HG10001966 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10001966
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	40S ribosomal protein SA
Location	Chr11: 2191797 .. 2193780 (+)
RNA-Seq Expression	HG10001966
Synteny	HG10001966

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACTGGAACAGAACAGCGTCAACTCTCGCAGAAGGAGGCCGACATTCAGATGATGTTGGCCGCCGAGGTTCATCTAGGCACGAAAAACTGCGACTTCCAAATGGAGCGATACGTTTTCAAGCGCCGGAATGATGGTATTTTGTGAATACATTTCACTTTTAGATCTTTGCTGTTGTTTAAATCCGTAGAGGGATTCCTAGATATTGATTAGTAGAAGGCCTTTCCACTTCTTTTCTCTCTGTTTTCAATATTTAGCTTGAACTGAAACCTTTAAGTCCCATAATGGGTGTGCGTTATTTATATTTTAAACCTTAATTCTCAGAATGAATCTCTCAGAACCAGAATGTGATCATAATTTCATTACTTCTCATGAATGTATGTTATTTCTTTATGTAGGAATCTACATTATTAACCTGGGTAAAACATGGGAGAAACTTCAGATGGCTGCTAGAGTTATTGTGGCTATTGAGAATCCTCAAGAAATTATTGTTCAGTCTGCTAGGCCTTATGGTCAGAGAGCTGTTTTGAAGTTTGCTCAACACACTGGTGCTCATGCAATTGCTGGGAGGCACACCCCTGGAACATTCACCAATCAGCTTCAGACCTCATTCAATGAGCCACGTCTTCTGATACTTACTGATCCTAGAACTGATCATCAGGTGCTTGAACATTTTTAAGAATCAATTCTAGGTTGTGATTATAAGTTCAAGTCCAAGAGGATGTTTTTCTCTTACCAGTTTTAGATTTACTCATGTTTATTCCCTTAGCCATAACTTGTGCCTAACTTAACTTGATGTTGCTGCTGCTATTTATGTTGCCTGATTGGGTTCTTGCTTGTTGCAGCCCATCAAGGAAGCTGCCCTTGGAAACATTCCCACAATTGCCTTTTGTGACACTGATTCGCCAATGCGTTATGTTGATATCGGGATTCCAGCTAATAACAAGGGGAAACACAGCATAGGATGTCTATTCTGGCTTCTTGCAAGGATGGTTTTGCAGATGCGTGGAACAGTTCGTCCTGGGCACAAATGGGACGTGATGGTAACTTCTTCTGAGTTCTATTATCTATCTGAACTTGATAAATTGGGTTATGATATGATAATTGACATTGACACTTGATTGTTGGAACTTAAATCAAAGTCTAATGAATGGTATGCACGCGTGTTTGTTGTGTAGGTGGATTTGTTTTTCTACCGGGAGCCCGAGGAGGTGAAGGAGAAAGAAGAAGAAGAGGCTGTTGCACCACCAGATTATGGCATTGCAGATTTTGGTTCTGCTCGGCTGGCTGTAGATCCGTGGGTTCCTGATGCTCAGTGGGATGCCCCTGCTGTGGTTCCAGCTGCTGCTGCTCCAGTTTCTAATGTTGAGTGGGCCCAAGAGCCAGGTTGAATCCGAGCCCTTTCTTTCTGGCTTTATTTACTGCATATGTTCCATTGGTGTGTTTTCCACTCCAGCTATTTTATTAGGCTGAGTCATTTTTGTCCAAGAGTTTGTCTAGGTTGACTTTTTAAGTGTTCAAAAGAAACTTTTTTTTTTTCACTCAAAATATTTTTTAAGCACTTATAAAGTCAATTCAAATAGCTCTTAGTTTTTCGCCCATGCCTCTTTACTTCCAATCATCTTGGAAGAAAAAACCCCAACGCAAGAATTTTGCATTTATTGCTAGTAGTTTTCTTTTAAATGAAATCCCCAAGTCCCAAGGCCTTGGGGTTTAGGCTTAAGGCTTCACAAAAGGCATGTGCTAATAAACGCGTCCATGACGCAAGGTGCCTGCTCTAGGTGCTTGCGTTGAGCCTTTTAAACACTGGTTTTAGGACAACAGAATAAAGGTTAAGATCTTTTTAATGCTTATTATGGATATTTATTTCTTTGTTATTTGGCCATTTACAGTGGGAGTAGCAGATGGATGGGAGGCTGCCGTAGCACCACCAGCACCTTCACTTGAAGCTGGTGCACCTCCTGCCACCGATTGGCAATAA

mRNA sequence

ATGGCGACTGGAACAGAACAGCGTCAACTCTCGCAGAAGGAGGCCGACATTCAGATGATGTTGGCCGCCGAGGTTCATCTAGGCACGAAAAACTGCGACTTCCAAATGGAGCGATACGTTTTCAAGCGCCGGAATGATGGAATCTACATTATTAACCTGGGTAAAACATGGGAGAAACTTCAGATGGCTGCTAGAGTTATTGTGGCTATTGAGAATCCTCAAGAAATTATTGTTCAGTCTGCTAGGCCTTATGGTCAGAGAGCTGTTTTGAAGTTTGCTCAACACACTGGTGCTCATGCAATTGCTGGGAGGCACACCCCTGGAACATTCACCAATCAGCTTCAGACCTCATTCAATGAGCCACGTCTTCTGATACTTACTGATCCTAGAACTGATCATCAGCCCATCAAGGAAGCTGCCCTTGGAAACATTCCCACAATTGCCTTTTGTGACACTGATTCGCCAATGCGTTATGTTGATATCGGGATTCCAGCTAATAACAAGGGGAAACACAGCATAGGATGTCTATTCTGGCTTCTTGCAAGGATGGTTTTGCAGATGCGTGGAACAGTTCGTCCTGGGCACAAATGGGACGTGATGGTGGATTTGTTTTTCTACCGGGAGCCCGAGGAGGTGAAGGAGAAAGAAGAAGAAGAGGCTGTTGCACCACCAGATTATGGCATTGCAGATTTTGGTTCTGCTCGGCTGGCTGTAGATCCGTGGGTTCCTGATGCTCAGTGGGATGCCCCTGCTGTGGTTCCAGCTGCTGCTGCTCCAGTTTCTAATGTTGAGTGGGCCCAAGAGCCAGTGGGAGTAGCAGATGGATGGGAGGCTGCCGTAGCACCACCAGCACCTTCACTTGAAGCTGGTGCACCTCCTGCCACCGATTGGCAATAA

Coding sequence (CDS)

ATGGCGACTGGAACAGAACAGCGTCAACTCTCGCAGAAGGAGGCCGACATTCAGATGATGTTGGCCGCCGAGGTTCATCTAGGCACGAAAAACTGCGACTTCCAAATGGAGCGATACGTTTTCAAGCGCCGGAATGATGGAATCTACATTATTAACCTGGGTAAAACATGGGAGAAACTTCAGATGGCTGCTAGAGTTATTGTGGCTATTGAGAATCCTCAAGAAATTATTGTTCAGTCTGCTAGGCCTTATGGTCAGAGAGCTGTTTTGAAGTTTGCTCAACACACTGGTGCTCATGCAATTGCTGGGAGGCACACCCCTGGAACATTCACCAATCAGCTTCAGACCTCATTCAATGAGCCACGTCTTCTGATACTTACTGATCCTAGAACTGATCATCAGCCCATCAAGGAAGCTGCCCTTGGAAACATTCCCACAATTGCCTTTTGTGACACTGATTCGCCAATGCGTTATGTTGATATCGGGATTCCAGCTAATAACAAGGGGAAACACAGCATAGGATGTCTATTCTGGCTTCTTGCAAGGATGGTTTTGCAGATGCGTGGAACAGTTCGTCCTGGGCACAAATGGGACGTGATGGTGGATTTGTTTTTCTACCGGGAGCCCGAGGAGGTGAAGGAGAAAGAAGAAGAAGAGGCTGTTGCACCACCAGATTATGGCATTGCAGATTTTGGTTCTGCTCGGCTGGCTGTAGATCCGTGGGTTCCTGATGCTCAGTGGGATGCCCCTGCTGTGGTTCCAGCTGCTGCTGCTCCAGTTTCTAATGTTGAGTGGGCCCAAGAGCCAGTGGGAGTAGCAGATGGATGGGAGGCTGCCGTAGCACCACCAGCACCTTCACTTGAAGCTGGTGCACCTCCTGCCACCGATTGGCAATAA

Protein sequence

MATGTEQRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPQEIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTVRPGHKWDVMVDLFFYREPEEVKEKEEEEAVAPPDYGIADFGSARLAVDPWVPDAQWDAPAVVPAAAAPVSNVEWAQEPVGVADGWEAAVAPPAPSLEAGAPPATDWQ

Homology

[Close]

BLAST of HG10001966 vs. NCBI nr
Match: XP_008453731.1 (PREDICTED: 40S ribosomal protein SA-like [Cucumis melo] >KAA0044754.1 40S ribosomal protein SA-like [Cucumis melo var. makuwa] >TYK16708.1 40S ribosomal protein SA-like [Cucumis melo var. makuwa])

HSP 1 Score: 563.1 bits (1450), Expect = 1.4e-156
Identity = 278/298 (93.29%), Postives = 285/298 (95.64%), Query Frame = 0


Query: 1   MATGTEQRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKL 60
           MATG EQRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKL
Sbjct: 1   MATGAEQRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKL 60

Query: 61  QMAARVIVAIENPQEIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE 120
           QMAARVIVAIENP++IIVQSARPYGQRAVLKFAQ+TGAHAIAGRHTPGTFTNQLQTSFNE
Sbjct: 61  QMAARVIVAIENPRDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFNE 120

Query: 121 PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180
           PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL
Sbjct: 121 PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180

Query: 181 ARMVLQMRGTVRPGHKWDVMVDLFFYREPEEVKEKEEEEAVAPPDYGIADFGSARLAVDP 240
           ARMVLQMRGTVRPG+KWDVMVDLFFYREPEEVKEKEEEEAVAPPDYGIADFGSA LAVD 
Sbjct: 181 ARMVLQMRGTVRPGYKWDVMVDLFFYREPEEVKEKEEEEAVAPPDYGIADFGSAPLAVDQ 240

Query: 241 WVPDAQWDAPAVVP-AAAAPVSNVEWAQEPVGVADGWEAAVAPPAPSLEAGAPPATDW 298
           WVPDAQWDA  V P AAAA VSNVEWAQEPVG ADGW  A+ PPAPSLEA APP++DW
Sbjct: 241 WVPDAQWDASNVAPTAAAASVSNVEWAQEPVGAADGWGVAIPPPAPSLEAVAPPSSDW 298

[Close]

BLAST of HG10001966 vs. NCBI nr
Match: XP_011653139.1 (40S ribosomal protein SA [Cucumis sativus] >XP_031739535.1 40S ribosomal protein SA [Cucumis sativus] >KGN53260.1 hypothetical protein Csa_015332 [Cucumis sativus])

HSP 1 Score: 557.4 bits (1435), Expect = 7.6e-155
Identity = 276/298 (92.62%), Postives = 282/298 (94.63%), Query Frame = 0


Query: 1   MATGTEQRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKL 60
           MATGTEQ QLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKL
Sbjct: 1   MATGTEQCQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKL 60

Query: 61  QMAARVIVAIENPQEIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE 120
           QMAARVIVAIENPQ+IIVQSARPYGQRAVLKFAQ+TGAHAIAGRHTPGTFTNQLQTSFNE
Sbjct: 61  QMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFNE 120

Query: 121 PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180
           PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL
Sbjct: 121 PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180

Query: 181 ARMVLQMRGTVRPGHKWDVMVDLFFYREPEEVKEKEEEEAVAPPDYGIADFGSARLAVDP 240
           ARMVLQMRGTVRPG+KWDVMVDLFFYREPEEVKEKEEEEAVAPPDYGIADFGSA +AVD 
Sbjct: 181 ARMVLQMRGTVRPGYKWDVMVDLFFYREPEEVKEKEEEEAVAPPDYGIADFGSAPVAVDQ 240

Query: 241 WVPDAQWDAPAVVP-AAAAPVSNVEWAQEPVGVADGWEAAVAPPAPSLEAGAPPATDW 298
           WVPDAQW AP V P AAAA VSN EWAQE V  ADGW  A+ PPAPSLEA APPA+DW
Sbjct: 241 WVPDAQWGAPNVAPTAAAASVSNAEWAQESVRAADGWGVAIPPPAPSLEAAAPPASDW 298

[Close]

BLAST of HG10001966 vs. NCBI nr
Match: XP_022942879.1 (40S ribosomal protein SA-like [Cucurbita moschata])

HSP 1 Score: 547.7 bits (1410), Expect = 6.0e-152
Identity = 273/300 (91.00%), Postives = 281/300 (93.67%), Query Frame = 0


Query: 1   MATGTEQRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKL 60
           MATGTEQRQL+QKEADIQMMLAAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEKL
Sbjct: 1   MATGTEQRQLTQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKL 60

Query: 61  QMAARVIVAIENPQEIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE 120
           QMAARVIVAIENPQ+IIVQSARPYGQRAVLKFAQ+TGAHAIAGRHTPGTFTNQLQTSFNE
Sbjct: 61  QMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFNE 120

Query: 121 PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180
           PRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL
Sbjct: 121 PRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180

Query: 181 ARMVLQMRGTVRPGHKWDVMVDLFFYREPEEVKEKEEEEAVAPPDYGIADFGSARLAVDP 240
           ARMVLQMRGTVRPGHKWDVMVDLFFYREPEE KEKEEE+AVAPPDYGIADFG+A L  D 
Sbjct: 181 ARMVLQMRGTVRPGHKWDVMVDLFFYREPEEAKEKEEEQAVAPPDYGIADFGAAPLVADR 240

Query: 241 WVPDAQWDAPAVVP---AAAAPVSNVEWAQEPV---GVADGWEAAVAPPAPSLEAGAPPA 295
           WV DAQWDAP +VP   AAAAPVSNVEWA EPV   G ADGW+ A APPAP LEAGAPPA
Sbjct: 241 WVADAQWDAPDMVPAAAAAAAPVSNVEWALEPVALGGAADGWDVAEAPPAPLLEAGAPPA 300

[Close]

BLAST of HG10001966 vs. NCBI nr
Match: KAG6600605.1 (40S ribosomal protein SA, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 547.0 bits (1408), Expect = 1.0e-151
Identity = 273/302 (90.40%), Postives = 281/302 (93.05%), Query Frame = 0


Query: 1   MATGTEQRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKL 60
           MATGTEQRQL+QKEADIQMMLAAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEKL
Sbjct: 1   MATGTEQRQLTQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKL 60

Query: 61  QMAARVIVAIENPQEIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE 120
           QMAARVIVAIENPQ+IIVQSARPYGQRAVLKFAQ+TGAHAIAGRHTPGTFTNQLQTSFNE
Sbjct: 61  QMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFNE 120

Query: 121 PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180
           PRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL
Sbjct: 121 PRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180

Query: 181 ARMVLQMRGTVRPGHKWDVMVDLFFYREPEEVKEKEEEEAVAPPDYGIADFGSARLAVDP 240
           ARMVLQMRGTVRPGHKWDVMVDLFFYREPEE KEKEEE+AVAPPDYGIADFG+A L  D 
Sbjct: 181 ARMVLQMRGTVRPGHKWDVMVDLFFYREPEEAKEKEEEQAVAPPDYGIADFGAAPLVADR 240

Query: 241 WVPDAQWDAPAVVP-----AAAAPVSNVEWAQEPV---GVADGWEAAVAPPAPSLEAGAP 295
           WV DAQWDAP +VP     AAAAPVSNVEWA EPV   G ADGW+ A APPAP LEAGAP
Sbjct: 241 WVADAQWDAPDMVPAAAAAAAAAPVSNVEWALEPVALGGAADGWDVAEAPPAPLLEAGAP 300

[Close]

BLAST of HG10001966 vs. NCBI nr
Match: KAG7031241.1 (40S ribosomal protein SA, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 545.8 bits (1405), Expect = 2.3e-151
Identity = 272/304 (89.47%), Postives = 281/304 (92.43%), Query Frame = 0


Query: 1   MATGTEQRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKL 60
           MATGTEQRQL+QKEADIQMMLAAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEKL
Sbjct: 1   MATGTEQRQLTQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKL 60

Query: 61  QMAARVIVAIENPQEIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE 120
           QMAARVIVAIENPQ+IIVQSARPYGQRAVLKFAQ+TGAHAIAGRHTPGTFTNQLQTSFNE
Sbjct: 61  QMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFNE 120

Query: 121 PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180
           PRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL
Sbjct: 121 PRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180

Query: 181 ARMVLQMRGTVRPGHKWDVMVDLFFYREPEEVKEKEEEEAVAPPDYGIADFGSARLAVDP 240
           ARMVLQMRGTVRPGHKWDVMVDLFFYREPEE KEKEEE+AVAPPDYGIADFG+A L  D 
Sbjct: 181 ARMVLQMRGTVRPGHKWDVMVDLFFYREPEEAKEKEEEQAVAPPDYGIADFGAAPLVADR 240

Query: 241 WVPDAQWDAPAVVP-----AAAAPVSNVEWAQEPV---GVADGWEAAVAPPAPSLEAGAP 297
           WV DAQWDAP +VP     AAAAPVSNVEWA EPV   G ADGW+ A APPAP LEAG P
Sbjct: 241 WVADAQWDAPDMVPAAAAAAAAAPVSNVEWALEPVALGGAADGWDVAEAPPAPLLEAGPP 300

[Close]

BLAST of HG10001966 vs. ExPASy Swiss-Prot
Match: A5BUU4 (40S ribosomal protein SA OS=Vitis vinifera OX=29760 GN=GSVIVT00034021001 PE=3 SV=1)

HSP 1 Score: 452.2 bits (1162), Expect = 4.5e-126
Identity = 240/314 (76.43%), Postives = 256/314 (81.53%), Query Frame = 0


Query: 1   MATGTEQRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKL 60
           MAT T  R LSQKE DIQMMLAAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEKL
Sbjct: 1   MATPT--RALSQKEQDIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKL 60

Query: 61  QMAARVIVAIENPQEIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE 120
           Q+AARVIVAIENP++IIVQSARPYGQRAVLKFAQ+TGAHAIAGRHTPGTFTNQLQTSF+E
Sbjct: 61  QLAARVIVAIENPKDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSE 120

Query: 121 PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180
           PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL
Sbjct: 121 PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180

Query: 181 ARMVLQMRGTVRPGHKWDVMVDLFFYREPEEVKEKEEEEAVAPPDYGIADFGSAR---LA 240
           ARMVLQMR T+ PGHKWDVMVDLFFYREPEE KE+E +E VA PDYGI D+ +     L 
Sbjct: 181 ARMVLQMRRTIAPGHKWDVMVDLFFYREPEEPKEQEGDEVVAAPDYGITDYQATALGGLG 240

Query: 241 VDPW---VPDA-QW--DAPAVVPAAAAPVSN-VEWAQEPVGV---ADGWEAAVAPPA--- 299
              W   + DA QW  D PAV P  A P SN  + A  P  V    DGW+AA APP    
Sbjct: 241 GGDWGAPITDAPQWGADVPAVAPIPAVPGSNWGDAAPMPSAVPIATDGWDAAAAPPVAVP 300

[Close]

BLAST of HG10001966 vs. ExPASy Swiss-Prot
Match: O22518 (40S ribosomal protein SA OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 443.7 bits (1140), Expect = 1.6e-123
Identity = 226/288 (78.47%), Postives = 238/288 (82.64%), Query Frame = 0


Query: 2   ATGTEQRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQ 61
           A     RQLSQKEADIQMMLAA+VHLGTKNCDFQMERY+FKRRNDGIYIINLGKTWEKLQ
Sbjct: 7   AAAAPPRQLSQKEADIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQ 66

Query: 62  MAARVIVAIENPQEIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNEP 121
           +AARVIVAIENPQ+IIVQSARPYGQRAVLKFAQ+TGAHAIAGRHTPGTFTNQLQTSF+EP
Sbjct: 67  LAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEP 126

Query: 122 RLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLA 181
           RLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLA
Sbjct: 127 RLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLA 186

Query: 182 RMVLQMRGTVRPGHKWDVMVDLFFYREPEEVKEKEEEEAVAPPDYGIADFGSARLAVD-- 241
           RMVLQMRGT+RPG KWDVMVDLFFYREPEE K++EEEEA A  DY I DF +  +A D  
Sbjct: 187 RMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEEEAPA-VDYAITDFNAGAIAADGQ 246

Query: 242 -PWVPDAQWDAPAVVPAAAAPVSNVEW---AQEPVGVADGWEAAVAPP 284
            P   D  W      P  A P   V W   A+ P      W  AV PP
Sbjct: 247 WPGTIDQSWSDAVPQPIPAVP--GVNWGAPAEAPAAAGGDWGEAVPPP 291

[Close]

BLAST of HG10001966 vs. ExPASy Swiss-Prot
Match: O65751 (40S ribosomal protein SA OS=Cicer arietinum OX=3827 GN=RAP40 PE=2 SV=1)

HSP 1 Score: 438.3 bits (1126), Expect = 6.7e-122
Identity = 230/304 (75.66%), Postives = 248/304 (81.58%), Query Frame = 0


Query: 1   MATGT-EQRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK 60
           MAT T   RQL+QKEADIQMMLAA+VHLGTKNC+FQMERY+FKRRNDGIYIINLGKTW+K
Sbjct: 1   MATTTAPSRQLTQKEADIQMMLAADVHLGTKNCNFQMERYIFKRRNDGIYIINLGKTWDK 60

Query: 61  LQMAARVIVAIENPQEIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFN 120
           L +AAR+IVAIEN Q+IIVQSARPYGQRAVLKFAQ+TGAHAIAGRHTPGTFTNQLQTSF+
Sbjct: 61  LNLAARIIVAIENSQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFS 120

Query: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 180
           EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPM YVDIGIPANNKGKHSIGCLFWL
Sbjct: 121 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMNYVDIGIPANNKGKHSIGCLFWL 180

Query: 181 LARMVLQMRGTVRPGHKWDVMVDLFFYREPEEVKEKEEEEAVAPPDYGIADFGSARLAVD 240
           LARMVLQMRGT+RPG KWDVMVDLFFYREPEE K+ EE+E VA PDY IADF  + +  D
Sbjct: 181 LARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQPEEDE-VAAPDYAIADFNVSAIPSD 240

Query: 241 ---PWVPDAQWDAPAVVPAAAAPVSNVEWAQEPVGVADGWEAAVAPPAPSLEAG--APPA 299
              P   D  W+     P  A P   V WA  P  VA  W  AV PP     AG  + PA
Sbjct: 241 GQWPAAIDQPWNDAVPQPIPAVPA--VNWA-APEAVAGDWGEAVPPPQQIPTAGIESVPA 300

[Close]

BLAST of HG10001966 vs. ExPASy Swiss-Prot
Match: O80377 (40S ribosomal protein SA OS=Daucus carota OX=4039 GN=179B PE=2 SV=1)

HSP 1 Score: 438.3 bits (1126), Expect = 6.7e-122
Identity = 226/302 (74.83%), Postives = 249/302 (82.45%), Query Frame = 0


Query: 1   MATGTEQRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKL 60
           MA+G   R+LS  EADIQMM AAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKL
Sbjct: 1   MASGA--RELSTMEADIQMMCAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKL 60

Query: 61  QMAARVIVAIENPQEIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE 120
            +AARVIV+IENPQ+IIVQSARPYGQRAVLKFAQ+TGAHAIAGRHTPGTFTNQLQTSF+E
Sbjct: 61  MLAARVIVSIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSE 120

Query: 121 PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180
           PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL
Sbjct: 121 PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180

Query: 181 ARMVLQMRGTVRPGHKWDVMVDLFFYREPEEVKEKEEEEAVAPPDYGIADFGSARL-AVD 240
           ARMVLQMRG +  GHKW+VMVDLFFYREPEE K++EEE+ +   DY +AD+ +A +   D
Sbjct: 181 ARMVLQMRGVISQGHKWEVMVDLFFYREPEETKDQEEED-LPVGDY-VADYAAAPIGGAD 240

Query: 241 PW--VPDAQWDAPAVVPAAAAPVSNVEWAQEPVGVADGWEAAVAPPAP-SLEAGAPPATD 299
            W  +PDAQW    V PA +A V    W        DGW+AA APP P ++    P  T 
Sbjct: 241 QWNAIPDAQWGGDVVQPANSA-VPAGTWTDAGPIAGDGWDAAAAPPVPGAVGLDVPAPTG 297

[Close]

BLAST of HG10001966 vs. ExPASy Swiss-Prot
Match: Q9ZSR8 (40S ribosomal protein SA OS=Brassica napus OX=3708 GN=LRP PE=2 SV=1)

HSP 1 Score: 421.8 bits (1083), Expect = 6.5e-117
Identity = 208/278 (74.82%), Postives = 231/278 (83.09%), Query Frame = 0


Query: 9   QLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIV 68
           QLSQKEADI+MM AAEVHLGTKNC++QMERYVFKRRNDGIYI NLGKTWEKL MAARVIV
Sbjct: 8   QLSQKEADIKMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLMMAARVIV 67

Query: 69  AIENPQEIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNEPRLLILTD 128
           AIENPQ+IIVQSARPYGQRAVLKFAQ+TGA+AIAGRHTPGTFTNQ+QTSF+EPRLLILTD
Sbjct: 68  AIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTD 127

Query: 129 PRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMR 188
           PRTDHQPIKE ALGNIP IAFCDTDSPMR+VDIGIPANNKGKHSIGCLFWLLARMVLQMR
Sbjct: 128 PRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMR 187

Query: 189 GTVRPGHKWDVMVDLFFYREPEEVKEKEEEEAVAPPDYGI--ADFGSARLAVDPWVPDAQ 248
           GT+RP  KWDVMVDLFFYREPEE K ++E+E     ++G+   ++G         +PDA 
Sbjct: 188 GTIRPAQKWDVMVDLFFYREPEETKPEDEDEVAPQAEFGLPAPEYGGGDQWTTAAIPDAA 247

Query: 249 WDAPAVVPAAAAPVSNVEW--AQEPVGVADGWEAAVAP 283
           W   A  P +AAP +   W  +  P     GW+AAV P
Sbjct: 248 WPGEAQAPISAAPAAG-SWNDSAAPAAAEGGWDAAVPP 284

[Close]

BLAST of HG10001966 vs. ExPASy TrEMBL
Match: A0A5A7TNP4 (40S ribosomal protein SA OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G005420 PE=3 SV=1)

HSP 1 Score: 563.1 bits (1450), Expect = 6.7e-157
Identity = 278/298 (93.29%), Postives = 285/298 (95.64%), Query Frame = 0


Query: 1   MATGTEQRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKL 60
           MATG EQRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKL
Sbjct: 1   MATGAEQRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKL 60

Query: 61  QMAARVIVAIENPQEIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE 120
           QMAARVIVAIENP++IIVQSARPYGQRAVLKFAQ+TGAHAIAGRHTPGTFTNQLQTSFNE
Sbjct: 61  QMAARVIVAIENPRDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFNE 120

Query: 121 PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180
           PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL
Sbjct: 121 PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180

Query: 181 ARMVLQMRGTVRPGHKWDVMVDLFFYREPEEVKEKEEEEAVAPPDYGIADFGSARLAVDP 240
           ARMVLQMRGTVRPG+KWDVMVDLFFYREPEEVKEKEEEEAVAPPDYGIADFGSA LAVD 
Sbjct: 181 ARMVLQMRGTVRPGYKWDVMVDLFFYREPEEVKEKEEEEAVAPPDYGIADFGSAPLAVDQ 240

Query: 241 WVPDAQWDAPAVVP-AAAAPVSNVEWAQEPVGVADGWEAAVAPPAPSLEAGAPPATDW 298
           WVPDAQWDA  V P AAAA VSNVEWAQEPVG ADGW  A+ PPAPSLEA APP++DW
Sbjct: 241 WVPDAQWDASNVAPTAAAASVSNVEWAQEPVGAADGWGVAIPPPAPSLEAVAPPSSDW 298

[Close]

BLAST of HG10001966 vs. ExPASy TrEMBL
Match: A0A1S3BXR8 (40S ribosomal protein SA OS=Cucumis melo OX=3656 GN=LOC103494374 PE=3 SV=1)

HSP 1 Score: 563.1 bits (1450), Expect = 6.7e-157
Identity = 278/298 (93.29%), Postives = 285/298 (95.64%), Query Frame = 0


Query: 1   MATGTEQRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKL 60
           MATG EQRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKL
Sbjct: 1   MATGAEQRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKL 60

Query: 61  QMAARVIVAIENPQEIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE 120
           QMAARVIVAIENP++IIVQSARPYGQRAVLKFAQ+TGAHAIAGRHTPGTFTNQLQTSFNE
Sbjct: 61  QMAARVIVAIENPRDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFNE 120

Query: 121 PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180
           PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL
Sbjct: 121 PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180

Query: 181 ARMVLQMRGTVRPGHKWDVMVDLFFYREPEEVKEKEEEEAVAPPDYGIADFGSARLAVDP 240
           ARMVLQMRGTVRPG+KWDVMVDLFFYREPEEVKEKEEEEAVAPPDYGIADFGSA LAVD 
Sbjct: 181 ARMVLQMRGTVRPGYKWDVMVDLFFYREPEEVKEKEEEEAVAPPDYGIADFGSAPLAVDQ 240

Query: 241 WVPDAQWDAPAVVP-AAAAPVSNVEWAQEPVGVADGWEAAVAPPAPSLEAGAPPATDW 298
           WVPDAQWDA  V P AAAA VSNVEWAQEPVG ADGW  A+ PPAPSLEA APP++DW
Sbjct: 241 WVPDAQWDASNVAPTAAAASVSNVEWAQEPVGAADGWGVAIPPPAPSLEAVAPPSSDW 298

[Close]

BLAST of HG10001966 vs. ExPASy TrEMBL
Match: A0A0A0KUD9 (40S ribosomal protein SA OS=Cucumis sativus OX=3659 GN=Csa_4G038770 PE=3 SV=1)

HSP 1 Score: 557.4 bits (1435), Expect = 3.7e-155
Identity = 276/298 (92.62%), Postives = 282/298 (94.63%), Query Frame = 0


Query: 1   MATGTEQRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKL 60
           MATGTEQ QLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKL
Sbjct: 1   MATGTEQCQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKL 60

Query: 61  QMAARVIVAIENPQEIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE 120
           QMAARVIVAIENPQ+IIVQSARPYGQRAVLKFAQ+TGAHAIAGRHTPGTFTNQLQTSFNE
Sbjct: 61  QMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFNE 120

Query: 121 PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180
           PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL
Sbjct: 121 PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180

Query: 181 ARMVLQMRGTVRPGHKWDVMVDLFFYREPEEVKEKEEEEAVAPPDYGIADFGSARLAVDP 240
           ARMVLQMRGTVRPG+KWDVMVDLFFYREPEEVKEKEEEEAVAPPDYGIADFGSA +AVD 
Sbjct: 181 ARMVLQMRGTVRPGYKWDVMVDLFFYREPEEVKEKEEEEAVAPPDYGIADFGSAPVAVDQ 240

Query: 241 WVPDAQWDAPAVVP-AAAAPVSNVEWAQEPVGVADGWEAAVAPPAPSLEAGAPPATDW 298
           WVPDAQW AP V P AAAA VSN EWAQE V  ADGW  A+ PPAPSLEA APPA+DW
Sbjct: 241 WVPDAQWGAPNVAPTAAAASVSNAEWAQESVRAADGWGVAIPPPAPSLEAAAPPASDW 298

[Close]

BLAST of HG10001966 vs. ExPASy TrEMBL
Match: A0A6J1FSL7 (40S ribosomal protein SA OS=Cucurbita moschata OX=3662 GN=LOC111447777 PE=3 SV=1)

HSP 1 Score: 547.7 bits (1410), Expect = 2.9e-152
Identity = 273/300 (91.00%), Postives = 281/300 (93.67%), Query Frame = 0


Query: 1   MATGTEQRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKL 60
           MATGTEQRQL+QKEADIQMMLAAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEKL
Sbjct: 1   MATGTEQRQLTQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKL 60

Query: 61  QMAARVIVAIENPQEIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE 120
           QMAARVIVAIENPQ+IIVQSARPYGQRAVLKFAQ+TGAHAIAGRHTPGTFTNQLQTSFNE
Sbjct: 61  QMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFNE 120

Query: 121 PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180
           PRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL
Sbjct: 121 PRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180

Query: 181 ARMVLQMRGTVRPGHKWDVMVDLFFYREPEEVKEKEEEEAVAPPDYGIADFGSARLAVDP 240
           ARMVLQMRGTVRPGHKWDVMVDLFFYREPEE KEKEEE+AVAPPDYGIADFG+A L  D 
Sbjct: 181 ARMVLQMRGTVRPGHKWDVMVDLFFYREPEEAKEKEEEQAVAPPDYGIADFGAAPLVADR 240

Query: 241 WVPDAQWDAPAVVP---AAAAPVSNVEWAQEPV---GVADGWEAAVAPPAPSLEAGAPPA 295
           WV DAQWDAP +VP   AAAAPVSNVEWA EPV   G ADGW+ A APPAP LEAGAPPA
Sbjct: 241 WVADAQWDAPDMVPAAAAAAAPVSNVEWALEPVALGGAADGWDVAEAPPAPLLEAGAPPA 300

[Close]

BLAST of HG10001966 vs. ExPASy TrEMBL
Match: A0A6J1C6Q9 (40S ribosomal protein SA OS=Momordica charantia OX=3673 GN=LOC111008481 PE=3 SV=1)

HSP 1 Score: 545.4 bits (1404), Expect = 1.4e-151
Identity = 274/301 (91.03%), Postives = 283/301 (94.02%), Query Frame = 0


Query: 1   MATGTEQRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKL 60
           MATGT QRQLSQKEADIQMMLAAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTW+KL
Sbjct: 1   MATGTAQRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWDKL 60

Query: 61  QMAARVIVAIENPQEIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNE 120
           QMAARVIVAIENPQ+IIVQSARPYGQRAVLKFAQ+TGAHAIAGRHTPGTFTNQLQTSFNE
Sbjct: 61  QMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFNE 120

Query: 121 PRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180
           PRLLILTDPRTDHQPIKE ALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL
Sbjct: 121 PRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLL 180

Query: 181 ARMVLQMRGTVRPGHKWDVMVDLFFYREPEEVKEKEEEEAVAPPDYGIADFGSARLAVDP 240
           ARMVLQMRGT+R GHKWDVMVDLFFYREPEE KE EEEEAVAPPDYGIADFG+A LAVD 
Sbjct: 181 ARMVLQMRGTIRAGHKWDVMVDLFFYREPEEAKE-EEEEAVAPPDYGIADFGAAPLAVDQ 240

Query: 241 WVPDAQWDAPAVVP-AAAAPVSNVEWAQEPV--GVADGWEAAVA-PPAPSLEAGAPPATD 298
           W PDAQW A  VVP AAAAP SNVEWAQEPV  G ADGW+AAVA PPAP +EAGAPPA+D
Sbjct: 241 WAPDAQWGASDVVPAAAAAPASNVEWAQEPVALGAADGWDAAVARPPAPPVEAGAPPASD 300

[Close]

BLAST of HG10001966 vs. TAIR 10
Match: AT1G72370.1 (40s ribosomal protein SA )

HSP 1 Score: 420.2 bits (1079), Expect = 1.4e-117
Identity = 215/290 (74.14%), Postives = 239/290 (82.41%), Query Frame = 0


Query: 9   QLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIV 68
           QLSQKEAD++MM AAEVHLGTKNC++QMERYVFKRRNDGIYI NLGKTWEKLQMAARVIV
Sbjct: 11  QLSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIV 70

Query: 69  AIENPQEIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNEPRLLILTD 128
           AIENPQ+IIVQSARPYGQRAVLKFAQ+TGA+AIAGRHTPGTFTNQ+QTSF+EPRLLILTD
Sbjct: 71  AIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTD 130

Query: 129 PRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMR 188
           PRTDHQPIKE ALGNIP IAFCDTDSPMR+VDIGIPANNKGKHSIGCLFWLLARMVLQMR
Sbjct: 131 PRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMR 190

Query: 189 GTVRPGHKWDVMVDLFFYREPEEVKEKEEEEAVAPPDYG---IADFGSARLAVDPW---- 248
           GT+  G KWDVMVDLFFYREPEE K ++E+EA    +YG     ++G   +  D W    
Sbjct: 191 GTIAAGQKWDVMVDLFFYREPEETKPEDEDEAGPQAEYGALPAPEYG--MVGGDQWTTAQ 250

Query: 249 VPDAQWDAPAVVPAAAAPVSNVEWAQEPVGVAD-GWEAAVAPPAPSLEAG 291
           +PDA W      P +AAP +   W+      AD GWEAA APP+ +  AG
Sbjct: 251 IPDAAWPGEGQAPISAAPAA-ASWSDSAAAPADGGWEAA-APPSGAPAAG 296

[Close]

BLAST of HG10001966 vs. TAIR 10
Match: AT1G72370.2 (40s ribosomal protein SA )

HSP 1 Score: 417.9 bits (1073), Expect = 6.7e-117
Identity = 214/289 (74.05%), Postives = 238/289 (82.35%), Query Frame = 0


Query: 9   QLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIV 68
           QLSQKEAD++MM AAEVHLGTKNC++QMERYVFKRRNDGIYI NLGKTWEKLQMAARVIV
Sbjct: 11  QLSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIV 70

Query: 69  AIENPQEIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNEPRLLILTD 128
           AIENPQ+IIVQSARPYGQRAVLKFAQ+TGA+AIAGRHTPGTFTNQ+QTSF+EPRLLILTD
Sbjct: 71  AIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTD 130

Query: 129 PRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMR 188
           PRTDHQPIKE ALGNIP IAFCDTDSPMR+VDIGIPANNKGKHSIGCLFWLLARMVLQMR
Sbjct: 131 PRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMR 190

Query: 189 GTVRPGHKWDVMVDLFFYREPEEVKEKEEEEAVAPPDYG---IADFGSARLAVDPW---- 248
           GT+  G KWDVMVDLFFYREPEE K ++E+EA    +YG     ++G   +  D W    
Sbjct: 191 GTIAAGQKWDVMVDLFFYREPEETKPEDEDEAGPQAEYGALPAPEYG--MVGGDQWTTAQ 250

Query: 249 VPDAQWDAPAVVPAAAAPVSNVEWAQEPVGVADGWEAAVAPPAPSLEAG 291
           +PDA W      P +AAP +   W+    G   GWEAA APP+ +  AG
Sbjct: 251 IPDAAWPGEGQAPISAAPAA-ASWSDSADG---GWEAA-APPSGAPAAG 292

[Close]

BLAST of HG10001966 vs. TAIR 10
Match: AT3G04770.2 (40s ribosomal protein SA B )

HSP 1 Score: 410.6 bits (1054), Expect = 1.1e-114
Identity = 208/284 (73.24%), Postives = 231/284 (81.34%), Query Frame = 0


Query: 5   TEQRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAA 64
           T  RQ+S+KEADIQMML+A+VHLGTKNC++QMERYVFKRR+DGIYIINLGKTW+KLQMAA
Sbjct: 8   TAGRQVSEKEADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAA 67

Query: 65  RVIVAIENPQEIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNEPRLL 124
           RVIVAIENP++IIVQSARPYGQRAVLKFAQ+TG +AIAGRHTPGTFTNQ+QTSF+EPRLL
Sbjct: 68  RVIVAIENPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLL 127

Query: 125 ILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMV 184
           ILTDPRTDHQPIKE ALGNIPTIAFCDTDSPM +VDIGIPANNKGKHSIGCLFWLLARMV
Sbjct: 128 ILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMV 187

Query: 185 LQMRGTVRPGHKWDVMVDLFFYREPEEVKEKEEEEAVAPPDYGIADFGSARLAVDPW--- 244
           LQMRGT+    KWDVMVDLFFYREPEE K++ +EEA    DYG+       +  D W   
Sbjct: 188 LQMRGTILAAQKWDVMVDLFFYREPEEAKQEGDEEAEVQADYGM-------VGGDQWTTA 247

Query: 245 -VPDAQWDAPAVVPAAAAPVSNVEWAQEPVGVADGWEAAVAPPA 285
            + DA W      P +AAP   V        VA GWEAA  P A
Sbjct: 248 QISDAAWSGEVEQPISAAPAVGVT-------VAAGWEAASVPAA 277

[Close]

BLAST of HG10001966 vs. TAIR 10
Match: AT3G04770.1 (40s ribosomal protein SA B )

HSP 1 Score: 362.8 bits (930), Expect = 2.6e-100
Identity = 172/198 (86.87%), Postives = 189/198 (95.45%), Query Frame = 0


Query: 5   TEQRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAA 64
           T  RQ+S+KEADIQMML+A+VHLGTKNC++QMERYVFKRR+DGIYIINLGKTW+KLQMAA
Sbjct: 8   TAGRQVSEKEADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAA 67

Query: 65  RVIVAIENPQEIIVQSARPYGQRAVLKFAQHTGAHAIAGRHTPGTFTNQLQTSFNEPRLL 124
           RVIVAIENP++IIVQSARPYGQRAVLKFAQ+TG +AIAGRHTPGTFTNQ+QTSF+EPRLL
Sbjct: 68  RVIVAIENPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLL 127

Query: 125 ILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMV 184
           ILTDPRTDHQPIKE ALGNIPTIAFCDTDSPM +VDIGIPANNKGKHSIGCLFWLLARMV
Sbjct: 128 ILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMV 187

Query: 185 LQMRGTVRPGHKWDVMVD 203
           LQMRGT+    KWDVMV+
Sbjct: 188 LQMRGTILAAQKWDVMVN 205

The following BLAST results are available for this feature:

BLAST of HG10001966 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008453731.1	1.4e-156	93.29	PREDICTED: 40S ribosomal protein SA-like [Cucumis melo] >KAA0044754.1 40S riboso...	[more]
XP_011653139.1	7.6e-155	92.62	40S ribosomal protein SA [Cucumis sativus] >XP_031739535.1 40S ribosomal protein...	[more]
XP_022942879.1	6.0e-152	91.00	40S ribosomal protein SA-like [Cucurbita moschata]	[more]
KAG6600605.1	1.0e-151	90.40	40S ribosomal protein SA, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7031241.1	2.3e-151	89.47	40S ribosomal protein SA, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of HG10001966 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A5BUU4	4.5e-126	76.43	40S ribosomal protein SA OS=Vitis vinifera OX=29760 GN=GSVIVT00034021001 PE=3 SV...	[more]
O22518	1.6e-123	78.47	40S ribosomal protein SA OS=Glycine max OX=3847 PE=2 SV=1	[more]
O65751	6.7e-122	75.66	40S ribosomal protein SA OS=Cicer arietinum OX=3827 GN=RAP40 PE=2 SV=1	[more]
O80377	6.7e-122	74.83	40S ribosomal protein SA OS=Daucus carota OX=4039 GN=179B PE=2 SV=1	[more]
Q9ZSR8	6.5e-117	74.82	40S ribosomal protein SA OS=Brassica napus OX=3708 GN=LRP PE=2 SV=1	[more]

BLAST of HG10001966 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TNP4	6.7e-157	93.29	40S ribosomal protein SA OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3BXR8	6.7e-157	93.29	40S ribosomal protein SA OS=Cucumis melo OX=3656 GN=LOC103494374 PE=3 SV=1	[more]
A0A0A0KUD9	3.7e-155	92.62	40S ribosomal protein SA OS=Cucumis sativus OX=3659 GN=Csa_4G038770 PE=3 SV=1	[more]
A0A6J1FSL7	2.9e-152	91.00	40S ribosomal protein SA OS=Cucurbita moschata OX=3662 GN=LOC111447777 PE=3 SV=1	[more]
A0A6J1C6Q9	1.4e-151	91.03	40S ribosomal protein SA OS=Momordica charantia OX=3673 GN=LOC111008481 PE=3 SV=...	[more]

BLAST of HG10001966 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G72370.1	1.4e-117	74.14	40s ribosomal protein SA	[more]
AT1G72370.2	6.7e-117	74.05	40s ribosomal protein SA	[more]
AT3G04770.2	1.1e-114	73.24	40s ribosomal protein SA B	[more]
AT3G04770.1	2.6e-100	86.87	40s ribosomal protein SA B	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001865	Ribosomal protein S2	PRINTS	PR00395	RIBOSOMALS2	coord: 47..56 score: 64.92 coord: 96..113 score: 47.01 coord: 121..138 score: 44.62 coord: 159..173 score: 53.64 coord: 17..35 score: 36.11 coord: 138..149 score: 51.15
IPR001865	Ribosomal protein S2	PFAM	PF00318	Ribosomal_S2	coord: 119..184 e-value: 4.8E-12 score: 45.6 coord: 20..113 e-value: 1.1E-13 score: 51.0
IPR001865	Ribosomal protein S2	CDD	cd01425	RPS2	coord: 20..186 e-value: 2.84647E-73 score: 221.687
None	No IPR available	GENE3D	3.40.50.10490		coord: 16..222 e-value: 3.5E-104 score: 348.5
None	No IPR available	PANTHER	PTHR11489:SF25	40S RIBOSOMAL PROTEIN SA	coord: 9..286
IPR005707	Ribosomal protein S2, eukaryotic/archaeal	TIGRFAM	TIGR01012	TIGR01012	coord: 12..208 e-value: 3.2E-96 score: 318.5
IPR005707	Ribosomal protein S2, eukaryotic/archaeal	PANTHER	PTHR11489	40S RIBOSOMAL PROTEIN SA	coord: 9..286
IPR018130	Ribosomal protein S2, conserved site	PROSITE	PS00962	RIBOSOMAL_S2_1	coord: 17..28
IPR018130	Ribosomal protein S2, conserved site	PROSITE	PS00963	RIBOSOMAL_S2_2	coord: 121..145
IPR027498	Ribosomal protein S2, eukaryotic	HAMAP	MF_03015	Ribosomal_S2_euk	coord: 2..268 score: 50.40974
IPR023591	Ribosomal protein S2, flavodoxin-like domain superfamily	SUPERFAMILY	52313	Ribosomal protein S2	coord: 12..202

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10001966.1	HG10001966.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome