVKKDCHEYLDNPQKFFNDEGQKLTT 240

Query: 241 KG 243
           KG
Sbjct: 241 KG 242

[Close]
BLAST of HG10002117 vs. NCBI nr
Match: XP_008454079.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Cucumis melo] >TYK17047.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 438.0 bits (1125), Expect = 5.5e-119
Identity = 219/242 (90.50%), Postives = 229/242 (94.63%), Query Frame = 0 

Query: 1   MKSTLMGRLQLHFPQLGLRQNLTNSSLHCCTAAPPPNIICGLRKGLRKPLGRSRVPSTEA 60
           MKSTLMGRLQLHFP+LGLRQNLTN SLHCCTAAPPPNIICGLRKGL+KPLGRSRVPS EA
Sbjct: 1   MKSTLMGRLQLHFPELGLRQNLTNRSLHCCTAAPPPNIICGLRKGLKKPLGRSRVPSNEA 60

Query: 61  IQAVQSLKLAKSTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW 120
           IQAVQSLKLAK TSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW
Sbjct: 61  IQAVQSLKLAKCTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW 120

Query: 121 YEPDLRLYHGMILMMGKNKMIEMAEEVFHKLKKDGLEPDTRAFNEMMGAYLQVDMIERAV 180
           YEPDLRLYHGMI+MMGKNKMIEMAEEVFHKL+KDGLEPDTRAFNEMMGAYLQVDMIERA 
Sbjct: 121 YEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAA 180

Query: 181 ETYELMKASGCTPDELTFKILIKNLEKFREEFAAVVKKECNEYLDSPEKFLNDVEHKLTM 240
           +TY LM ASGCTPD+LTFKILIKNLEKF+EEFA VVKK+C EYLD+P+KF ND   KLT 
Sbjct: 181 DTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAIVVKKDCYEYLDNPQKFFNDEGQKLTT 240

Query: 241 KG 243
           KG
Sbjct: 241 KG 242

[Close]
BLAST of HG10002117 vs. NCBI nr
Match: XP_023527118.1 (pentatricopeptide repeat-containing protein At1g62350-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 429.1 bits (1102), Expect = 2.6e-116
Identity = 218/245 (88.98%), Postives = 230/245 (93.88%), Query Frame = 0 

Query: 1   MKSTLMGRLQLHFPQLGLRQNLTNSSLHCCTAAPPPNIICGLRKGLRKPLGRSRVPSTEA 60
           MKSTLMGRLQLHFPQLG RQNLTN +LHCCTA PPPNIICGLRKG RKPLG+SRVPSTE+
Sbjct: 1   MKSTLMGRLQLHFPQLGFRQNLTNPTLHCCTAGPPPNIICGLRKGQRKPLGKSRVPSTES 60

Query: 61  IQAVQSLKLAKSTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW 120
           IQAVQSLKLAKS SKMEDVIN+KLSRLLKADLFDAL ELQRQNELELSLQVFKFM+NEEW
Sbjct: 61  IQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALAELQRQNELELSLQVFKFMRNEEW 120

Query: 121 YEPDLRLYHGMILMMGKNKMIEMAEEVFHKLKKDGLEPDTRAFNEMMGAYLQVDMIERAV 180
           YEPDL LYH MI MMGKNKMIEMAEEVFH+LK+DGLEPDTRAFNEMMGAY+QVDM+ERAV
Sbjct: 121 YEPDLNLYHVMIQMMGKNKMIEMAEEVFHELKRDGLEPDTRAFNEMMGAYMQVDMVERAV 180

Query: 181 ETYELMKASGCTPDELTFKILIKNLEKFREEFAAVVKKECNEYLDSPEKFLNDVEHKLTM 240
           ETYELMKASGC PD+LTFKILIKNLE+FREEFAAVVKKEC E+LDSPEKFL DVE KL M
Sbjct: 181 ETYELMKASGCIPDKLTFKILIKNLERFREEFAAVVKKECAEFLDSPEKFLRDVEQKL-M 240

Query: 241 KGQIL 246
           K QIL
Sbjct: 241 KVQIL 244

[Close]
BLAST of HG10002117 vs. NCBI nr
Match: XP_022980054.1 (pentatricopeptide repeat-containing protein At1g62350-like [Cucurbita maxima])

HSP 1 Score: 427.2 bits (1097), Expect = 9.8e-116
Identity = 218/245 (88.98%), Postives = 228/245 (93.06%), Query Frame = 0 

Query: 1   MKSTLMGRLQLHFPQLGLRQNLTNSSLHCCTAAPPPNIICGLRKGLRKPLGRSRVPSTEA 60
           MKSTLMGRLQLH PQLG RQNLTN +LHCCTA PPPNIICGLRKG RKPLG+SRVPSTE+
Sbjct: 1   MKSTLMGRLQLHLPQLGFRQNLTNPTLHCCTAGPPPNIICGLRKGQRKPLGKSRVPSTES 60

Query: 61  IQAVQSLKLAKSTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW 120
           IQAVQSLKLAKS SKMEDVIN+KLSRLLKADLFDAL ELQRQNELELSLQVFKFM+NEEW
Sbjct: 61  IQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALAELQRQNELELSLQVFKFMRNEEW 120

Query: 121 YEPDLRLYHGMILMMGKNKMIEMAEEVFHKLKKDGLEPDTRAFNEMMGAYLQVDMIERAV 180
           YEPDL LYH MI MMGKNKMIEMAEEVFH  K+DGLEPDTRAFNEMMGAYLQVDM+ERAV
Sbjct: 121 YEPDLNLYHVMIQMMGKNKMIEMAEEVFHDFKRDGLEPDTRAFNEMMGAYLQVDMVERAV 180

Query: 181 ETYELMKASGCTPDELTFKILIKNLEKFREEFAAVVKKECNEYLDSPEKFLNDVEHKLTM 240
           ETYELMKASGCTPD+LTFKILIKNLE+FREEFAAVVKKEC E+LDSPEKFL DVE KL M
Sbjct: 181 ETYELMKASGCTPDKLTFKILIKNLERFREEFAAVVKKECAEFLDSPEKFLRDVEQKL-M 240

Query: 241 KGQIL 246
           K QIL
Sbjct: 241 KLQIL 244

[Close]
BLAST of HG10002117 vs. ExPASy Swiss-Prot
Match: Q9STF9 (Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8L PE=1 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.0e-19
Identity = 55/161 (34.16%), Postives = 98/161 (60.87%), Query Frame = 0 

Query: 47  RKPLGR-SRVPSTEAIQAVQSLK-LAKSTSKMEDVINTKLSRLLKADLFDALTELQRQNE 106
           R PL R  ++   EA+  +  LK L +   K++  I T + RLLK D+   + EL+RQ E
Sbjct: 63  RGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEE 122

Query: 107 LELSLQVFKFMQNEEWYEPDLRLYHGMILMMGKNKMIEMAEEVFHKLKKDGLEPDTRAFN 166
             L++++F+ +Q +EWY+PD+ +Y  +I+ + K+K ++ A  ++ K+KK+ L PD++ + 
Sbjct: 123 TALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTYT 182

Query: 167 EMMGAYLQVDMIERAVETYELMKASGCTPDELTFKILIKNL 206
           E++  +L+      A+  YE M  S   P+EL F++L+K L
Sbjct: 183 EVIRGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGL 223

[Close]
BLAST of HG10002117 vs. ExPASy Swiss-Prot
Match: Q1PFH7 (Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX=3702 GN=At1g62350 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.8e-17
Identity = 48/155 (30.97%), Postives = 92/155 (59.35%), Query Frame = 0 

Query: 57  STEAIQAVQSLKLAKSTS-KMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFM 116
           S E + A + LK  ++ S +++  I + +SRLLK+DL   L E QRQN++ L +++++ +
Sbjct: 2   SKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEVV 61

Query: 117 QNEEWYEPDLRLYHGMILMMGKNKMIEMAEEVFHKLKKDGLEPDTRAFNEMMGAYLQVDM 176
           + E WY PD+  Y  M++M+ +NK ++  ++V+  LKK+ +  D   F +++  +L  ++
Sbjct: 62  RREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNEL 121

Query: 177 IERAVETYELMKASGCTPDELTFKILIKNLEKFRE 211
              A+  Y  M+ S   P  L F++++K L  + E
Sbjct: 122 PLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPE 156

[Close]
BLAST of HG10002117 vs. ExPASy Swiss-Prot
Match: Q9LVW6 (Protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.8e-11
Identity = 58/180 (32.22%), Postives = 90/180 (50.00%), Query Frame = 0 

Query: 37  NIICGLRKGLRKPLGRSRVPSTEAIQAVQSLKLAKSTSKMEDVINTKLSRLLKADLFDAL 96
           +I CG R   R PL + R+ STEAIQ++QSLK A  T     +    L RL+K+DL   L
Sbjct: 30  SIRCGPRDN-RGPLLKGRILSTEAIQSIQSLKRAHRTGVSLSLTLRPLRRLIKSDLISVL 89

Query: 97  TELQRQNELELSLQVFKFMQNEEWYEP-DLRLYHGMILMMGKNKMIEMAEEVFHKLKKDG 156
            EL RQ+   L++ V   ++ E  Y P DL LY  ++  + +NK  +  + +  ++    
Sbjct: 90  RELLRQDYCTLAVHVLSTLRTE--YPPLDLVLYADIVNALTRNKEFDEIDRLIGEIDGID 149

Query: 157 LEPDTRAFNEMMGAYLQVDMIERAVETYELMKASG-----CTPDELTFKILIKNLEKFRE 211
              D +A  +++ A +  +  E  V  Y LM+ SG        DE   ++L K L +  E
Sbjct: 150 QRSDDKALAKLIRAVVGAERRESVVRVYTLMRESGWGSESWEADEYVAEVLSKGLLRLGE 206

[Close]
BLAST of HG10002117 vs. ExPASy Swiss-Prot
Match: Q9FKC3 (Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g48730 PE=2 SV=2)

HSP 1 Score: 67.4 bits (163), Expect = 2.6e-10
Identity = 43/153 (28.10%), Postives = 81/153 (52.94%), Query Frame = 0 

Query: 53  SRVPSTEAIQAVQSLKLAKSTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVF 112
           +++ S +AI  +   +  KS  + +      L R +   L + +T L+     E ++QVF
Sbjct: 82  TKIASRKAISIILRREATKSIIEKKKGSKKLLPRTVLESLHERITALR----WESAIQVF 141

Query: 113 KFMQNEEWYEPDLRLYHGMILMMGKNKMIEMAEEVFHKLKKDGLEPDTRAFNEMMGAYLQ 172
           + ++ + WY+P++ +Y  +I+M+GK K  E A E+F ++  +G   +   +  ++ AY +
Sbjct: 142 ELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSR 201

Query: 173 VDMIERAVETYELMKAS-GCTPDELTFKILIKN 205
               + A    E MK+S  C PD  T+ ILIK+
Sbjct: 202 SGRFDAAFTLLERMKSSHNCQPDVHTYSILIKS 230

[Close]
BLAST of HG10002117 vs. ExPASy Swiss-Prot
Match: A7LN87 (Pentatricopeptide repeat-containing protein PPR5, chloroplastic OS=Zea mays OX=4577 GN=PPR5 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.4e-10
Identity = 48/182 (26.37%), Postives = 95/182 (52.20%), Query Frame = 0 

Query: 57  STEAIQAVQSL--KLAKSTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKF 116
           + EA + V+SL  + A    ++  V++  +  +     F    EL R++     L VF++
Sbjct: 54  AAEAAELVRSLLRRTAGGKERLVPVLDRHVRVVRTEHCFLLFEELGRRDAWLQCLDVFRW 113

Query: 117 MQNEEWYEPDLRLYHGMILMMGKNKMIEMAEEVFHKLKKDGLEPDTRAFNEMMGAYL--- 176
           MQ + WY  D  +Y  +I +MG+   I MA  +F +++  G +PDT  +N ++GA+L   
Sbjct: 114 MQKQRWYVADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCKPDTSVYNSLIGAHLHSR 173

Query: 177 -QVDMIERAVETYELMKA-SGCTPDELTFKILIKNLEKFRE-EFAAVVKKECNEYLDSPE 231
            +   + +A+  +E MK    C P  +T+ IL++   +  + +   ++ K+ +E + SP+
Sbjct: 174 DKTKALAKALGYFEKMKCIERCQPTIVTYNILLRAFAQAGDTKQVDMLFKDLDESVVSPD 233

[Close]
BLAST of HG10002117 vs. ExPASy TrEMBL
Match: A0A5A7TQZ8 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G002830 PE=4 SV=1)

HSP 1 Score: 440.3 bits (1131), Expect = 5.4e-120
Identity = 220/242 (90.91%), Postives = 230/242 (95.04%), Query Frame = 0 

Query: 1   MKSTLMGRLQLHFPQLGLRQNLTNSSLHCCTAAPPPNIICGLRKGLRKPLGRSRVPSTEA 60
           MKSTLMGRLQLHFPQLGLRQNLTN SLHCCTAAPPPNIICGLRKGL+KPLGRSRVPS EA
Sbjct: 1   MKSTLMGRLQLHFPQLGLRQNLTNRSLHCCTAAPPPNIICGLRKGLKKPLGRSRVPSNEA 60

Query: 61  IQAVQSLKLAKSTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW 120
           IQAVQSLKLAK TSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW
Sbjct: 61  IQAVQSLKLAKCTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW 120

Query: 121 YEPDLRLYHGMILMMGKNKMIEMAEEVFHKLKKDGLEPDTRAFNEMMGAYLQVDMIERAV 180
           YEPDLRLYHGMI+MMGKNKMIEMAEEVFHKL+KDGLEPDTRAFNEMMGAYLQVDMIERA 
Sbjct: 121 YEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAA 180

Query: 181 ETYELMKASGCTPDELTFKILIKNLEKFREEFAAVVKKECNEYLDSPEKFLNDVEHKLTM 240
           +TY LM ASGCTPD+LTFKILIKNLEKF+EEFA VVKK+C+EYLD+P+KF ND   KLT 
Sbjct: 181 DTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAIVVKKDCHEYLDNPQKFFNDEGQKLTT 240

Query: 241 KG 243
           KG
Sbjct: 241 KG 242

[Close]
BLAST of HG10002117 vs. ExPASy TrEMBL
Match: A0A5D3CZ95 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001960 PE=4 SV=1)

HSP 1 Score: 438.0 bits (1125), Expect = 2.7e-119
Identity = 219/242 (90.50%), Postives = 229/242 (94.63%), Query Frame = 0 

Query: 1   MKSTLMGRLQLHFPQLGLRQNLTNSSLHCCTAAPPPNIICGLRKGLRKPLGRSRVPSTEA 60
           MKSTLMGRLQLHFP+LGLRQNLTN SLHCCTAAPPPNIICGLRKGL+KPLGRSRVPS EA
Sbjct: 1   MKSTLMGRLQLHFPELGLRQNLTNRSLHCCTAAPPPNIICGLRKGLKKPLGRSRVPSNEA 60

Query: 61  IQAVQSLKLAKSTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW 120
           IQAVQSLKLAK TSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW
Sbjct: 61  IQAVQSLKLAKCTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW 120

Query: 121 YEPDLRLYHGMILMMGKNKMIEMAEEVFHKLKKDGLEPDTRAFNEMMGAYLQVDMIERAV 180
           YEPDLRLYHGMI+MMGKNKMIEMAEEVFHKL+KDGLEPDTRAFNEMMGAYLQVDMIERA 
Sbjct: 121 YEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAA 180

Query: 181 ETYELMKASGCTPDELTFKILIKNLEKFREEFAAVVKKECNEYLDSPEKFLNDVEHKLTM 240
           +TY LM ASGCTPD+LTFKILIKNLEKF+EEFA VVKK+C EYLD+P+KF ND   KLT 
Sbjct: 181 DTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAIVVKKDCYEYLDNPQKFFNDEGQKLTT 240

Query: 241 KG 243
           KG
Sbjct: 241 KG 242

[Close]
BLAST of HG10002117 vs. ExPASy TrEMBL
Match: A0A1S3BX97 (pentatricopeptide repeat-containing protein At1g62350-like OS=Cucumis melo OX=3656 GN=LOC103494600 PE=4 SV=1)

HSP 1 Score: 438.0 bits (1125), Expect = 2.7e-119
Identity = 219/242 (90.50%), Postives = 229/242 (94.63%), Query Frame = 0 

Query: 1   MKSTLMGRLQLHFPQLGLRQNLTNSSLHCCTAAPPPNIICGLRKGLRKPLGRSRVPSTEA 60
           MKSTLMGRLQLHFP+LGLRQNLTN SLHCCTAAPPPNIICGLRKGL+KPLGRSRVPS EA
Sbjct: 1   MKSTLMGRLQLHFPELGLRQNLTNRSLHCCTAAPPPNIICGLRKGLKKPLGRSRVPSNEA 60

Query: 61  IQAVQSLKLAKSTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW 120
           IQAVQSLKLAK TSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW
Sbjct: 61  IQAVQSLKLAKCTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW 120

Query: 121 YEPDLRLYHGMILMMGKNKMIEMAEEVFHKLKKDGLEPDTRAFNEMMGAYLQVDMIERAV 180
           YEPDLRLYHGMI+MMGKNKMIEMAEEVFHKL+KDGLEPDTRAFNEMMGAYLQVDMIERA 
Sbjct: 121 YEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAA 180

Query: 181 ETYELMKASGCTPDELTFKILIKNLEKFREEFAAVVKKECNEYLDSPEKFLNDVEHKLTM 240
           +TY LM ASGCTPD+LTFKILIKNLEKF+EEFA VVKK+C EYLD+P+KF ND   KLT 
Sbjct: 181 DTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAIVVKKDCYEYLDNPQKFFNDEGQKLTT 240

Query: 241 KG 243
           KG
Sbjct: 241 KG 242

[Close]
BLAST of HG10002117 vs. ExPASy TrEMBL
Match: A0A6J1IY98 (pentatricopeptide repeat-containing protein At1g62350-like OS=Cucurbita maxima OX=3661 GN=LOC111479570 PE=4 SV=1)

HSP 1 Score: 427.2 bits (1097), Expect = 4.7e-116
Identity = 218/245 (88.98%), Postives = 228/245 (93.06%), Query Frame = 0 

Query: 1   MKSTLMGRLQLHFPQLGLRQNLTNSSLHCCTAAPPPNIICGLRKGLRKPLGRSRVPSTEA 60
           MKSTLMGRLQLH PQLG RQNLTN +LHCCTA PPPNIICGLRKG RKPLG+SRVPSTE+
Sbjct: 1   MKSTLMGRLQLHLPQLGFRQNLTNPTLHCCTAGPPPNIICGLRKGQRKPLGKSRVPSTES 60

Query: 61  IQAVQSLKLAKSTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW 120
           IQAVQSLKLAKS SKMEDVIN+KLSRLLKADLFDAL ELQRQNELELSLQVFKFM+NEEW
Sbjct: 61  IQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALAELQRQNELELSLQVFKFMRNEEW 120

Query: 121 YEPDLRLYHGMILMMGKNKMIEMAEEVFHKLKKDGLEPDTRAFNEMMGAYLQVDMIERAV 180
           YEPDL LYH MI MMGKNKMIEMAEEVFH  K+DGLEPDTRAFNEMMGAYLQVDM+ERAV
Sbjct: 121 YEPDLNLYHVMIQMMGKNKMIEMAEEVFHDFKRDGLEPDTRAFNEMMGAYLQVDMVERAV 180

Query: 181 ETYELMKASGCTPDELTFKILIKNLEKFREEFAAVVKKECNEYLDSPEKFLNDVEHKLTM 240
           ETYELMKASGCTPD+LTFKILIKNLE+FREEFAAVVKKEC E+LDSPEKFL DVE KL M
Sbjct: 181 ETYELMKASGCTPDKLTFKILIKNLERFREEFAAVVKKECAEFLDSPEKFLRDVEQKL-M 240

Query: 241 KGQIL 246
           K QIL
Sbjct: 241 KLQIL 244

[Close]
BLAST of HG10002117 vs. ExPASy TrEMBL
Match: A0A0A0KU23 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G011020 PE=4 SV=1)

HSP 1 Score: 421.0 bits (1081), Expect = 3.4e-114
Identity = 215/245 (87.76%), Postives = 226/245 (92.24%), Query Frame = 0 

Query: 1   MKSTLMGRLQLHFPQLGLRQNLTNSSLHCCTAAPPPNIICGLRKGLRKPLGRSRVPSTEA 60
           MKSTL+G LQLHF QLGLRQNLTN SL C TAAPPPNIICGLRKG  +PLG SRVPS EA
Sbjct: 1   MKSTLVGPLQLHFLQLGLRQNLTNRSLRCGTAAPPPNIICGLRKGSNRPLGLSRVPSNEA 60

Query: 61  IQAVQSLKLAKSTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW 120
           IQAVQSLKLAKSTSKMEDVINTKL RLLKADLFDAL+ELQRQNELELSLQVFKFMQNEEW
Sbjct: 61  IQAVQSLKLAKSTSKMEDVINTKLGRLLKADLFDALSELQRQNELELSLQVFKFMQNEEW 120

Query: 121 YEPDLRLYHGMILMMGKNKMIEMAEEVFHKLKKDGLEPDTRAFNEMMGAYLQVDMIERAV 180
           +EPDLRLYHGMI++MGKNKMIEMAEEVFHKL+KDGLEPDTRAFNEMMGAYLQVDMIERAV
Sbjct: 121 FEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAV 180

Query: 181 ETYELMKASGCTPDELTFKILIKNLEKFREEFAAVVKKECNEYLDSPEKFLNDVEHKLTM 240
           ETY LM ASGCTPDELTFKILIKNLEKFREEFA VVKK+CNEYLD+P+KF ND   KLT 
Sbjct: 181 ETYRLMIASGCTPDELTFKILIKNLEKFREEFAVVVKKDCNEYLDNPQKFFNDNGQKLTT 240

Query: 241 KGQIL 246
           K +IL
Sbjct: 241 KVRIL 245

[Close]
BLAST of HG10002117 vs. TAIR 10
Match: AT5G09320.1 (Vacuolar sorting protein 9 (VPS9) domain )

HSP 1 Score: 110.9 bits (276), Expect = 1.4e-24
Identity = 70/207 (33.82%), Postives = 115/207 (55.56%), Query Frame = 0 

Query: 47  RKPLGRSRVPSTEAIQAVQSLKLA----------------KSTSKMEDVINTKLSRLLKA 106
           RKPL R R+ S EAIQAVQ+LK A                 S++ ++ VI +K  RLLK 
Sbjct: 496 RKPLQRGRMLSIEAIQAVQALKRANPLLPPPPVPSTSTTSSSSALLDRVIISKFRRLLKF 555

Query: 107 DLFDALTELQRQNELELSLQVFKFMQNEEWYEPDLRLYHGMILMMGKNKMIEMAEEVFHK 166
           D+   L EL RQNE  L+L+VF+ ++ E WY+P +R+Y  MI +M  N ++E    ++  
Sbjct: 556 DMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVMADNSLMEEVNYLYSA 615

Query: 167 LKKD-GLEPDTRAFNEMMGAYLQVDMIERAVETYELMKASGCTPDELTFKILIKNLEKFR 226
           +K + GL  +   FN ++   L   + +  ++ Y  M++ G  PD  +F++L+  LE   
Sbjct: 616 MKSEKGLMAEIEWFNTLLTILLNHKLFDLVMDCYAFMQSIGYEPDRASFRVLVLGLESNG 675

Query: 227 E-EFAAVVKKECNEYLDSPEKFLNDVE 236
           E   +A+V+++ +EY     +F+ + E
Sbjct: 676 EMGLSAIVRQDAHEYYGESLEFIEEDE 702

[Close]
BLAST of HG10002117 vs. TAIR 10
Match: AT3G46870.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 98.6 bits (244), Expect = 7.4e-21
Identity = 55/161 (34.16%), Postives = 98/161 (60.87%), Query Frame = 0 

Query: 47  RKPLGR-SRVPSTEAIQAVQSLK-LAKSTSKMEDVINTKLSRLLKADLFDALTELQRQNE 106
           R PL R  ++   EA+  +  LK L +   K++  I T + RLLK D+   + EL+RQ E
Sbjct: 63  RGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEE 122

Query: 107 LELSLQVFKFMQNEEWYEPDLRLYHGMILMMGKNKMIEMAEEVFHKLKKDGLEPDTRAFN 166
             L++++F+ +Q +EWY+PD+ +Y  +I+ + K+K ++ A  ++ K+KK+ L PD++ + 
Sbjct: 123 TALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTYT 182

Query: 167 EMMGAYLQVDMIERAVETYELMKASGCTPDELTFKILIKNL 206
           E++  +L+      A+  YE M  S   P+EL F++L+K L
Sbjct: 183 EVIRGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGL 223

[Close]
BLAST of HG10002117 vs. TAIR 10
Match: AT1G62350.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 89.7 bits (221), Expect = 3.4e-18
Identity = 48/155 (30.97%), Postives = 92/155 (59.35%), Query Frame = 0 

Query: 57  STEAIQAVQSLKLAKSTS-KMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFM 116
           S E + A + LK  ++ S +++  I + +SRLLK+DL   L E QRQN++ L +++++ +
Sbjct: 2   SKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEVV 61

Query: 117 QNEEWYEPDLRLYHGMILMMGKNKMIEMAEEVFHKLKKDGLEPDTRAFNEMMGAYLQVDM 176
           + E WY PD+  Y  M++M+ +NK ++  ++V+  LKK+ +  D   F +++  +L  ++
Sbjct: 62  RREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNEL 121

Query: 177 IERAVETYELMKASGCTPDELTFKILIKNLEKFRE 211
              A+  Y  M+ S   P  L F++++K L  + E
Sbjct: 122 PLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPE 156

[Close]
BLAST of HG10002117 vs. TAIR 10
Match: AT3G27750.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: Vacuolar sorting protein 9 (VPS9) domain (TAIR:AT5G09320.1); Has 106 Blast hits to 106 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 71.2 bits (173), Expect = 1.3e-12
Identity = 58/180 (32.22%), Postives = 90/180 (50.00%), Query Frame = 0 

Query: 37  NIICGLRKGLRKPLGRSRVPSTEAIQAVQSLKLAKSTSKMEDVINTKLSRLLKADLFDAL 96
           +I CG R   R PL + R+ STEAIQ++QSLK A  T     +    L RL+K+DL   L
Sbjct: 30  SIRCGPRDN-RGPLLKGRILSTEAIQSIQSLKRAHRTGVSLSLTLRPLRRLIKSDLISVL 89

Query: 97  TELQRQNELELSLQVFKFMQNEEWYEP-DLRLYHGMILMMGKNKMIEMAEEVFHKLKKDG 156
            EL RQ+   L++ V   ++ E  Y P DL LY  ++  + +NK  +  + +  ++    
Sbjct: 90  RELLRQDYCTLAVHVLSTLRTE--YPPLDLVLYADIVNALTRNKEFDEIDRLIGEIDGID 149

Query: 157 LEPDTRAFNEMMGAYLQVDMIERAVETYELMKASG-----CTPDELTFKILIKNLEKFRE 211
              D +A  +++ A +  +  E  V  Y LM+ SG        DE   ++L K L +  E
Sbjct: 150 QRSDDKALAKLIRAVVGAERRESVVRVYTLMRESGWGSESWEADEYVAEVLSKGLLRLGE 206

[Close]
BLAST of HG10002117 vs. TAIR 10
Match: AT5G48730.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 67.4 bits (163), Expect = 1.8e-11
Identity = 43/153 (28.10%), Postives = 81/153 (52.94%), Query Frame = 0 

Query: 53  SRVPSTEAIQAVQSLKLAKSTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVF 112
           +++ S +AI  +   +  KS  + +      L R +   L + +T L+     E ++QVF
Sbjct: 82  TKIASRKAISIILRREATKSIIEKKKGSKKLLPRTVLESLHERITALR----WESAIQVF 141

Query: 113 KFMQNEEWYEPDLRLYHGMILMMGKNKMIEMAEEVFHKLKKDGLEPDTRAFNEMMGAYLQ 172
           + ++ + WY+P++ +Y  +I+M+GK K  E A E+F ++  +G   +   +  ++ AY +
Sbjct: 142 ELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSR 201

Query: 173 VDMIERAVETYELMKAS-GCTPDELTFKILIKN 205
               + A    E MK+S  C PD  T+ ILIK+
Sbjct: 202 SGRFDAAFTLLERMKSSHNCQPDVHTYSILIKS 230

The following BLAST results are available for this feature:
BLAST of HG10002117 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038878176.13.7e-12393.06pentatricopeptide repeat-containing protein At1g62350-like [Benincasa hispida] >... [more]
KAA0044536.11.1e-11990.91pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa][more]
XP_008454079.15.5e-11990.50PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Cucumis m... [more]
XP_023527118.12.6e-11688.98pentatricopeptide repeat-containing protein At1g62350-like [Cucurbita pepo subsp... [more]
XP_022980054.19.8e-11688.98pentatricopeptide repeat-containing protein At1g62350-like [Cucurbita maxima][more]
BLAST of HG10002117 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9STF91.0e-1934.16Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702... [more]
Q1PFH74.8e-1730.97Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX... [more]
Q9LVW61.8e-1132.22Protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=T... [more]
Q9FKC32.6e-1028.10Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidop... [more]
A7LN874.4e-1026.37Pentatricopeptide repeat-containing protein PPR5, chloroplastic OS=Zea mays OX=4... [more]
BLAST of HG10002117 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TQZ85.4e-12090.91Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A5D3CZ952.7e-11990.50Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3BX972.7e-11990.50pentatricopeptide repeat-containing protein At1g62350-like OS=Cucumis melo OX=36... [more]
A0A6J1IY984.7e-11688.98pentatricopeptide repeat-containing protein At1g62350-like OS=Cucurbita maxima O... [more]
A0A0A0KU233.4e-11487.76Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G011020 PE=4 SV=1[more]
BLAST of HG10002117 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G09320.11.4e-2433.82Vacuolar sorting protein 9 (VPS9) domain [more]
AT3G46870.17.4e-2134.16Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G62350.13.4e-1830.97Pentatricopeptide repeat (PPR) superfamily protein [more]
AT3G27750.11.3e-1232.22FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT5G48730.11.8e-1128.10Pentatricopeptide repeat (PPR) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 127..160
e-value: 5.8E-6
score: 24.2
coord: 162..195
e-value: 1.3E-6
score: 26.2
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 158..205
e-value: 6.6E-11
score: 42.3
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 128..156
e-value: 0.006
score: 16.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 124..158
score: 10.095415
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 159..193
score: 10.731171
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 56..224
e-value: 1.6E-45
score: 157.0
NoneNo IPR availablePANTHERPTHR47594:SF5PPR CONTAINING PLANT-LIKE PROTEINcoord: 4..237
IPR044190Protein THYLAKOID ASSEMBLY 8-likePANTHERPTHR47594PPR CONTAINING PLANT-LIKE PROTEINcoord: 4..237

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10002117.1HG10002117.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009658 chloroplast organization
biological_process GO:0000373 Group II intron splicing
molecular_function GO:0005515 protein binding
molecular_function GO:0003723 RNA binding