HG10001907 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10001907
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Tetratricopeptide-like helical
Location	Chr11: 1583999 .. 1584331 (+)
RNA-Seq Expression	HG10001907
Synteny	HG10001907

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGCTATGGACGCTCAAGAATGGGAAAGAAACGAAACCGAGATCGACGTTCCACTGCATTTATTAGCCGATGAAGTTGAAGATGACGACGACGAAAACGTAACGAGTATTGTGAGTAATAGTGTCCCTTGCATTTGGGGGATTTTTTGTAGTTTAAGCAAAGCCATAGAGAAAAAGGCTTCTAATGGGATGAACTCCGTGAGAACAATGGTGGGAACTATTTTAGGGTTCTTTATGGTGATGACCATCAAGATAATTAGTGCACAAAGATCCAAGTTGTAA

mRNA sequence

ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGCTATGGACGCTCAAGAATGGGAAAGAAACGAAACCGAGATCGACGTTCCACTGCATTTATTAGCCGATGAAGTTGAAGATGACGACGACGAAAACGTAACGAGTATTGTGAGTAATAGTGTCCCTTGCATTTGGGGGATTTTTTGTAGTTTAAGCAAAGCCATAGAGAAAAAGGCTTCTAATGGGATGAACTCCGTGAGAACAATGGTGGGAACTATTTTAGGGTTCTTTATGGTGATGACCATCAAGATAATTAGTGCACAAAGATCCAAGTTGTAA

Coding sequence (CDS)

ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGCTATGGACGCTCAAGAATGGGAAAGAAACGAAACCGAGATCGACGTTCCACTGCATTTATTAGCCGATGAAGTTGAAGATGACGACGACGAAAACGTAACGAGTATTGTGAGTAATAGTGTCCCTTGCATTTGGGGGATTTTTTGTAGTTTAAGCAAAGCCATAGAGAAAAAGGCTTCTAATGGGATGAACTCCGTGAGAACAATGGTGGGAACTATTTTAGGGTTCTTTATGGTGATGACCATCAAGATAATTAGTGCACAAAGATCCAAGTTGTAA

Protein sequence

MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDVPLHLLADEVEDDDDENVTSIVSNSVPCIWGIFCSLSKAIEKKASNGMNSVRTMVGTILGFFMVMTIKIISAQRSKL

Homology

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BLAST of HG10001907 vs. NCBI nr
Match: KAG7015383.1 (hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 143.7 bits (361), Expect = 9.7e-31
Identity = 80/130 (61.54%), Postives = 91/130 (70.00%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDVPLHLLADEVEDDDDENVTSIVSN--- 60
           MSVSLEALAMAGI SNEWAMDA+EWERNE E DVP HLLAD  EDDDD+NVTS VSN   
Sbjct: 1   MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLAD--EDDDDDNVTSTVSNYSF 60

Query: 61  -----------------SVPCIWGIFCSLSKAIEKKASNGMNSVRTMVGTILGFFMVMTI 111
                             + C WGI CSLSK++EK+ASNGM+SVR +V TILGF +V  +
Sbjct: 61  PVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNGMSSVRIIVRTILGFLLVKIL 120

[Close]

BLAST of HG10001907 vs. NCBI nr
Match: KAG6577295.1 (hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 143.7 bits (361), Expect = 9.7e-31
Identity = 80/130 (61.54%), Postives = 91/130 (70.00%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDVPLHLLADEVEDDDDENVTSIVSN--- 60
           MSVSLEALAMAGI SNEWAMDA+EWERNE E DVP HLLAD  EDDDD+NVTS VSN   
Sbjct: 1   MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLAD--EDDDDDNVTSTVSNYSF 60

Query: 61  -----------------SVPCIWGIFCSLSKAIEKKASNGMNSVRTMVGTILGFFMVMTI 111
                             + C WGI CSLSK++EK+ASNGM+SVR +V TILGF +V  +
Sbjct: 61  PVAGFFDSLRREDGGAHDIHCFWGILCSLSKSLEKRASNGMSSVRIIVRTILGFLLVKIL 120

[Close]

BLAST of HG10001907 vs. NCBI nr
Match: TYK16880.1 (Tetratricopeptide-like helical [Cucumis melo var. makuwa])

HSP 1 Score: 141.4 bits (355), Expect = 4.8e-30
Identity = 83/130 (63.85%), Postives = 92/130 (70.77%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDVPLHLLADEVEDDDDENVTSIVSN--- 60
           MSVSLEALAMAGIDSNEW MDAQEWERNE ++ VP HLLADE +D+D E VTS +SN   
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEIDV-VPPHLLADEEDDEDGEYVTSTISNYCF 60

Query: 61  -----------------SVPCIWGIFCSLSKAIEKKASNGMNSVRTMVGTILGFFMVMTI 111
                                I GIF SLSK IEK+ASNGMNSVR +V TILGF MVMT+
Sbjct: 61  RVDGSFGGWRRRDWKADGALRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMTM 120

[Close]

BLAST of HG10001907 vs. NCBI nr
Match: KAA0044707.1 (Tetratricopeptide-like helical [Cucumis melo var. makuwa])

HSP 1 Score: 125.2 bits (313), Expect = 3.6e-25
Identity = 74/119 (62.18%), Postives = 81/119 (68.07%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDVPLHLLADEVEDDDDENVTSIVSN--- 60
           MSVSLEALAMAGIDSNEW MDAQEWERNE ++ VP HLLADE +D+D E VTS +SN   
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEIDV-VPPHLLADEEDDEDGEYVTSTISNYCF 60

Query: 61  -----------------SVPCIWGIFCSLSKAIEKKASNGMNSVRTMVGTILGFFMVMT 100
                                I GIF SLSK IEK+ASNGMNSVR +V TILGF MVMT
Sbjct: 61  RVDGSFGGWRRRDWKADGAHRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMT 118

[Close]

BLAST of HG10001907 vs. NCBI nr
Match: XP_022943015.1 (uncharacterized protein LOC111447880 [Cucurbita moschata])

HSP 1 Score: 110.9 bits (276), Expect = 6.9e-21
Identity = 63/121 (52.07%), Postives = 81/121 (66.94%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDVPLHLLADEVEDDDDENVTSIVSNSVP 60
           MSVSLEALAMAGIDSNEWAMDA+EWERNE E D+P HLLADE +D++DE  T   +    
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEMEKDIPPHLLADE-DDEEDEMSTKFPATRCS 60

Query: 61  C------IWGIFCS------LSKAIEKKASNGMNSVRTMVGTILGFFMVMTIKIISAQRS 110
           C      + G+ CS      L K  EK+  N ++S+  +   ++GF M MTIKII+++RS
Sbjct: 61  CCRKDDGVGGVSCSPTIMWHLRKITEKRDLNCLSSMEIVTSAVVGFLMFMTIKIIASKRS 120

[Close]

BLAST of HG10001907 vs. ExPASy TrEMBL
Match: A0A5D3CZU0 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00110 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.3e-30
Identity = 83/130 (63.85%), Postives = 92/130 (70.77%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDVPLHLLADEVEDDDDENVTSIVSN--- 60
           MSVSLEALAMAGIDSNEW MDAQEWERNE ++ VP HLLADE +D+D E VTS +SN   
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEIDV-VPPHLLADEEDDEDGEYVTSTISNYCF 60

Query: 61  -----------------SVPCIWGIFCSLSKAIEKKASNGMNSVRTMVGTILGFFMVMTI 111
                                I GIF SLSK IEK+ASNGMNSVR +V TILGF MVMT+
Sbjct: 61  RVDGSFGGWRRRDWKADGALRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMTM 120

[Close]

BLAST of HG10001907 vs. ExPASy TrEMBL
Match: A0A0A0KWE7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.6e-29
Identity = 85/134 (63.43%), Postives = 97/134 (72.39%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDVPLHLLADEVEDDD-DENV-TSIVSN- 60
           MSVSLEALAMAGIDSNEWAMDA+EWERNE ++ VP HLLADE +D+D DE+V TS +SN 
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEIDV-VPPHLLADEEDDEDGDEHVTTSTISNY 60

Query: 61  ------------SVPC---------IWGIFCSLSKAIEKKASNGMNSVRTMVGTILGFFM 111
                          C         I GIFCSLSK IEK+ASNGM+SVR +V TILGF M
Sbjct: 61  CFPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGFLM 120

[Close]

BLAST of HG10001907 vs. ExPASy TrEMBL
Match: A0A5A7TS68 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G004640 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.7e-25
Identity = 74/119 (62.18%), Postives = 81/119 (68.07%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDVPLHLLADEVEDDDDENVTSIVSN--- 60
           MSVSLEALAMAGIDSNEW MDAQEWERNE ++ VP HLLADE +D+D E VTS +SN   
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEIDV-VPPHLLADEEDDEDGEYVTSTISNYCF 60

Query: 61  -----------------SVPCIWGIFCSLSKAIEKKASNGMNSVRTMVGTILGFFMVMT 100
                                I GIF SLSK IEK+ASNGMNSVR +V TILGF MVMT
Sbjct: 61  RVDGSFGGWRRRDWKADGAHRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMT 118

[Close]

BLAST of HG10001907 vs. ExPASy TrEMBL
Match: A0A6J1FX98 (uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC111447880 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 3.4e-21
Identity = 63/121 (52.07%), Postives = 81/121 (66.94%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDVPLHLLADEVEDDDDENVTSIVSNSVP 60
           MSVSLEALAMAGIDSNEWAMDA+EWERNE E D+P HLLADE +D++DE  T   +    
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEMEKDIPPHLLADE-DDEEDEMSTKFPATRCS 60

Query: 61  C------IWGIFCS------LSKAIEKKASNGMNSVRTMVGTILGFFMVMTIKIISAQRS 110
           C      + G+ CS      L K  EK+  N ++S+  +   ++GF M MTIKII+++RS
Sbjct: 61  CCRKDDGVGGVSCSPTIMWHLRKITEKRDLNCLSSMEIVTSAVVGFLMFMTIKIIASKRS 120

[Close]

BLAST of HG10001907 vs. ExPASy TrEMBL
Match: A0A0A0KU90 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 5.6e-08
Identity = 45/97 (46.39%), Postives = 58/97 (59.79%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWERNETEID----VPLHLLADEVEDDDDENVTSIVS 60
          M VSLEALAMAGIDSNEWAMDA+EW+ N  +++    +P HLLADE    D+EN+ +   
Sbjct: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADE----DEENIAA--- 60

Query: 61 NSVPCIWG--------IFCS-------LSKAIEKKAS 79
              CI G        +FC+       L K +EK+AS
Sbjct: 61 -KELCISGHRKDDGLVVFCAFRRSYAILRKMMEKRAS 89

[Close]

BLAST of HG10001907 vs. TAIR 10
Match: AT2G22320.1 (unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 51.6 bits (122), Expect = 4.7e-07
Identity = 32/85 (37.65%), Postives = 46/85 (54.12%), Query Frame = 0


Query: 5  LEALAMAGIDSNEWAMDAQEWERNETEIDVPLHLLADEV----------EDDDDENVTSI 64
          +EALAMAG+D  EW +  +EWE  E+   VPLHLLAD+           ++DDD+ V   
Sbjct: 1  MEALAMAGVDYQEWGLSIEEWELQESV--VPLHLLADDFKEEEQEEDHQDNDDDDRVLDG 60

Query: 65 VSNSVPCIWGIFCSLSKAIEKKASN 80
          ++        I  S+ K IE+  S+
Sbjct: 61 LAVKQSVTRDIRASVGKFIEQSMSH 83

The following BLAST results are available for this feature:

BLAST of HG10001907 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7015383.1	9.7e-31	61.54	hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6577295.1	9.7e-31	61.54	hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sorori...	[more]
TYK16880.1	4.8e-30	63.85	Tetratricopeptide-like helical [Cucumis melo var. makuwa]	[more]
KAA0044707.1	3.6e-25	62.18	Tetratricopeptide-like helical [Cucumis melo var. makuwa]	[more]
XP_022943015.1	6.9e-21	52.07	uncharacterized protein LOC111447880 [Cucurbita moschata]	[more]

BLAST of HG10001907 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10001907 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CZU0	2.3e-30	63.85	Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A0A0KWE7	2.6e-29	63.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1	[more]
A0A5A7TS68	1.7e-25	62.18	Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A6J1FX98	3.4e-21	52.07	uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC1114478...	[more]
A0A0A0KU90	5.6e-08	46.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1	[more]

BLAST of HG10001907 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G22320.1	4.7e-07	37.65	unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacter...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10001907.1	HG10001907.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane