HG10001957 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10001957
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Late embryogenesis abundant protein
Location	Chr11: 2090077 .. 2090419 (-)
RNA-Seq Expression	HG10001957
Synteny	HG10001957

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGCATTCGTTTGGAGAAGGATATGCGACGAGATCGGATGAAGAAGGGTTCGGCGGAGTTTACAATCATCAGAATCAGTCATTTCCTAAAACCCATGGGAATCAGATTATTCAAGATGCCAATCAACCTGGTCTCTCTCATTATTTCTATTTAATCTCCACTTGAATTTCAGATGATTTTTCTTTGATTTTTGTGTTTCTCCAATTTGGGTTGTACTAGTACTTTTCTATAATTTTTATATTTATACATTGTTTTGTTTTGGACAGGTTATGATAAGAGTCAAGGGAGCGAAGTAAAGGAGAAGGAACAAGCAAGAAATCAGAGCAATGCAAGTGCTTAA

mRNA sequence

ATGTCGCATTCGTTTGGAGAAGGATATGCGACGAGATCGGATGAAGAAGGGTTCGGCGGAGTTTACAATCATCAGAATCAGTCATTTCCTAAAACCCATGGGAATCAGATTATTCAAGATGCCAATCAACCTGGTTATGATAAGAGTCAAGGGAGCGAAGTAAAGGAGAAGGAACAAGCAAGAAATCAGAGCAATGCAAGTGCTTAA

Coding sequence (CDS)

ATGTCGCATTCGTTTGGAGAAGGATATGCGACGAGATCGGATGAAGAAGGGTTCGGCGGAGTTTACAATCATCAGAATCAGTCATTTCCTAAAACCCATGGGAATCAGATTATTCAAGATGCCAATCAACCTGGTTATGATAAGAGTCAAGGGAGCGAAGTAAAGGAGAAGGAACAAGCAAGAAATCAGAGCAATGCAAGTGCTTAA

Protein sequence

MSHSFGEGYATRSDEEGFGGVYNHQNQSFPKTHGNQIIQDANQPGYDKSQGSEVKEKEQARNQSNASA

Homology

[Close]

BLAST of HG10001957 vs. NCBI nr
Match: XP_022136799.1 (uncharacterized protein LOC111008409 [Momordica charantia])

HSP 1 Score: 105.5 bits (262), Expect = 1.8e-19
Identity = 54/68 (79.41%), Postives = 61/68 (89.71%), Query Frame = 0


Query: 1  MSHSFGEGYATRSDEEGFGGVYNHQNQSFPKTHGNQIIQDANQPGYDKSQGSEVKEKEQA 60
          MSHSFGEGYATRSDEEGFGGVY+ QNQSF  T G++I QD NQPGYDKSQGSEVKEKE+A
Sbjct: 16 MSHSFGEGYATRSDEEGFGGVYSDQNQSFRNTDGDRINQDINQPGYDKSQGSEVKEKEKA 75

Query: 61 RNQSNASA 69
          R+Q+NA +
Sbjct: 76 RHQTNAGS 83

[Close]

BLAST of HG10001957 vs. NCBI nr
Match: XP_015889917.1 (uncharacterized protein LOC107424585 [Ziziphus jujuba])

HSP 1 Score: 87.4 bits (215), Expect = 5.1e-14
Identity = 48/63 (76.19%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 1   MSHSFGEGYATRSDEEGFGGVYNHQNQSFPKTHGNQIIQDANQPGYDKSQGSEVKEKEQA 60
           MSHSFGEGYATRSDEEGFGGVY   NQS PKT  +Q+I + N P YDK+QGSEVKEKE+A
Sbjct: 69  MSHSFGEGYATRSDEEGFGGVYG-GNQSIPKTEEDQLIHE-NHPAYDKTQGSEVKEKEKA 128

Query: 61  RNQ 64
           RNQ
Sbjct: 129 RNQ 129

[Close]

BLAST of HG10001957 vs. NCBI nr
Match: KAF3440795.1 (hypothetical protein FNV43_RR19081 [Rhamnella rubrinervis])

HSP 1 Score: 87.0 bits (214), Expect = 6.6e-14
Identity = 50/68 (73.53%), Postives = 55/68 (80.88%), Query Frame = 0


Query: 1   MSHSFGEGYATRSDEEGFGGVYNHQNQSFPKTHGNQIIQDANQPGYDKSQGSEVKEKEQA 60
           MSHSFGEGYATRSDEEGFGGVY   NQS  KT  +Q+I + N P YDK+QGSEVKEKE+A
Sbjct: 68  MSHSFGEGYATRSDEEGFGGVYG-GNQSILKTEEDQLIHE-NHPAYDKTQGSEVKEKEKA 127

Query: 61  RNQSNASA 69
           RNQ N SA
Sbjct: 128 RNQPNESA 133

[Close]

BLAST of HG10001957 vs. NCBI nr
Match: XP_034225880.1 (uncharacterized protein LOC117635652 [Prunus dulcis])

HSP 1 Score: 85.9 bits (211), Expect = 1.5e-13
Identity = 47/68 (69.12%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1   MSHSFGEGYATRSDEEGFGGVYNHQNQSFPKTHGNQIIQDANQPGYDKSQGSEVKEKEQA 60
           MSHSFGEGYATRSDEEGFGGV++  NQS PKT  +Q+I + N P YDK+QGSEVKEKE+ 
Sbjct: 56  MSHSFGEGYATRSDEEGFGGVFS-GNQSLPKTQQDQLIHE-NHPAYDKTQGSEVKEKEKG 115

Query: 61  RNQSNASA 69
           R+Q++A+A
Sbjct: 116 RHQTHANA 121

[Close]

BLAST of HG10001957 vs. NCBI nr
Match: VVA09714.1 (PREDICTED: LOC110634367 isoform [Prunus dulcis])

HSP 1 Score: 85.9 bits (211), Expect = 1.5e-13
Identity = 47/68 (69.12%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1   MSHSFGEGYATRSDEEGFGGVYNHQNQSFPKTHGNQIIQDANQPGYDKSQGSEVKEKEQA 60
           MSHSFGEGYATRSDEEGFGGV++  NQS PKT  +Q+I + N P YDK+QGSEVKEKE+ 
Sbjct: 224 MSHSFGEGYATRSDEEGFGGVFS-GNQSLPKTQQDQLIHE-NHPAYDKTQGSEVKEKEKG 283

Query: 61  RNQSNASA 69
           R+Q++A+A
Sbjct: 284 RHQTHANA 289

[Close]

BLAST of HG10001957 vs. ExPASy TrEMBL
Match: A0A6J1C5D2 (uncharacterized protein LOC111008409 OS=Momordica charantia OX=3673 GN=LOC111008409 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 8.7e-20
Identity = 54/68 (79.41%), Postives = 61/68 (89.71%), Query Frame = 0


Query: 1  MSHSFGEGYATRSDEEGFGGVYNHQNQSFPKTHGNQIIQDANQPGYDKSQGSEVKEKEQA 60
          MSHSFGEGYATRSDEEGFGGVY+ QNQSF  T G++I QD NQPGYDKSQGSEVKEKE+A
Sbjct: 16 MSHSFGEGYATRSDEEGFGGVYSDQNQSFRNTDGDRINQDINQPGYDKSQGSEVKEKEKA 75

Query: 61 RNQSNASA 69
          R+Q+NA +
Sbjct: 76 RHQTNAGS 83

[Close]

BLAST of HG10001957 vs. ExPASy TrEMBL
Match: A0A6P4AUZ7 (uncharacterized protein LOC107424585 OS=Ziziphus jujuba OX=326968 GN=LOC107424585 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.5e-14
Identity = 48/63 (76.19%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 1   MSHSFGEGYATRSDEEGFGGVYNHQNQSFPKTHGNQIIQDANQPGYDKSQGSEVKEKEQA 60
           MSHSFGEGYATRSDEEGFGGVY   NQS PKT  +Q+I + N P YDK+QGSEVKEKE+A
Sbjct: 69  MSHSFGEGYATRSDEEGFGGVYG-GNQSIPKTEEDQLIHE-NHPAYDKTQGSEVKEKEKA 128

Query: 61  RNQ 64
           RNQ
Sbjct: 129 RNQ 129

[Close]

BLAST of HG10001957 vs. ExPASy TrEMBL
Match: A0A5E4E1S5 (PREDICTED: LOC110634367 isoform OS=Prunus dulcis OX=3755 GN=ALMOND_2B025633 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 7.2e-14
Identity = 47/68 (69.12%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1   MSHSFGEGYATRSDEEGFGGVYNHQNQSFPKTHGNQIIQDANQPGYDKSQGSEVKEKEQA 60
           MSHSFGEGYATRSDEEGFGGV++  NQS PKT  +Q+I + N P YDK+QGSEVKEKE+ 
Sbjct: 224 MSHSFGEGYATRSDEEGFGGVFS-GNQSLPKTQQDQLIHE-NHPAYDKTQGSEVKEKEKG 283

Query: 61  RNQSNASA 69
           R+Q++A+A
Sbjct: 284 RHQTHANA 289

[Close]

BLAST of HG10001957 vs. ExPASy TrEMBL
Match: M5WF00 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G153900 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 9.4e-14
Identity = 47/68 (69.12%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 1   MSHSFGEGYATRSDEEGFGGVYNHQNQSFPKTHGNQIIQDANQPGYDKSQGSEVKEKEQA 60
           MSHSFGEGYATRSDEEGFGGV++  NQS PKT  +Q+I + N P YDK+QGSEVKEKE+ 
Sbjct: 56  MSHSFGEGYATRSDEEGFGGVFS-GNQSLPKTQQDQLIHE-NHPAYDKTQGSEVKEKEKG 115

Query: 61  RNQSNASA 69
           R+Q+ A+A
Sbjct: 116 RHQTQANA 121

[Close]

BLAST of HG10001957 vs. ExPASy TrEMBL
Match: A0A314YVV4 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_08517 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 9.4e-14
Identity = 47/68 (69.12%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 1   MSHSFGEGYATRSDEEGFGGVYNHQNQSFPKTHGNQIIQDANQPGYDKSQGSEVKEKEQA 60
           MSHSFGEGYATRSDEEGFGGV++  NQS PKT  +Q+I + N P YDK+QGSEVKEKE+ 
Sbjct: 56  MSHSFGEGYATRSDEEGFGGVFS-GNQSLPKTEQDQLIHE-NHPAYDKTQGSEVKEKEKG 115

Query: 61  RNQSNASA 69
           R+Q+ A+A
Sbjct: 116 RHQTQANA 121

[Close]

BLAST of HG10001957 vs. TAIR 10
Match: AT5G66780.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 71.6 bits (174), Expect = 2.7e-13
Identity = 42/66 (63.64%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 1   MSHSFGEGYATRSDEEGFGGVYNHQNQSFPKTHGNQIIQDANQPGYDKSQGSEVKEKEQA 60
           MSHS+GEGYATRSDEEGFGG+Y   NQ+  K   N+I +  N P YDK+QGSE KEKE+A
Sbjct: 59  MSHSYGEGYATRSDEEGFGGIYG-GNQTLQKE--NEIHE--NHPDYDKTQGSESKEKEKA 118

Query: 61  RNQSNA 67
           RNQ+ +
Sbjct: 119 RNQTQS 119

The following BLAST results are available for this feature:

BLAST of HG10001957 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136799.1	1.8e-19	79.41	uncharacterized protein LOC111008409 [Momordica charantia]	[more]
XP_015889917.1	5.1e-14	76.19	uncharacterized protein LOC107424585 [Ziziphus jujuba]	[more]
KAF3440795.1	6.6e-14	73.53	hypothetical protein FNV43_RR19081 [Rhamnella rubrinervis]	[more]
XP_034225880.1	1.5e-13	69.12	uncharacterized protein LOC117635652 [Prunus dulcis]	[more]
VVA09714.1	1.5e-13	69.12	PREDICTED: LOC110634367 isoform [Prunus dulcis]	[more]

BLAST of HG10001957 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10001957 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C5D2	8.7e-20	79.41	uncharacterized protein LOC111008409 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]
A0A6P4AUZ7	2.5e-14	76.19	uncharacterized protein LOC107424585 OS=Ziziphus jujuba OX=326968 GN=LOC10742458...	[more]
A0A5E4E1S5	7.2e-14	69.12	PREDICTED: LOC110634367 isoform OS=Prunus dulcis OX=3755 GN=ALMOND_2B025633 PE=4...	[more]
M5WF00	9.4e-14	69.12	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G153900 PE=4 SV=1	[more]
A0A314YVV4	9.4e-14	69.12	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_085...	[more]

BLAST of HG10001957 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G66780.1	2.7e-13	63.64	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..49
None	No IPR available	PANTHER	PTHR36410	EXPRESSED PROTEIN	coord: 1..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10001957.1	HG10001957.1	mRNA