HG10001914 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10001914
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	polyadenylate-binding protein 2-like
Location	Chr11: 1622107 .. 1625422 (+)
RNA-Seq Expression	HG10001914
Synteny	HG10001914

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGAAAGTGAGCGAGAACGAGATGAGAGTGAGAAAAAGAAGAGAGAGCGAGAGCAAGATTGACTTTTTCATGTGTGCGAGTTCATTTCGATAATTTTATTTAAATTTAGCGTCAGCAAAGGGTCATTTGGTATTTTTTAAAAATTTGGGTCATTTGACATTTTTGAGTCAATTTTTTGGATTATCGTACAAATTCCCCTAATTTGTCAGCATCCGGTGAATGTTGTTGGGCCGTGAAGTGGAGTAACTTTTATGGGCCCAAGAATTCCGATTCTCTGCAGTTCTACGCATCAAACGAGGAGATTTCTAGAAACGAAAGCGGAATTGCGAGCGAAAGAGAGATGGAGGAAGAAGAGCACGAGGTATACGGTGGAGAGATCCCAGTTGAAGGGGAGATGGACGGAGACGTTGACATGTCCGTCGCCGACGACGACGCCGTCAAGGTTGCCATTTGTTCTCTCTTTCTGTTTCTCGTGATTGAGAGAAAACCAGAAGAAACAATTCTTCTGATTCGTGTCTCTGTGTGAATTGTGATCATGTATGTGTTTCAGGAGCTTGACGAGATGAAAAAGCGCCTGAAGGAGATGGAGGAGGAAGCAGCAGCTCTCCGTGAAATGCAGGCCAAGGTTGAAAAGGAAATGGGAGCCGTCCAAGGTCGTTTTCTTATGATCATGTATTATTGTTTTCGTCTATAAGCACCTGGTAATGGAATTTTAGTTAATTCACGGAATTTTCTGAATTTGAATTGGTTTCGTTGCTGTGATATTGTAAGCGATGATTTTGGGCTTGAAATTTTGATGTGCTGTTGTGATCTTCTTGCATCACCGTTGCTTTGACATTTTGGTTCATAATTGTTAACTTAAATTTTAGAATACCAATACGTTTAAGCTTGGAAGTTTAGTTTTATGTAACCTATGGTAGCAATAACCGTTTGTTATGTGGCTGTAAGTGTTTTACTGCCATAGTTTAGCTGACATGGCAAAACAAATTATGATCATGGTTTTAGACAGAAACCAATATTGAATTATTCGATCATGTTGGTTGAAAGTATCTTAAACTGGGTGAATTTCAAAGTACGCTAATCATAGTTAGTTTTTTCCTATAATTTTTCTCCAATTTGTCCTATTTTATTTATACCTATGACTGTTATGTTTGATGCAGATCCTGCTGGTACATCAGCTAGTCAAGCAGGCAAGGAGGAGACTGATTCACGATCAGTATTTGTTGGCAATGTGAGAAGAAAAATGTCCCTCCTGATGTTTTTTAGATTTGAGAAAAACTTGTTAGTTGTTTGATCTTTGAAAAAATGTTATTGAAATGAAGAATTTCTGCAAAAATTCAAAAAAAAGAAAAAAAAAGAAAAAAAAAAAGAAAGAAAGAAGAAAATTGTGAATGATGGTTGAAACACTGGTTTAACTGGAAAAAAATCAGTGAGAAAAAGATAGAAAGAAAAAAAAAATCTGAAATATCAAAAACCATTAGTGAATTGTTGCATTTAGAAAAAAAAAGGGACTGTTGTTAGTTGAACTTATGTTGCTGAAAGGCATGAGCTTTGGAGGCTGGGACGGTTAAATGTGGAATAACGATGTCGATGGCTCAACTACAGTATGCTAGGGGACAACTCAAATGTCTCCGAGGAAGCAGTGGCAAGTCAAGTGCATGCAATTTTAGTTGCAGAGCCTTGTCAATGCTCGCAGTATTGTCGTTTGTGTCTCACAAATGAGCCATAAAGGAGGAGGCGAGGGTGTAAGATAATCGCTTTTTTGTGGCATTATTTTTCTAGTTTGTGCTTCATTTGACCCAGTTAGACCAACTATTGGATTTTAATGCATGCATTTCACCTTAACCAGTGACCTCTGAAAGAACTATGTGAGCCTTTTCTTCATATTAAGAAATTTTTACTAGATTTACTTATTAATCTAGACTTTTCCTTTTAGTTAGAAACTCAACCTGTCATCTTCCTGCAGAGAGTCTGCTTATTTCATTGTGATAATTAGATTGCAAAACTATGTGAACTAGTAAGATTAAAGTGAGAAATCCTCTATGTTGAAGAAGAAACACCTCATTCTCAATCATATCTAATGACTAATGTAAAACTGTTTTCTAGTTAATGTAATTGATCTCTTAGCGGAGGGAGGCATGCTTGAACATGCATCTGCTATGTGATTCTCATGCCTCTAATTGAATGAAACTTCAAATCTTACATATGTTCATTTAAACATATGAGTTGGATGTTTGTGGTGATTCGGTGATTTTGGTTATAGTTGTTTTTCTTGGCATAGTTTATGATTCTTTTCCCAGTCCATTGGAACTTTGTTACTTCTCAATGTTGCTGTGGTGTATCTTATCTTATCCCCAAACTTTGTTGATTACATGTGATGAAGTTTGCTTTTCTTTTTTGTTTTTGTTCAAAGCTTCTTGATGTAAAATTTTATTAAGAAACCTAACAATTGACTGAACAATTAATTCATACCGAAAATGTAAGTAGTATTTATATTAAAAGCTAAACAACAATCATAAAACGTTTTTCTTTAAGATAACGACATGCTAACTTAATTATTGCCGTATGATGTTTTCTCAAATGAATTACTAATAAATTTATATAAAGAACAGAGAACACATTGAACTTTCTATTCATTGTTGATAGCATTTTGCTATTTTATGCTCAAAGCTCTGCTTCAACTATAAAAAATCCTTGTTTTGAAGGTTGACTATGCATGCACACCCGAAGAAGTGCAACAGCATTTCCAATCCTGTGGTACTGTCAACAGAGTGACTATTTTAACTGATAAATTTGGTCAGCCGAAGGGCTTTGCCTATGTAGAATTTCTTGAAGCTGAAGCTGTTCAAGAGGCCCTCCTTCTGAATGAATCTGAGCTACATGGACGGCAACTGAAGGTCAGTCTTTCGTTTTTCTCGGTTTTCCTTAAGAAAATAAATGGTTTTCATCAAAAAGAAGAAATTTCTGGAAGGAGGTATGAATATAGATATCAATCTACTCTTGGGAACTTCAATATCACTCTGACTTTTAATTATTTGCTTGGTTACTCCATTCCAGGTTTTGCCCAAGAGAACAAATGTTCCTGGTATGAAACAATATCGTCCCCGTCGTTATAATCCGTACGTGGGATTTAGAAGACCGTATGCTCCACCGTATTTCTATTCACCTTATGGCTACGGGTACAGGTTCTAGTGTCTTAATCTTAAATTATCATGAAATTCTCGATTCTGCTAATATCTTGATCCTTCAATATCCCATTGCAGGAAGATGCCTCGGTTTCGAAGGTCGATGAGGTACATGCCCTACTATTAG

mRNA sequence

ATGAGTGAAAGTGAGCGAGAACGAGATGAGACATCCGGTGAATGTTGTTGGGCCGTGAAGTGGAGTAACTTTTATGGGCCCAAGAATTCCGATTCTCTGCAGTTCTACGCATCAAACGAGGAGATTTCTAGAAACGAAAGCGGAATTGCGAGCGAAAGAGAGATGGAGGAAGAAGAGCACGAGGTATACGGTGGAGAGATCCCAGTTGAAGGGGAGATGGACGGAGACGTTGACATGTCCGTCGCCGACGACGACGCCGTCAAGGAGCTTGACGAGATGAAAAAGCGCCTGAAGGAGATGGAGGAGGAAGCAGCAGCTCTCCGTGAAATGCAGGCCAAGGTTGAAAAGGAAATGGGAGCCGTCCAAGATCCTGCTGGTACATCAGCTAGTCAAGCAGGCAAGGAGGAGACTGATTCACGATCAGTATTTGTTGGCAATGTTGACTATGCATGCACACCCGAAGAAGTGCAACAGCATTTCCAATCCTGTGGTACTGTCAACAGAGTGACTATTTTAACTGATAAATTTGGTCAGCCGAAGGGCTTTGCCTATGTAGAATTTCTTGAAGCTGAAGCTGTTCAAGAGGCCCTCCTTCTGAATGAATCTGAGCTACATGGACGGCAACTGAAGGTTTTGCCCAAGAGAACAAATGTTCCTGGTATGAAACAATATCGTCCCCGTCGTTATAATCCGTACGTGGGATTTAGAAGACCGTATGCTCCACCGTATTTCTATTCACCTTATGGCTACGGGTACAGGAAGATGCCTCGGTTTCGAAGGTCGATGAGGTACATGCCCTACTATTAG

Coding sequence (CDS)

ATGAGTGAAAGTGAGCGAGAACGAGATGAGACATCCGGTGAATGTTGTTGGGCCGTGAAGTGGAGTAACTTTTATGGGCCCAAGAATTCCGATTCTCTGCAGTTCTACGCATCAAACGAGGAGATTTCTAGAAACGAAAGCGGAATTGCGAGCGAAAGAGAGATGGAGGAAGAAGAGCACGAGGTATACGGTGGAGAGATCCCAGTTGAAGGGGAGATGGACGGAGACGTTGACATGTCCGTCGCCGACGACGACGCCGTCAAGGAGCTTGACGAGATGAAAAAGCGCCTGAAGGAGATGGAGGAGGAAGCAGCAGCTCTCCGTGAAATGCAGGCCAAGGTTGAAAAGGAAATGGGAGCCGTCCAAGATCCTGCTGGTACATCAGCTAGTCAAGCAGGCAAGGAGGAGACTGATTCACGATCAGTATTTGTTGGCAATGTTGACTATGCATGCACACCCGAAGAAGTGCAACAGCATTTCCAATCCTGTGGTACTGTCAACAGAGTGACTATTTTAACTGATAAATTTGGTCAGCCGAAGGGCTTTGCCTATGTAGAATTTCTTGAAGCTGAAGCTGTTCAAGAGGCCCTCCTTCTGAATGAATCTGAGCTACATGGACGGCAACTGAAGGTTTTGCCCAAGAGAACAAATGTTCCTGGTATGAAACAATATCGTCCCCGTCGTTATAATCCGTACGTGGGATTTAGAAGACCGTATGCTCCACCGTATTTCTATTCACCTTATGGCTACGGGTACAGGAAGATGCCTCGGTTTCGAAGGTCGATGAGGTACATGCCCTACTATTAG

Protein sequence

MSESERERDETSGECCWAVKWSNFYGPKNSDSLQFYASNEEISRNESGIASEREMEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYVGFRRPYAPPYFYSPYGYGYRKMPRFRRSMRYMPYY

Homology

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BLAST of HG10001914 vs. NCBI nr
Match: KGN53209.1 (hypothetical protein Csa_014786 [Cucumis sativus])

HSP 1 Score: 433.3 bits (1113), Expect = 1.5e-117
Identity = 225/236 (95.34%), Postives = 230/236 (97.46%), Query Frame = 0


Query: 33  LQFYASNEEISRNESGIASEREMEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDE 92
           +QFYASNEEISRN+SGI SER+MEEEEHEVYGGEIPVEGEM+GDVDMS  DDDAVKELDE
Sbjct: 1   MQFYASNEEISRNQSGIVSERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDE 60

Query: 93  MKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACT 152
           MKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACT
Sbjct: 61  MKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACT 120

Query: 153 PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVL 212
           PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEAL+LNESELHGRQLKVL
Sbjct: 121 PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVL 180

Query: 213 PKRTNVPGMKQYRPRRYNPYVGFRRPYAPPYFYSPYGYGYRKMPRFRRSMRYMPYY 269
           PKRTNVPGMKQYR RRYNPYVGFRRPYAPPYFYSPYGYG  KMPRFRRSMRYMPYY
Sbjct: 181 PKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYG--KMPRFRRSMRYMPYY 234

[Close]

BLAST of HG10001914 vs. NCBI nr
Match: XP_008453809.2 (PREDICTED: polyadenylate-binding protein 2 isoform X1 [Cucumis melo] >KAA0044711.1 polyadenylate-binding protein 2 isoform X1 [Cucumis melo var. makuwa] >TYK16876.1 polyadenylate-binding protein 2 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 429.5 bits (1103), Expect = 2.1e-116
Identity = 224/236 (94.92%), Postives = 228/236 (96.61%), Query Frame = 0


Query: 33  LQFYASNEEISRNESGIASEREMEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDE 92
           +QFYASNEEISRN S IASER+MEEEEHEVYGGEIPVEGEM+GDVDMS  DDDAVKELDE
Sbjct: 1   MQFYASNEEISRNRSEIASERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDE 60

Query: 93  MKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACT 152
           MKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSA QAGKEETDSRSVFVGNVDYACT
Sbjct: 61  MKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSAGQAGKEETDSRSVFVGNVDYACT 120

Query: 153 PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVL 212
           PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEAL+LNESELHGRQLKVL
Sbjct: 121 PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVL 180

Query: 213 PKRTNVPGMKQYRPRRYNPYVGFRRPYAPPYFYSPYGYGYRKMPRFRRSMRYMPYY 269
           PKRTNVPGMKQYR RRYNPYVGFRRPYAPPYFYSPYGYG  KMPRFRRSMRYMPYY
Sbjct: 181 PKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYG--KMPRFRRSMRYMPYY 234

[Close]

BLAST of HG10001914 vs. NCBI nr
Match: KAE8637153.1 (hypothetical protein CSA_004635 [Cucumis sativus])

HSP 1 Score: 414.5 bits (1064), Expect = 7.2e-112
Identity = 225/274 (82.12%), Postives = 230/274 (83.94%), Query Frame = 0


Query: 33  LQFYASNEEISRNESGIASEREMEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDE 92
           +QFYASNEEISRN+SGI SER+MEEEEHEVYGGEIPVEGEM+GDVDMS  DDDAVKELDE
Sbjct: 1   MQFYASNEEISRNQSGIVSERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDE 60

Query: 93  MKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGN------ 152
           MKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGN      
Sbjct: 61  MKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNSLVNAR 120

Query: 153 --------------------------------VDYACTPEEVQQHFQSCGTVNRVTILTD 212
                                           VDYACTPEEVQQHFQSCGTVNRVTILTD
Sbjct: 121 SIIVCLTNELKGGGEGKLNLSSSGRESSSFIVVDYACTPEEVQQHFQSCGTVNRVTILTD 180

Query: 213 KFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYVG 269
           KFGQPKGFAYVEFLEAEAVQEAL+LNESELHGRQLKVLPKRTNVPGMKQYR RRYNPYVG
Sbjct: 181 KFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVG 240

[Close]

BLAST of HG10001914 vs. NCBI nr
Match: XP_022929268.1 (polyadenylate-binding protein 2-like [Cucurbita moschata] >XP_022929269.1 polyadenylate-binding protein 2-like [Cucurbita moschata] >XP_022985028.1 polyadenylate-binding protein 2-like [Cucurbita maxima] >XP_023553273.1 polyadenylate-binding protein 2-like [Cucurbita pepo subsp. pepo] >XP_023553274.1 polyadenylate-binding protein 2-like [Cucurbita pepo subsp. pepo] >KAG6577291.1 Polyadenylate-binding protein 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 405.6 bits (1041), Expect = 3.3e-109
Identity = 210/214 (98.13%), Postives = 211/214 (98.60%), Query Frame = 0


Query: 55  MEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKV 114
           MEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKV
Sbjct: 1   MEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKV 60

Query: 115 EKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 174
           EKEMGAVQDPAGTS SQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD
Sbjct: 61  EKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 120

Query: 175 KFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYVG 234
           KFGQPKGFAYVEFLEA+AVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYVG
Sbjct: 121 KFGQPKGFAYVEFLEADAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYVG 180

Query: 235 FRRPYAPPYFYSPYGYGYRKMPRFRRSMRYMPYY 269
           FRRPYAPPYFYSPYGYG  KMPRFRRSMRYMPYY
Sbjct: 181 FRRPYAPPYFYSPYGYG--KMPRFRRSMRYMPYY 212

[Close]

BLAST of HG10001914 vs. NCBI nr
Match: KAE8637180.1 (hypothetical protein CSA_018811 [Cucumis sativus])

HSP 1 Score: 404.1 bits (1037), Expect = 9.7e-109
Identity = 220/269 (81.78%), Postives = 225/269 (83.64%), Query Frame = 0


Query: 33  LQFYASNEEISRNESGIASEREMEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDE 92
           +QFYASNEEISRN+SGI SER+MEEEEHEVYGGEIPVEGEM+GDVDMS  DDDAVKELDE
Sbjct: 1   MQFYASNEEISRNQSGIVSERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDE 60

Query: 93  MKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGN------ 152
           MKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGN      
Sbjct: 61  MKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNSLVNAR 120

Query: 153 --------------------------------VDYACTPEEVQQHFQSCGTVNRVTILTD 212
                                           VDYACTPEEVQQHFQSCGTVNRVTILTD
Sbjct: 121 SIIVCLTNELKGGGEGKLNLSSSGRESSSFIVVDYACTPEEVQQHFQSCGTVNRVTILTD 180

Query: 213 KFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYVG 264
           KFGQPKGFAYVEFLEAEAVQEAL+LNESELHGRQLKVLPKRTNVPGMKQYR RRYNPYVG
Sbjct: 181 KFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVG 240

[Close]

BLAST of HG10001914 vs. ExPASy Swiss-Prot
Match: Q9FJN9 (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 1.2e-90
Identity = 181/222 (81.53%), Postives = 195/222 (87.84%), Query Frame = 0


Query: 55  MEEEEHEVYGGEIPVEGEMDG-------DVDMSVADDDAVKELDEMKKRLKEMEEEAAAL 114
           MEEEEHEVYGGEIP  GEMDG       D+DM+ ADDDAVKELDEMKKRLKEME+EAAAL
Sbjct: 1   MEEEEHEVYGGEIPDVGEMDGDMEALNPDLDMAAADDDAVKELDEMKKRLKEMEDEAAAL 60

Query: 115 REMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVN 174
           REMQAKVEKEMGA QDPA  +A+QAGKEE D+RSVFVGNVDYACTPEEVQQHFQ+CGTV+
Sbjct: 61  REMQAKVEKEMGA-QDPASIAANQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTCGTVH 120

Query: 175 RVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPR 234
           RVTILTDKFGQPKGFAYVEF+E EAVQEAL LNESELHGRQLKVL KRTNVPG+KQ+R R
Sbjct: 121 RVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKRTNVPGLKQFRGR 180

Query: 235 RYNPYVG--FRRPYAPPYFYSPYGYGYRKMPRFRRSMRYMPY 268
           R+NPY+G  FRRP+  PY YSPYGYG  K PRFRR MRYMPY
Sbjct: 181 RFNPYMGYRFRRPFMSPYMYSPYGYG--KAPRFRRPMRYMPY 219

[Close]

BLAST of HG10001914 vs. ExPASy Swiss-Prot
Match: Q9LX90 (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 8.8e-89
Identity = 175/218 (80.28%), Postives = 188/218 (86.24%), Query Frame = 0


Query: 55  MEEEEHEVYGGEIPVEGEM---DGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQ 114
           MEEEEHEVYGGEIP  G+    D D+DMS AD+DAV EL EMK+RLKEMEEEAAALREMQ
Sbjct: 1   MEEEEHEVYGGEIPEVGDTDVPDPDIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQ 60

Query: 115 AKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTI 174
           AKVEKEMGA QDPA  +A+Q GKEE D+RSV+VGNVDYACTPEEVQ HFQ+CGTVNRVTI
Sbjct: 61  AKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTI 120

Query: 175 LTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNP 234
           L DKFGQPKGFAYVEF+E EAVQEAL LNESELHGRQLKV PKRTNVPGMKQY P R+NP
Sbjct: 121 LMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGMKQYHPGRFNP 180

Query: 235 YVG--FRRPYAPPYFYSPYGYGYRKMPRFRRSMRYMPY 268
            +G  FRRP+ PPYFYSPYGYG  K PRFRR MRYMPY
Sbjct: 181 SMGYRFRRPFVPPYFYSPYGYG--KAPRFRRPMRYMPY 216

[Close]

BLAST of HG10001914 vs. ExPASy Swiss-Prot
Match: Q93VI4 (Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 3.3e-67
Identity = 149/229 (65.07%), Postives = 175/229 (76.42%), Query Frame = 0


Query: 56  EEEEHEVYGGEIP--VEGEMD--------GDVDMSVADDD-----AVKELDEMKKRLKEM 115
           +E+EHEVYGGEIP   EGEMD        G+   +  D++     + ++L++MKKR+KE+
Sbjct: 5   DEQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELEPGSSSRDLEDMKKRIKEI 64

Query: 116 EEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQHF 175
           EEEA ALREMQAK EK+MGA QDP+G   S A KEE DSRS++VGNVDYACTPEEVQQHF
Sbjct: 65  EEEAGALREMQAKAEKDMGASQDPSG-GVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHF 124

Query: 176 QSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVLPKRTNVPG 235
           QSCGTVNRVTILTDKFGQPKGFAYVEF+E EAVQ +L+LNESELHGRQ+KV  KRTNVPG
Sbjct: 125 QSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTNVPG 184

Query: 236 MKQY--RPRRYNPYVGFRRPYAPPYFYSPYGYGYRKMPRFRRSMRYMPY 268
           M+Q+  R R + P  GF  P  P  FY PY YG  ++PRFRR MRY PY
Sbjct: 185 MRQFRGRGRPFRPMRGF-MPGVP--FYPPYAYG--RVPRFRRPMRYRPY 227

[Close]

BLAST of HG10001914 vs. ExPASy Swiss-Prot
Match: O14327 (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pab2 PE=1 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.6e-34
Identity = 88/152 (57.89%), Postives = 105/152 (69.08%), Query Frame = 0


Query: 81  VADDDAV----KELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEE 140
           ++D DA+    KEL EMK+R+ EME EAA LR MQ +++ E         T A +  KE 
Sbjct: 1   MSDQDALDTQEKELLEMKERVAEMEAEAAKLRAMQEQLDNE---------TEALRNDKES 60

Query: 141 TDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEAEAVQE 200
            D++SV+VGNVDY+ TPEE+Q HF SCG+VNRVTIL DKF G PKGFAY+EF E   V  
Sbjct: 61  IDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPN 120

Query: 201 ALLLNESELHGRQLKVLPKRTNVPGMKQYRPR 228
           ALLLN S LH R LKV PKRTNVPGM + R R
Sbjct: 121 ALLLNGSMLHERPLKVTPKRTNVPGMSRGRGR 143

[Close]

BLAST of HG10001914 vs. ExPASy Swiss-Prot
Match: Q9DDY9 (Polyadenylate-binding protein 2-A OS=Xenopus laevis OX=8355 GN=pabpn1-a PE=2 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.4e-30
Identity = 104/239 (43.51%), Postives = 134/239 (56.07%), Query Frame = 0


Query: 44  RNESGIASEREMEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEE 103
           R  SG      +EE E E    E P  GE+ G  D ++ D     EL+ +K R++EMEEE
Sbjct: 72  RGGSGGGGAGGLEELEDEELEEEEP--GELTG--DQTIED----PELEAIKARVREMEEE 131

Query: 104 AAALREMQAKVEKEMGAVQDPAGTS---ASQAGKEETDSRSVFVGNVDYACTPEEVQQHF 163
           A  L+E+Q +VEK+M     P        S   K E D+RS++VGNVDY  T EE++ HF
Sbjct: 132 AEKLKELQNEVEKQMNMSPPPGNAGPVIMSVEEKMEADARSIYVGNVDYGATAEELEAHF 191

Query: 164 QSCGTVNRVTILTDKF-GQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVLPKRTNVP 223
             CG+VNRVTIL DKF G PKGFAY+EF + E+V+ +L L+ES   GRQ+KV+PKRTN P
Sbjct: 192 HGCGSVNRVTILCDKFTGHPKGFAYIEFCDKESVRTSLALDESLFRGRQIKVVPKRTNRP 251

Query: 224 GMK---------QYRPR--RYNPYVGFRRPYAPPYFYSPYGYGYRKMPRFRRSMRYMPY 268
           G+          +YR R   Y+    F   Y P     P G  YR   R R +  Y PY
Sbjct: 252 GISTTDRGFPRARYRARASSYSSRSRFYSGYTP----RPRGRVYR--GRARATSWYTPY 296

[Close]

BLAST of HG10001914 vs. ExPASy TrEMBL
Match: A0A0A0KWF2 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G026860 PE=4 SV=1)

HSP 1 Score: 433.3 bits (1113), Expect = 7.2e-118
Identity = 225/236 (95.34%), Postives = 230/236 (97.46%), Query Frame = 0


Query: 33  LQFYASNEEISRNESGIASEREMEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDE 92
           +QFYASNEEISRN+SGI SER+MEEEEHEVYGGEIPVEGEM+GDVDMS  DDDAVKELDE
Sbjct: 1   MQFYASNEEISRNQSGIVSERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDE 60

Query: 93  MKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACT 152
           MKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACT
Sbjct: 61  MKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACT 120

Query: 153 PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVL 212
           PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEAL+LNESELHGRQLKVL
Sbjct: 121 PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVL 180

Query: 213 PKRTNVPGMKQYRPRRYNPYVGFRRPYAPPYFYSPYGYGYRKMPRFRRSMRYMPYY 269
           PKRTNVPGMKQYR RRYNPYVGFRRPYAPPYFYSPYGYG  KMPRFRRSMRYMPYY
Sbjct: 181 PKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYG--KMPRFRRSMRYMPYY 234

[Close]

BLAST of HG10001914 vs. ExPASy TrEMBL
Match: A0A5D3D298 (Polyadenylate-binding protein 2 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00070 PE=4 SV=1)

HSP 1 Score: 429.5 bits (1103), Expect = 1.0e-116
Identity = 224/236 (94.92%), Postives = 228/236 (96.61%), Query Frame = 0


Query: 33  LQFYASNEEISRNESGIASEREMEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDE 92
           +QFYASNEEISRN S IASER+MEEEEHEVYGGEIPVEGEM+GDVDMS  DDDAVKELDE
Sbjct: 1   MQFYASNEEISRNRSEIASERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDE 60

Query: 93  MKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACT 152
           MKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSA QAGKEETDSRSVFVGNVDYACT
Sbjct: 61  MKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSAGQAGKEETDSRSVFVGNVDYACT 120

Query: 153 PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVL 212
           PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEAL+LNESELHGRQLKVL
Sbjct: 121 PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVL 180

Query: 213 PKRTNVPGMKQYRPRRYNPYVGFRRPYAPPYFYSPYGYGYRKMPRFRRSMRYMPYY 269
           PKRTNVPGMKQYR RRYNPYVGFRRPYAPPYFYSPYGYG  KMPRFRRSMRYMPYY
Sbjct: 181 PKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYG--KMPRFRRSMRYMPYY 234

[Close]

BLAST of HG10001914 vs. ExPASy TrEMBL
Match: A0A1S3BX92 (polyadenylate-binding protein 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494425 PE=4 SV=1)

HSP 1 Score: 429.5 bits (1103), Expect = 1.0e-116
Identity = 224/236 (94.92%), Postives = 228/236 (96.61%), Query Frame = 0


Query: 33  LQFYASNEEISRNESGIASEREMEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDE 92
           +QFYASNEEISRN S IASER+MEEEEHEVYGGEIPVEGEM+GDVDMS  DDDAVKELDE
Sbjct: 1   MQFYASNEEISRNRSEIASERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDE 60

Query: 93  MKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACT 152
           MKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSA QAGKEETDSRSVFVGNVDYACT
Sbjct: 61  MKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSAGQAGKEETDSRSVFVGNVDYACT 120

Query: 153 PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVL 212
           PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEAL+LNESELHGRQLKVL
Sbjct: 121 PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVL 180

Query: 213 PKRTNVPGMKQYRPRRYNPYVGFRRPYAPPYFYSPYGYGYRKMPRFRRSMRYMPYY 269
           PKRTNVPGMKQYR RRYNPYVGFRRPYAPPYFYSPYGYG  KMPRFRRSMRYMPYY
Sbjct: 181 PKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYG--KMPRFRRSMRYMPYY 234

[Close]

BLAST of HG10001914 vs. ExPASy TrEMBL
Match: A0A6J1EN98 (polyadenylate-binding protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111435898 PE=4 SV=1)

HSP 1 Score: 405.6 bits (1041), Expect = 1.6e-109
Identity = 210/214 (98.13%), Postives = 211/214 (98.60%), Query Frame = 0


Query: 55  MEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKV 114
           MEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKV
Sbjct: 1   MEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKV 60

Query: 115 EKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 174
           EKEMGAVQDPAGTS SQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD
Sbjct: 61  EKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 120

Query: 175 KFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYVG 234
           KFGQPKGFAYVEFLEA+AVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYVG
Sbjct: 121 KFGQPKGFAYVEFLEADAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYVG 180

Query: 235 FRRPYAPPYFYSPYGYGYRKMPRFRRSMRYMPYY 269
           FRRPYAPPYFYSPYGYG  KMPRFRRSMRYMPYY
Sbjct: 181 FRRPYAPPYFYSPYGYG--KMPRFRRSMRYMPYY 212

[Close]

BLAST of HG10001914 vs. ExPASy TrEMBL
Match: A0A6J1JCD2 (polyadenylate-binding protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111483120 PE=4 SV=1)

HSP 1 Score: 405.6 bits (1041), Expect = 1.6e-109
Identity = 210/214 (98.13%), Postives = 211/214 (98.60%), Query Frame = 0


Query: 55  MEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKV 114
           MEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKV
Sbjct: 1   MEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKV 60

Query: 115 EKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 174
           EKEMGAVQDPAGTS SQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD
Sbjct: 61  EKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 120

Query: 175 KFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYVG 234
           KFGQPKGFAYVEFLEA+AVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYVG
Sbjct: 121 KFGQPKGFAYVEFLEADAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYVG 180

Query: 235 FRRPYAPPYFYSPYGYGYRKMPRFRRSMRYMPYY 269
           FRRPYAPPYFYSPYGYG  KMPRFRRSMRYMPYY
Sbjct: 181 FRRPYAPPYFYSPYGYG--KMPRFRRSMRYMPYY 212

[Close]

BLAST of HG10001914 vs. TAIR 10
Match: AT5G65260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 334.3 bits (856), Expect = 8.8e-92
Identity = 181/222 (81.53%), Postives = 195/222 (87.84%), Query Frame = 0


Query: 55  MEEEEHEVYGGEIPVEGEMDG-------DVDMSVADDDAVKELDEMKKRLKEMEEEAAAL 114
           MEEEEHEVYGGEIP  GEMDG       D+DM+ ADDDAVKELDEMKKRLKEME+EAAAL
Sbjct: 1   MEEEEHEVYGGEIPDVGEMDGDMEALNPDLDMAAADDDAVKELDEMKKRLKEMEDEAAAL 60

Query: 115 REMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVN 174
           REMQAKVEKEMGA QDPA  +A+QAGKEE D+RSVFVGNVDYACTPEEVQQHFQ+CGTV+
Sbjct: 61  REMQAKVEKEMGA-QDPASIAANQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTCGTVH 120

Query: 175 RVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPR 234
           RVTILTDKFGQPKGFAYVEF+E EAVQEAL LNESELHGRQLKVL KRTNVPG+KQ+R R
Sbjct: 121 RVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKRTNVPGLKQFRGR 180

Query: 235 RYNPYVG--FRRPYAPPYFYSPYGYGYRKMPRFRRSMRYMPY 268
           R+NPY+G  FRRP+  PY YSPYGYG  K PRFRR MRYMPY
Sbjct: 181 RFNPYMGYRFRRPFMSPYMYSPYGYG--KAPRFRRPMRYMPY 219

[Close]

BLAST of HG10001914 vs. TAIR 10
Match: AT5G10350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 328.2 bits (840), Expect = 6.3e-90
Identity = 175/218 (80.28%), Postives = 188/218 (86.24%), Query Frame = 0


Query: 55  MEEEEHEVYGGEIPVEGEM---DGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQ 114
           MEEEEHEVYGGEIP  G+    D D+DMS AD+DAV EL EMK+RLKEMEEEAAALREMQ
Sbjct: 1   MEEEEHEVYGGEIPEVGDTDVPDPDIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQ 60

Query: 115 AKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTI 174
           AKVEKEMGA QDPA  +A+Q GKEE D+RSV+VGNVDYACTPEEVQ HFQ+CGTVNRVTI
Sbjct: 61  AKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTI 120

Query: 175 LTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNP 234
           L DKFGQPKGFAYVEF+E EAVQEAL LNESELHGRQLKV PKRTNVPGMKQY P R+NP
Sbjct: 121 LMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGMKQYHPGRFNP 180

Query: 235 YVG--FRRPYAPPYFYSPYGYGYRKMPRFRRSMRYMPY 268
            +G  FRRP+ PPYFYSPYGYG  K PRFRR MRYMPY
Sbjct: 181 SMGYRFRRPFVPPYFYSPYGYG--KAPRFRRPMRYMPY 216

[Close]

BLAST of HG10001914 vs. TAIR 10
Match: AT5G10350.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 308.9 bits (790), Expect = 3.9e-84
Identity = 163/202 (80.69%), Postives = 176/202 (87.13%), Query Frame = 0


Query: 55  MEEEEHEVYGGEIPVEGEM---DGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQ 114
           MEEEEHEVYGGEIP  G+    D D+DMS AD+DAV EL EMK+RLKEMEEEAAALREMQ
Sbjct: 1   MEEEEHEVYGGEIPEVGDTDVPDPDIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQ 60

Query: 115 AKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTI 174
           AKVEKEMGA QDPA  +A+Q GKEE D+RSV+VGNVDYACTPEEVQ HFQ+CGTVNRVTI
Sbjct: 61  AKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTI 120

Query: 175 LTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNP 234
           L DKFGQPKGFAYVEF+E EAVQEAL LNESELHGRQLKV PKRTNVPGMKQY P R+NP
Sbjct: 121 LMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGMKQYHPGRFNP 180

Query: 235 YVG--FRRPYAPPYFYSPYGYG 252
            +G  FRRP+ PPYFYSPYGYG
Sbjct: 181 SMGYRFRRPFVPPYFYSPYGYG 202

[Close]

BLAST of HG10001914 vs. TAIR 10
Match: AT5G51120.1 (polyadenylate-binding protein 1 )

HSP 1 Score: 256.5 bits (654), Expect = 2.3e-68
Identity = 149/229 (65.07%), Postives = 175/229 (76.42%), Query Frame = 0


Query: 56  EEEEHEVYGGEIP--VEGEMD--------GDVDMSVADDD-----AVKELDEMKKRLKEM 115
           +E+EHEVYGGEIP   EGEMD        G+   +  D++     + ++L++MKKR+KE+
Sbjct: 5   DEQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELEPGSSSRDLEDMKKRIKEI 64

Query: 116 EEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQHF 175
           EEEA ALREMQAK EK+MGA QDP+G   S A KEE DSRS++VGNVDYACTPEEVQQHF
Sbjct: 65  EEEAGALREMQAKAEKDMGASQDPSG-GVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHF 124

Query: 176 QSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALLLNESELHGRQLKVLPKRTNVPG 235
           QSCGTVNRVTILTDKFGQPKGFAYVEF+E EAVQ +L+LNESELHGRQ+KV  KRTNVPG
Sbjct: 125 QSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTNVPG 184

Query: 236 MKQY--RPRRYNPYVGFRRPYAPPYFYSPYGYGYRKMPRFRRSMRYMPY 268
           M+Q+  R R + P  GF  P  P  FY PY YG  ++PRFRR MRY PY
Sbjct: 185 MRQFRGRGRPFRPMRGF-MPGVP--FYPPYAYG--RVPRFRRPMRYRPY 227

[Close]

BLAST of HG10001914 vs. TAIR 10
Match: AT5G51120.2 (polyadenylate-binding protein 1 )

HSP 1 Score: 234.6 bits (597), Expect = 9.5e-62
Identity = 146/266 (54.89%), Postives = 173/266 (65.04%), Query Frame = 0


Query: 56  EEEEHEVYGGEIP--VEGEMD--------GDVDMSVADDD-----AVKELDEMKKRLKEM 115
           +E+EHEVYGGEIP   EGEMD        G+   +  D++     + ++L++MKKR+KE+
Sbjct: 5   DEQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELEPGSSSRDLEDMKKRIKEI 64

Query: 116 EEEAAALREMQAKVEKEMGAVQ-------------------------------------D 175
           EEEA ALREMQAK EK+MGA Q                                     +
Sbjct: 65  EEEAGALREMQAKAEKDMGASQGLKLVLLIMILLWVYILESFSESMNLSRNLLEFEYEKE 124

Query: 176 PAGTSASQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFA 235
              +  S A KEE DSRS++VGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFA
Sbjct: 125 IINSGVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFA 184

Query: 236 YVEFLEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQY--RPRRYNPYVGFRRPYAP 268
           YVEF+E EAVQ +L+LNESELHGRQ+KV  KRTNVPGM+Q+  R R + P  GF  P  P
Sbjct: 185 YVEFVEVEAVQNSLILNESELHGRQIKVSAKRTNVPGMRQFRGRGRPFRPMRGF-MPGVP 244

The following BLAST results are available for this feature:

BLAST of HG10001914 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53209.1	1.5e-117	95.34	hypothetical protein Csa_014786 [Cucumis sativus]	[more]
XP_008453809.2	2.1e-116	94.92	PREDICTED: polyadenylate-binding protein 2 isoform X1 [Cucumis melo] >KAA0044711...	[more]
KAE8637153.1	7.2e-112	82.12	hypothetical protein CSA_004635 [Cucumis sativus]	[more]
XP_022929268.1	3.3e-109	98.13	polyadenylate-binding protein 2-like [Cucurbita moschata] >XP_022929269.1 polyad...	[more]
KAE8637180.1	9.7e-109	81.78	hypothetical protein CSA_018811 [Cucumis sativus]	[more]

BLAST of HG10001914 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJN9	1.2e-90	81.53	Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV...	[more]
Q9LX90	8.8e-89	80.28	Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV...	[more]
Q93VI4	3.3e-67	65.07	Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV...	[more]
O14327	3.6e-34	57.89	Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]
Q9DDY9	1.4e-30	43.51	Polyadenylate-binding protein 2-A OS=Xenopus laevis OX=8355 GN=pabpn1-a PE=2 SV=...	[more]

BLAST of HG10001914 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWF2	7.2e-118	95.34	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G026860 PE=4 SV...	[more]
A0A5D3D298	1.0e-116	94.92	Polyadenylate-binding protein 2 isoform X1 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3BX92	1.0e-116	94.92	polyadenylate-binding protein 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034944...	[more]
A0A6J1EN98	1.6e-109	98.13	polyadenylate-binding protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC1114358...	[more]
A0A6J1JCD2	1.6e-109	98.13	polyadenylate-binding protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111483120...	[more]

BLAST of HG10001914 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65260.1	8.8e-92	81.53	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G10350.1	6.3e-90	80.28	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G10350.2	3.9e-84	80.69	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G51120.1	2.3e-68	65.07	polyadenylate-binding protein 1	[more]
AT5G51120.2	9.5e-62	54.89	polyadenylate-binding protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 83..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..139
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..77
None	No IPR available	PANTHER	PTHR23236	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	coord: 55..266
None	No IPR available	PANTHER	PTHR23236:SF79	SUBFAMILY NOT NAMED	coord: 55..266
None	No IPR available	CDD	cd12306	RRM_II_PABPs	coord: 141..212 e-value: 5.51567E-48 score: 152.06
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 141..212 e-value: 6.5E-21 score: 85.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 142..210 e-value: 3.9E-16 score: 58.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 140..216 score: 16.738909
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 77..212 e-value: 1.3E-28 score: 101.8
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 130..240

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10001914.1	HG10001914.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding