HG10001908 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10001908
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionTetratricopeptide-like helical
LocationChr11: 1586574 .. 1586882 (+)
RNA-Seq ExpressionHG10001908
SyntenyHG10001908
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGGTTTCTTTAGAAGCTTTGGCAATGGCGGGGATTGATTCCAATGAGTGGGCTATGGATACTGAAGAATGGGAAACAAATACTCATCAAATGGATAATGACATTCCGCCACATTTATTAGCCGACGAAGACGAAGACGAAGAAAATATAATAACAAGTCCAGCCAGTAATTATACGTTTCCGGTCACCGGAAAGATGACGGACTGGTGGTGTTTTCTGCTTTCCGGCGATCGATGTGCCATTTTTAGAAAAATCATGGAGAAGAGAAAACTTCCTATTAGAGTGTATTTCACCCTTTGTAATTAG

mRNA sequence

ATGACGGTTTCTTTAGAAGCTTTGGCAATGGCGGGGATTGATTCCAATGAGTGGGCTATGGATACTGAAGAATGGGAAACAAATACTCATCAAATGGATAATGACATTCCGCCACATTTATTAGCCGACGAAGACGAAGACGAAGAAAATATAATAACAAGTCCAGCCAGTAATTATACGTTTCCGGTCACCGGAAAGATGACGGACTGGTGGTGTTTTCTGCTTTCCGGCGATCGATGTGCCATTTTTAGAAAAATCATGGAGAAGAGAAAACTTCCTATTAGAGTGTATTTCACCCTTTGTAATTAG

Coding sequence (CDS)

ATGACGGTTTCTTTAGAAGCTTTGGCAATGGCGGGGATTGATTCCAATGAGTGGGCTATGGATACTGAAGAATGGGAAACAAATACTCATCAAATGGATAATGACATTCCGCCACATTTATTAGCCGACGAAGACGAAGACGAAGAAAATATAATAACAAGTCCAGCCAGTAATTATACGTTTCCGGTCACCGGAAAGATGACGGACTGGTGGTGTTTTCTGCTTTCCGGCGATCGATGTGCCATTTTTAGAAAAATCATGGAGAAGAGAAAACTTCCTATTAGAGTGTATTTCACCCTTTGTAATTAG

Protein sequence

MTVSLEALAMAGIDSNEWAMDTEEWETNTHQMDNDIPPHLLADEDEDEENIITSPASNYTFPVTGKMTDWWCFLLSGDRCAIFRKIMEKRKLPIRVYFTLCN
Homology
BLAST of HG10001908 vs. NCBI nr
Match: KAG7015383.1 (hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 94.7 bits (234), Expect = 4.8e-16
Identity = 46/65 (70.77%), Postives = 56/65 (86.15%), Query Frame = 0

Query: 1  MTVSLEALAMAGIDSNEWAMDTEEWETNTHQMDNDIPPHLLADEDEDEENIITSPASNYT 60
          M+VSLEALAMAGI SNEWAMD EEWE N  +++ND+PPHLLADED+D++N +TS  SNY+
Sbjct: 1  MSVSLEALAMAGITSNEWAMDAEEWERN--EIENDVPPHLLADEDDDDDN-VTSTVSNYS 60

Query: 61 FPVTG 66
          FPV G
Sbjct: 61 FPVAG 62

BLAST of HG10001908 vs. NCBI nr
Match: KAG6577295.1 (hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.7 bits (234), Expect = 4.8e-16
Identity = 46/65 (70.77%), Postives = 56/65 (86.15%), Query Frame = 0

Query: 1  MTVSLEALAMAGIDSNEWAMDTEEWETNTHQMDNDIPPHLLADEDEDEENIITSPASNYT 60
          M+VSLEALAMAGI SNEWAMD EEWE N  +++ND+PPHLLADED+D++N +TS  SNY+
Sbjct: 1  MSVSLEALAMAGITSNEWAMDAEEWERN--EIENDVPPHLLADEDDDDDN-VTSTVSNYS 60

Query: 61 FPVTG 66
          FPV G
Sbjct: 61 FPVAG 62

BLAST of HG10001908 vs. NCBI nr
Match: KAE8649147.1 (hypothetical protein Csa_014525, partial [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 2.9e-13
Identity = 42/49 (85.71%), Postives = 45/49 (91.84%), Query Frame = 0

Query: 1  MTVSLEALAMAGIDSNEWAMDTEEWETNTHQMDND--IPPHLLADEDED 48
          M VSLEALAMAGIDSNEWAMD EEW+TNTHQM+ND  IPPHLLADEDE+
Sbjct: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEE 49

BLAST of HG10001908 vs. NCBI nr
Match: KAE8637184.1 (hypothetical protein CSA_023573, partial [Cucumis sativus] >KAE8637242.1 hypothetical protein CSA_023968, partial [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 6.5e-13
Identity = 51/88 (57.95%), Postives = 57/88 (64.77%), Query Frame = 0

Query: 7  ALAMAGIDSNEWAMDTEEWETNTHQMDND--IPPHLLADEDEDEENIITSPASNYTFPVT 66
          ALAMAGIDSNEWAMD EEW+TNTHQM+ND  IPPHLLA  DEDEENI           ++
Sbjct: 1  ALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLA--DEDEENIAAKELC-----IS 60

Query: 67 GKMTDWWCFLLSGDR--CAIFRKIMEKR 91
          G   D    +    R   AI RK+MEKR
Sbjct: 61 GHRKDDGLVVFCAFRRSYAILRKMMEKR 81

BLAST of HG10001908 vs. NCBI nr
Match: TYK16880.1 (Tetratricopeptide-like helical [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 1.4e-12
Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 0

Query: 1  MTVSLEALAMAGIDSNEWAMDTEEWETNTHQMDNDIPPHLLADEDEDEE-NIITSPASNY 60
          M+VSLEALAMAGIDSNEW MD +EWE N   +   +PPHLLADE++DE+   +TS  SNY
Sbjct: 1  MSVSLEALAMAGIDSNEWGMDAQEWERNEIDV---VPPHLLADEEDDEDGEYVTSTISNY 60

Query: 61 TFPVTGKMTDW 71
           F V G    W
Sbjct: 61 CFRVDGSFGGW 68

BLAST of HG10001908 vs. ExPASy TrEMBL
Match: A0A0A0KU90 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.5e-15
Identity = 56/94 (59.57%), Postives = 62/94 (65.96%), Query Frame = 0

Query: 1  MTVSLEALAMAGIDSNEWAMDTEEWETNTHQMDND--IPPHLLADEDEDEENIITSPASN 60
          M VSLEALAMAGIDSNEWAMD EEW+TNTHQM+ND  IPPHLLA  DEDEENI       
Sbjct: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLA--DEDEENIAAKELC- 60

Query: 61 YTFPVTGKMTDWWCFLLSGDR--CAIFRKIMEKR 91
              ++G   D    +    R   AI RK+MEKR
Sbjct: 61 ----ISGHRKDDGLVVFCAFRRSYAILRKMMEKR 87

BLAST of HG10001908 vs. ExPASy TrEMBL
Match: A0A0A0KWE7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 4.4e-15
Identity = 46/73 (63.01%), Postives = 53/73 (72.60%), Query Frame = 0

Query: 1  MTVSLEALAMAGIDSNEWAMDTEEWETNTHQMDNDIPPHLLADEDEDE---ENIITSPAS 60
          M+VSLEALAMAGIDSNEWAMD EEWE N   +   +PPHLLADE++DE   E++ TS  S
Sbjct: 1  MSVSLEALAMAGIDSNEWAMDAEEWERNEIDV---VPPHLLADEEDDEDGDEHVTTSTIS 60

Query: 61 NYTFPVTGKMTDW 71
          NY FPV G    W
Sbjct: 61 NYCFPVDGSFEGW 70

BLAST of HG10001908 vs. ExPASy TrEMBL
Match: A0A5D3CZU0 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00110 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 7.0e-13
Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 0

Query: 1  MTVSLEALAMAGIDSNEWAMDTEEWETNTHQMDNDIPPHLLADEDEDEE-NIITSPASNY 60
          M+VSLEALAMAGIDSNEW MD +EWE N   +   +PPHLLADE++DE+   +TS  SNY
Sbjct: 1  MSVSLEALAMAGIDSNEWGMDAQEWERNEIDV---VPPHLLADEEDDEDGEYVTSTISNY 60

Query: 61 TFPVTGKMTDW 71
           F V G    W
Sbjct: 61 CFRVDGSFGGW 68

BLAST of HG10001908 vs. ExPASy TrEMBL
Match: A0A5A7TS68 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G004640 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 7.0e-13
Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 0

Query: 1  MTVSLEALAMAGIDSNEWAMDTEEWETNTHQMDNDIPPHLLADEDEDEE-NIITSPASNY 60
          M+VSLEALAMAGIDSNEW MD +EWE N   +   +PPHLLADE++DE+   +TS  SNY
Sbjct: 1  MSVSLEALAMAGIDSNEWGMDAQEWERNEIDV---VPPHLLADEEDDEDGEYVTSTISNY 60

Query: 61 TFPVTGKMTDW 71
           F V G    W
Sbjct: 61 CFRVDGSFGGW 68

BLAST of HG10001908 vs. ExPASy TrEMBL
Match: A0A6J1FX98 (uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC111447880 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.5e-12
Identity = 42/64 (65.62%), Postives = 49/64 (76.56%), Query Frame = 0

Query: 1  MTVSLEALAMAGIDSNEWAMDTEEWETNTHQMDNDIPPHLLADEDEDEENIITSPASNYT 60
          M+VSLEALAMAGIDSNEWAMD EEWE N  +M+ DIPPHLLADED++E+ + T       
Sbjct: 1  MSVSLEALAMAGIDSNEWAMDAEEWERN--EMEKDIPPHLLADEDDEEDEMSTK------ 56

Query: 61 FPVT 65
          FP T
Sbjct: 61 FPAT 56

BLAST of HG10001908 vs. TAIR 10
Match: AT2G22320.1 (unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 3.1e-05
Identity = 22/45 (48.89%), Postives = 31/45 (68.89%), Query Frame = 0

Query: 5  LEALAMAGIDSNEWAMDTEEWETNTHQMDNDIPPHLLADEDEDEE 50
          +EALAMAG+D  EW +  EEWE      ++ +P HLLAD+ ++EE
Sbjct: 1  MEALAMAGVDYQEWGLSIEEWEL----QESVVPLHLLADDFKEEE 41

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7015383.14.8e-1670.77hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6577295.14.8e-1670.77hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8649147.12.9e-1385.71hypothetical protein Csa_014525, partial [Cucumis sativus][more]
KAE8637184.16.5e-1357.95hypothetical protein CSA_023573, partial [Cucumis sativus] >KAE8637242.1 hypothe... [more]
TYK16880.11.4e-1259.15Tetratricopeptide-like helical [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KU901.5e-1559.57Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1[more]
A0A0A0KWE74.4e-1563.01Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1[more]
A0A5D3CZU07.0e-1359.15Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5A7TS687.0e-1359.15Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A6J1FX983.5e-1265.63uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC1114478... [more]
Match NameE-valueIdentityDescription
AT2G22320.13.1e-0548.89unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacter... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10001908.1HG10001908.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane