HG10001995 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10001995
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	D-2-hydroxyglutarate dehydrogenase, mitochondrial
Location	Chr11: 2478966 .. 2479720 (+)
RNA-Seq Expression	HG10001995
Synteny	HG10001995

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCACGACGACGATGAGGAAGAAATCTGCCAGTTTTCTCTTCAGATACTCTCGATTTTTTCACTCGGATCAGCCTTTGAATCTTAATCATAAGAATTCGCTTCTCCGTTCAGGTTTTCTTTCACGTCTGGCTGATTTCAATTCTAGTTTGGTTTTTCAGGCGGATACATCTGTTTGATTGATATACATTACTAGTTTGTTTACCTGGTTTTCATTCTCCGTCATTTGTAGGAACTTCCTTGTGCGCGCCAATTTCAAAATATTTTGGTTCCATTCCGGGATGCAGAAAAGCTTTTCAGGCTTCTGCGATCAATTATTTGAGAATGCCTTCCGGATTTCAGTTCAGACGCTTTACTTCATTATCTTCGGGGGTTCAGAGAAATCCTTCATTTTCGAGGTTAAATTCTGATGATATCGACTTTTTCCGGAGTATTTTGGGGGAGAAAAATGTAGTTCAGGATGAGGATAGGCTTTTGGATGCAAATACAGATTGGTTGCGGAAGTACAGAGGGTCGAGTAAGCTTTTACTACAACCTAGGAGCACAGAAGAGGTTTAATTCTTCTTCATTGAGTTGAGGCTATTTTCTTTTCGTTCTTTTGTTGAAGTCAAAGTTCTGAAGCTAATGGCTAATGGCTTGAATTATAGATTTTTGAAATATAGTGAAAAGTGATGCCATGGTCTACTTAATCTGGTAGAAGACATACATTTTAAATTTTTAGGTAGCTCATGTCCTGCCTGACTCTGGCTCTTGA

mRNA sequence

ATGATCACGACGACGATGAGGAAGAAATCTGCCAGTTTTCTCTTCAGATACTCTCGATTTTTTCACTCGGATCAGCCTTTGAATCTTAATCATAAGAATTCGCTTCTCCGTTCAGGAACTTCCTTGTGCGCGCCAATTTCAAAATATTTTGGTTCCATTCCGGGATGCAGAAAAGCTTTTCAGGCTTCTGCGATCAATTATTTGAGAATGCCTTCCGGATTTCAGTTCAGACGCTTTACTTCATTATCTTCGGGGGTTCAGAGAAATCCTTCATTTTCGAGGTTAAATTCTGATGATATCGACTTTTTCCGGAGTATTTTGGGGGAGAAAAATGTAGTTCAGGATGAGGATAGGCTTTTGGATGCAAATACAGATTGGTTGCGGAAGTACAGAGGGTCGAGTAAGCTTTTACTACAACCTAGGAGCACAGAAGAGGTAGCTCATGTCCTGCCTGACTCTGGCTCTTGA

Coding sequence (CDS)

ATGATCACGACGACGATGAGGAAGAAATCTGCCAGTTTTCTCTTCAGATACTCTCGATTTTTTCACTCGGATCAGCCTTTGAATCTTAATCATAAGAATTCGCTTCTCCGTTCAGGAACTTCCTTGTGCGCGCCAATTTCAAAATATTTTGGTTCCATTCCGGGATGCAGAAAAGCTTTTCAGGCTTCTGCGATCAATTATTTGAGAATGCCTTCCGGATTTCAGTTCAGACGCTTTACTTCATTATCTTCGGGGGTTCAGAGAAATCCTTCATTTTCGAGGTTAAATTCTGATGATATCGACTTTTTCCGGAGTATTTTGGGGGAGAAAAATGTAGTTCAGGATGAGGATAGGCTTTTGGATGCAAATACAGATTGGTTGCGGAAGTACAGAGGGTCGAGTAAGCTTTTACTACAACCTAGGAGCACAGAAGAGGTAGCTCATGTCCTGCCTGACTCTGGCTCTTGA

Protein sequence

MITTTMRKKSASFLFRYSRFFHSDQPLNLNHKNSLLRSGTSLCAPISKYFGSIPGCRKAFQASAINYLRMPSGFQFRRFTSLSSGVQRNPSFSRLNSDDIDFFRSILGEKNVVQDEDRLLDANTDWLRKYRGSSKLLLQPRSTEEVAHVLPDSGS

Homology

[Close]

BLAST of HG10001995 vs. NCBI nr
Match: XP_038896937.1 (D-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X1 [Benincasa hispida])

HSP 1 Score: 268.9 bits (686), Expect = 2.8e-68
Identity = 133/150 (88.67%), Postives = 140/150 (93.33%), Query Frame = 0


Query: 1   MITTTMRKKSASFLFRYSRFFHSDQPLNLNHKNSLLRSGTSLCAPISKYFGSIPGCRKAF 60
           M+TTTMRKKSASFLFRYSR FHSDQPL+LNH NSLLRSGTSLC PIS+Y GS  GCRKAF
Sbjct: 2   MMTTTMRKKSASFLFRYSRIFHSDQPLSLNHNNSLLRSGTSLCMPISRYIGSFRGCRKAF 61

Query: 61  QASAINYLRMPSGFQFRRFTSLSSGVQRNPSFSRLNSDDIDFFRSILGEKNVVQDEDRLL 120
           QASAIN+ RMP GFQFRRFTSLSS VQRNPSFSRLNSDDIDFFRSILGEKNVVQDEDRLL
Sbjct: 62  QASAINHFRMPCGFQFRRFTSLSSVVQRNPSFSRLNSDDIDFFRSILGEKNVVQDEDRLL 121

Query: 121 DANTDWLRKYRGSSKLLLQPRSTEEVAHVL 151
           DANTDWLRKYRG+SKLLLQPRSTEEV+ +L
Sbjct: 122 DANTDWLRKYRGTSKLLLQPRSTEEVSQIL 151

[Close]

BLAST of HG10001995 vs. NCBI nr
Match: XP_038896946.1 (D-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X2 [Benincasa hispida])

HSP 1 Score: 268.9 bits (686), Expect = 2.8e-68
Identity = 133/150 (88.67%), Postives = 140/150 (93.33%), Query Frame = 0


Query: 1   MITTTMRKKSASFLFRYSRFFHSDQPLNLNHKNSLLRSGTSLCAPISKYFGSIPGCRKAF 60
           M+TTTMRKKSASFLFRYSR FHSDQPL+LNH NSLLRSGTSLC PIS+Y GS  GCRKAF
Sbjct: 2   MMTTTMRKKSASFLFRYSRIFHSDQPLSLNHNNSLLRSGTSLCMPISRYIGSFRGCRKAF 61

Query: 61  QASAINYLRMPSGFQFRRFTSLSSGVQRNPSFSRLNSDDIDFFRSILGEKNVVQDEDRLL 120
           QASAIN+ RMP GFQFRRFTSLSS VQRNPSFSRLNSDDIDFFRSILGEKNVVQDEDRLL
Sbjct: 62  QASAINHFRMPCGFQFRRFTSLSSVVQRNPSFSRLNSDDIDFFRSILGEKNVVQDEDRLL 121

Query: 121 DANTDWLRKYRGSSKLLLQPRSTEEVAHVL 151
           DANTDWLRKYRG+SKLLLQPRSTEEV+ +L
Sbjct: 122 DANTDWLRKYRGTSKLLLQPRSTEEVSQIL 151

[Close]

BLAST of HG10001995 vs. NCBI nr
Match: XP_004146548.2 (D-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X1 [Cucumis sativus] >KAE8649180.1 hypothetical protein Csa_015161 [Cucumis sativus])

HSP 1 Score: 253.1 bits (645), Expect = 1.6e-63
Identity = 126/150 (84.00%), Postives = 135/150 (90.00%), Query Frame = 0


Query: 1   MITTTMRKKSASFLFRYSRFFHSDQPLNLNHKNSLLRSGTSLCAPISKYFGSIPGCRKAF 60
           M+TTTMRKKSA FLF YSR FHS QPLNL+H NSLLRSGTS C PIS+YFGSI  CRKAF
Sbjct: 2   MMTTTMRKKSAGFLFAYSRIFHSYQPLNLHHNNSLLRSGTSFCTPISRYFGSIRECRKAF 61

Query: 61  QASAINYLRMPSGFQFRRFTSLSSGVQRNPSFSRLNSDDIDFFRSILGEKNVVQDEDRLL 120
           QASAIN+  +PSGF+FRR  SLSS VQRNPSFSRLNSDDI+FFRSILGEKNVVQDEDRLL
Sbjct: 62  QASAINHFEVPSGFRFRRIASLSSLVQRNPSFSRLNSDDIEFFRSILGEKNVVQDEDRLL 121

Query: 121 DANTDWLRKYRGSSKLLLQPRSTEEVAHVL 151
           DANTDWLRKYRGSSKLLLQPRSTEEV+ +L
Sbjct: 122 DANTDWLRKYRGSSKLLLQPRSTEEVSQIL 151

[Close]

BLAST of HG10001995 vs. NCBI nr
Match: XP_008452115.1 (PREDICTED: D-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X1 [Cucumis melo])

HSP 1 Score: 246.9 bits (629), Expect = 1.1e-61
Identity = 123/150 (82.00%), Postives = 133/150 (88.67%), Query Frame = 0


Query: 1   MITTTMRKKSASFLFRYSRFFHSDQPLNLNHKNSLLRSGTSLCAPISKYFGSIPGCRKAF 60
           M+  TMRKKS  FLF YSR FHS QPLNL+H NSLLRSGTS C PIS+YFGSI  CRKAF
Sbjct: 5   MMMATMRKKSPGFLFVYSRIFHSHQPLNLHHNNSLLRSGTSFCTPISRYFGSIRECRKAF 64

Query: 61  QASAINYLRMPSGFQFRRFTSLSSGVQRNPSFSRLNSDDIDFFRSILGEKNVVQDEDRLL 120
           QASAIN+ ++PSGF+FR  TSLSS VQRNPSFSRLNSDDI+FFRSILGEKNVVQDEDRLL
Sbjct: 65  QASAINHFKVPSGFRFRCITSLSSVVQRNPSFSRLNSDDIEFFRSILGEKNVVQDEDRLL 124

Query: 121 DANTDWLRKYRGSSKLLLQPRSTEEVAHVL 151
           DANTDWLRKYRGSSKLLLQPRSTEEV+ +L
Sbjct: 125 DANTDWLRKYRGSSKLLLQPRSTEEVSQIL 154

[Close]

BLAST of HG10001995 vs. NCBI nr
Match: XP_016901179.1 (PREDICTED: D-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X2 [Cucumis melo])

HSP 1 Score: 246.9 bits (629), Expect = 1.1e-61
Identity = 123/150 (82.00%), Postives = 133/150 (88.67%), Query Frame = 0


Query: 1   MITTTMRKKSASFLFRYSRFFHSDQPLNLNHKNSLLRSGTSLCAPISKYFGSIPGCRKAF 60
           M+  TMRKKS  FLF YSR FHS QPLNL+H NSLLRSGTS C PIS+YFGSI  CRKAF
Sbjct: 5   MMMATMRKKSPGFLFVYSRIFHSHQPLNLHHNNSLLRSGTSFCTPISRYFGSIRECRKAF 64

Query: 61  QASAINYLRMPSGFQFRRFTSLSSGVQRNPSFSRLNSDDIDFFRSILGEKNVVQDEDRLL 120
           QASAIN+ ++PSGF+FR  TSLSS VQRNPSFSRLNSDDI+FFRSILGEKNVVQDEDRLL
Sbjct: 65  QASAINHFKVPSGFRFRCITSLSSVVQRNPSFSRLNSDDIEFFRSILGEKNVVQDEDRLL 124

Query: 121 DANTDWLRKYRGSSKLLLQPRSTEEVAHVL 151
           DANTDWLRKYRGSSKLLLQPRSTEEV+ +L
Sbjct: 125 DANTDWLRKYRGSSKLLLQPRSTEEVSQIL 154

[Close]

BLAST of HG10001995 vs. ExPASy Swiss-Prot
Match: B8B7X6 (Probable D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=D2HGDH PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.9e-19
Identity = 47/82 (57.32%), Postives = 63/82 (76.83%), Query Frame = 0


Query: 69  RMPSGFQFRRFTSLSSGVQRNPSFSRLNSDDIDFFRSILGEKNVVQDEDRLLDANTDWLR 128
           RM    Q R F+S ++ VQRNP++S LNSDD+ +F+SILG+  VVQDEDR+  AN DW+ 
Sbjct: 70  RMNFEVQKRSFSSAAAHVQRNPAYSVLNSDDVSYFKSILGDSGVVQDEDRVSVANMDWMG 129

Query: 129 KYRGSSKLLLQPRSTEEVAHVL 151
           KY+GSS+LLL P+ST EV+ +L
Sbjct: 130 KYKGSSQLLLLPKSTAEVSKIL 151

[Close]

BLAST of HG10001995 vs. ExPASy Swiss-Prot
Match: Q7XI14 (Probable D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=D2HGDH PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.9e-19
Identity = 47/82 (57.32%), Postives = 63/82 (76.83%), Query Frame = 0


Query: 69  RMPSGFQFRRFTSLSSGVQRNPSFSRLNSDDIDFFRSILGEKNVVQDEDRLLDANTDWLR 128
           RM    Q R F+S ++ VQRNP++S LNSDD+ +F+SILG+  VVQDEDR+  AN DW+ 
Sbjct: 70  RMNFEVQKRSFSSAAAHVQRNPAYSVLNSDDVSYFKSILGDSGVVQDEDRVSVANMDWMG 129

Query: 129 KYRGSSKLLLQPRSTEEVAHVL 151
           KY+GSS+LLL P+ST EV+ +L
Sbjct: 130 KYKGSSQLLLLPKSTAEVSKIL 151

[Close]

BLAST of HG10001995 vs. ExPASy Swiss-Prot
Match: O23240 (D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=D2HGDH PE=1 SV=3)

HSP 1 Score: 93.2 bits (230), Expect = 2.8e-18
Identity = 43/77 (55.84%), Postives = 63/77 (81.82%), Query Frame = 0


Query: 75  QFRRF-TSLSSGVQRNPSFSRLNSDDIDFFRSILGEKNVVQDEDRLLDANTDWLRKYRGS 134
           Q++ F +S +S +QRNP FS L+S D+ +F+ ILGEKNVV+D++RL  ANTDW+ KY+GS
Sbjct: 74  QYKCFGSSAASLIQRNPLFSSLDSKDVSYFKEILGEKNVVEDKERLETANTDWMHKYKGS 133

Query: 135 SKLLLQPRSTEEVAHVL 151
           SKL+L P++T+EV+ +L
Sbjct: 134 SKLMLLPKNTQEVSQIL 150

[Close]

BLAST of HG10001995 vs. ExPASy Swiss-Prot
Match: P46681 (D-2-hydroxyglutarate--pyruvate transhydrogenase DLD2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DLD2 PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.3e-11
Identity = 35/95 (36.84%), Postives = 62/95 (65.26%), Query Frame = 0


Query: 62  ASAINYLRMPSGFQFRRFTSLSS----GVQRNPSFSRLNSDDIDFFRSILGEKNVVQ--D 121
           ++ + Y R  + +  +  T L+S     V R+P F +L SDD+++F+SIL E+ +++  +
Sbjct: 24  SALLGYYRRVNYYSTKIQTRLTSENYPDVHRDPRFKKLTSDDLNYFKSILSEQEILRASE 83

Query: 122 EDRLLDANTDWLRKYRGSSKLLLQPRSTEEVAHVL 151
            + L   N DW+RKY+G SKL+L+P+S E+V+ +L
Sbjct: 84  SEDLSFYNEDWMRKYKGQSKLVLRPKSVEKVSLIL 118

[Close]

BLAST of HG10001995 vs. ExPASy Swiss-Prot
Match: P39976 (D-2-hydroxyglutarate--pyruvate transhydrogenase DLD3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DLD3 PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.4e-09
Identity = 29/67 (43.28%), Postives = 46/67 (68.66%), Query Frame = 0


Query: 86  VQRNPSFSRLNSDDIDFFRSILGEKNVV--QDEDRLLDANTDWLRKYRGSSKLLLQPRST 145
           V+RNP+F  L+S+D+ +FRSIL    ++  Q  + L   N DW++KYRG S L+L P ST
Sbjct: 18  VKRNPNFKVLDSEDLAYFRSILSNDEILNSQAPEELASFNQDWMKKYRGQSNLILLPNST 77

Query: 146 EEVAHVL 151
           ++V+ ++
Sbjct: 78  DKVSKIM 84

[Close]

BLAST of HG10001995 vs. ExPASy TrEMBL
Match: A0A1S3BTX7 (D-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493219 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 5.5e-62
Identity = 123/150 (82.00%), Postives = 133/150 (88.67%), Query Frame = 0


Query: 1   MITTTMRKKSASFLFRYSRFFHSDQPLNLNHKNSLLRSGTSLCAPISKYFGSIPGCRKAF 60
           M+  TMRKKS  FLF YSR FHS QPLNL+H NSLLRSGTS C PIS+YFGSI  CRKAF
Sbjct: 5   MMMATMRKKSPGFLFVYSRIFHSHQPLNLHHNNSLLRSGTSFCTPISRYFGSIRECRKAF 64

Query: 61  QASAINYLRMPSGFQFRRFTSLSSGVQRNPSFSRLNSDDIDFFRSILGEKNVVQDEDRLL 120
           QASAIN+ ++PSGF+FR  TSLSS VQRNPSFSRLNSDDI+FFRSILGEKNVVQDEDRLL
Sbjct: 65  QASAINHFKVPSGFRFRCITSLSSVVQRNPSFSRLNSDDIEFFRSILGEKNVVQDEDRLL 124

Query: 121 DANTDWLRKYRGSSKLLLQPRSTEEVAHVL 151
           DANTDWLRKYRGSSKLLLQPRSTEEV+ +L
Sbjct: 125 DANTDWLRKYRGSSKLLLQPRSTEEVSQIL 154

[Close]

BLAST of HG10001995 vs. ExPASy TrEMBL
Match: A0A1S3BU90 (D-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X3 OS=Cucumis melo OX=3656 GN=LOC103493219 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 5.5e-62
Identity = 123/150 (82.00%), Postives = 133/150 (88.67%), Query Frame = 0


Query: 1   MITTTMRKKSASFLFRYSRFFHSDQPLNLNHKNSLLRSGTSLCAPISKYFGSIPGCRKAF 60
           M+  TMRKKS  FLF YSR FHS QPLNL+H NSLLRSGTS C PIS+YFGSI  CRKAF
Sbjct: 5   MMMATMRKKSPGFLFVYSRIFHSHQPLNLHHNNSLLRSGTSFCTPISRYFGSIRECRKAF 64

Query: 61  QASAINYLRMPSGFQFRRFTSLSSGVQRNPSFSRLNSDDIDFFRSILGEKNVVQDEDRLL 120
           QASAIN+ ++PSGF+FR  TSLSS VQRNPSFSRLNSDDI+FFRSILGEKNVVQDEDRLL
Sbjct: 65  QASAINHFKVPSGFRFRCITSLSSVVQRNPSFSRLNSDDIEFFRSILGEKNVVQDEDRLL 124

Query: 121 DANTDWLRKYRGSSKLLLQPRSTEEVAHVL 151
           DANTDWLRKYRGSSKLLLQPRSTEEV+ +L
Sbjct: 125 DANTDWLRKYRGSSKLLLQPRSTEEVSQIL 154

[Close]

BLAST of HG10001995 vs. ExPASy TrEMBL
Match: A0A1S4DYX4 (D-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493219 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 5.5e-62
Identity = 123/150 (82.00%), Postives = 133/150 (88.67%), Query Frame = 0


Query: 1   MITTTMRKKSASFLFRYSRFFHSDQPLNLNHKNSLLRSGTSLCAPISKYFGSIPGCRKAF 60
           M+  TMRKKS  FLF YSR FHS QPLNL+H NSLLRSGTS C PIS+YFGSI  CRKAF
Sbjct: 5   MMMATMRKKSPGFLFVYSRIFHSHQPLNLHHNNSLLRSGTSFCTPISRYFGSIRECRKAF 64

Query: 61  QASAINYLRMPSGFQFRRFTSLSSGVQRNPSFSRLNSDDIDFFRSILGEKNVVQDEDRLL 120
           QASAIN+ ++PSGF+FR  TSLSS VQRNPSFSRLNSDDI+FFRSILGEKNVVQDEDRLL
Sbjct: 65  QASAINHFKVPSGFRFRCITSLSSVVQRNPSFSRLNSDDIEFFRSILGEKNVVQDEDRLL 124

Query: 121 DANTDWLRKYRGSSKLLLQPRSTEEVAHVL 151
           DANTDWLRKYRGSSKLLLQPRSTEEV+ +L
Sbjct: 125 DANTDWLRKYRGSSKLLLQPRSTEEVSQIL 154

[Close]

BLAST of HG10001995 vs. ExPASy TrEMBL
Match: A0A6J1J7W7 (D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111483383 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 1.0e-55
Identity = 119/159 (74.84%), Postives = 129/159 (81.13%), Query Frame = 0


Query: 1   MITTTMRKKSASFLFRYSRFFHSDQPLNLNHKNSLLRSGTSLC---------APISKYFG 60
           M TTTM++K+AS+LFRYSR FHSDQ LNLNH NS L SGT LC          PIS+Y  
Sbjct: 2   MTTTTMKRKAASYLFRYSRNFHSDQRLNLNHNNSRLLSGTFLCCKTPIIRDSTPISQY-- 61

Query: 61  SIPGCRKAFQASAINYLRMPSGFQFRRFTSLSSGVQRNPSFSRLNSDDIDFFRSILGEKN 120
               CR A+ ASAIN+ RM SGFQFRRF SLSS VQRNPSFSRLNSDDIDFFRSILGEKN
Sbjct: 62  ----CRDAYHASAINHFRMASGFQFRRFASLSSVVQRNPSFSRLNSDDIDFFRSILGEKN 121

Query: 121 VVQDEDRLLDANTDWLRKYRGSSKLLLQPRSTEEVAHVL 151
           V+QDEDRLLDANTDWLRKYRGSSKLLLQPRSTEEV+ +L
Sbjct: 122 VIQDEDRLLDANTDWLRKYRGSSKLLLQPRSTEEVSQIL 154

[Close]

BLAST of HG10001995 vs. ExPASy TrEMBL
Match: A0A6J1C4I6 (D-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X3 OS=Momordica charantia OX=3673 GN=LOC111008299 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 8.6e-55
Identity = 113/159 (71.07%), Postives = 128/159 (80.50%), Query Frame = 0


Query: 1   MITTTMRKKSASFLFRYSRFFHSDQPLNLNHKNSLLRSGTSLCA---------PISKYFG 60
           M+TT M+ K+ ++ FRYSRFFHSDQ  NLN+KNSLL SG   C+         P S + G
Sbjct: 1   MMTTMMKNKATNYFFRYSRFFHSDQRFNLNYKNSLLLSGIPSCSKTPGIRDWTPNSPFLG 60

Query: 61  SIPGCRKAFQASAINYLRMPSGFQFRRFTSLSSGVQRNPSFSRLNSDDIDFFRSILGEKN 120
           SI GCR A  ASA+++ R+  GFQFRRFTSLSS VQRNPSFSRLNSDDIDFFRSILGEKN
Sbjct: 61  SIRGCRNALNASALDHFRVGGGFQFRRFTSLSSEVQRNPSFSRLNSDDIDFFRSILGEKN 120

Query: 121 VVQDEDRLLDANTDWLRKYRGSSKLLLQPRSTEEVAHVL 151
           VVQDEDRLLDANTDW+RKYRGSSKLLLQPRSTEEV+ +L
Sbjct: 121 VVQDEDRLLDANTDWMRKYRGSSKLLLQPRSTEEVSQIL 159

[Close]

BLAST of HG10001995 vs. TAIR 10
Match: AT4G36400.1 (FAD-linked oxidases family protein )

HSP 1 Score: 93.2 bits (230), Expect = 2.0e-19
Identity = 43/77 (55.84%), Postives = 63/77 (81.82%), Query Frame = 0


Query: 75  QFRRF-TSLSSGVQRNPSFSRLNSDDIDFFRSILGEKNVVQDEDRLLDANTDWLRKYRGS 134
           Q++ F +S +S +QRNP FS L+S D+ +F+ ILGEKNVV+D++RL  ANTDW+ KY+GS
Sbjct: 74  QYKCFGSSAASLIQRNPLFSSLDSKDVSYFKEILGEKNVVEDKERLETANTDWMHKYKGS 133

Query: 135 SKLLLQPRSTEEVAHVL 151
           SKL+L P++T+EV+ +L
Sbjct: 134 SKLMLLPKNTQEVSQIL 150

[Close]

BLAST of HG10001995 vs. TAIR 10
Match: AT4G36400.2 (FAD-linked oxidases family protein )

HSP 1 Score: 93.2 bits (230), Expect = 2.0e-19
Identity = 43/77 (55.84%), Postives = 63/77 (81.82%), Query Frame = 0


Query: 75  QFRRF-TSLSSGVQRNPSFSRLNSDDIDFFRSILGEKNVVQDEDRLLDANTDWLRKYRGS 134
           Q++ F +S +S +QRNP FS L+S D+ +F+ ILGEKNVV+D++RL  ANTDW+ KY+GS
Sbjct: 74  QYKCFGSSAASLIQRNPLFSSLDSKDVSYFKEILGEKNVVEDKERLETANTDWMHKYKGS 133

Query: 135 SKLLLQPRSTEEVAHVL 151
           SKL+L P++T+EV+ +L
Sbjct: 134 SKLMLLPKNTQEVSQIL 150

The following BLAST results are available for this feature:

BLAST of HG10001995 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896937.1	2.8e-68	88.67	D-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X1 [Benincasa hispida]	[more]
XP_038896946.1	2.8e-68	88.67	D-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X2 [Benincasa hispida]	[more]
XP_004146548.2	1.6e-63	84.00	D-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X1 [Cucumis sativus] >...	[more]
XP_008452115.1	1.1e-61	82.00	PREDICTED: D-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X1 [Cucumis...	[more]
XP_016901179.1	1.1e-61	82.00	PREDICTED: D-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X2 [Cucumis...	[more]

BLAST of HG10001995 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B8B7X6	1.9e-19	57.32	Probable D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Oryza sativa subsp...	[more]
Q7XI14	1.9e-19	57.32	Probable D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Oryza sativa subsp...	[more]
O23240	2.8e-18	55.84	D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
P46681	7.3e-11	36.84	D-2-hydroxyglutarate--pyruvate transhydrogenase DLD2 OS=Saccharomyces cerevisiae...	[more]
P39976	1.4e-09	43.28	D-2-hydroxyglutarate--pyruvate transhydrogenase DLD3 OS=Saccharomyces cerevisiae...	[more]

BLAST of HG10001995 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BTX7	5.5e-62	82.00	D-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X1 OS=Cucumis melo OX=...	[more]
A0A1S3BU90	5.5e-62	82.00	D-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X3 OS=Cucumis melo OX=...	[more]
A0A1S4DYX4	5.5e-62	82.00	D-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X2 OS=Cucumis melo OX=...	[more]
A0A6J1J7W7	1.0e-55	74.84	D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1C4I6	8.6e-55	71.07	D-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X3 OS=Momordica charan...	[more]

BLAST of HG10001995 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G36400.1	2.0e-19	55.84	FAD-linked oxidases family protein	[more]
AT4G36400.2	2.0e-19	55.84	FAD-linked oxidases family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016167	FAD-binding, type PCMH, subdomain 1	GENE3D	3.30.43.10		coord: 85..151 e-value: 1.5E-13 score: 52.5
None	No IPR available	PANTHER	PTHR43716	D-2-HYDROXYGLUTARATE DEHYDROGENASE, MITOCHONDRIAL	coord: 82..151
IPR036318	FAD-binding, type PCMH-like superfamily	SUPERFAMILY	56176	FAD-binding/transporter-associated domain-like	coord: 92..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10001995.1	HG10001995.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0009853	photorespiration
molecular_function	GO:0047545	2-hydroxyglutarate dehydrogenase activity
molecular_function	GO:0071949	FAD binding
molecular_function	GO:0051990	(R)-2-hydroxyglutarate dehydrogenase activity
molecular_function	GO:0050660	flavin adenine dinucleotide binding