HG10001846 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10001846
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr11: 1026682 .. 1027989 (+)
RNA-Seq ExpressionHG10001846
SyntenyHG10001846
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTAAGAGATCTCTCATTTGGCAATTAGTTTTGGTTTTAATTGCCATTCTAAGTTTTAGTGTTGCAGCAAGAAATTTGGGTTCTGCTCATCAAACTGCTTGTAAGTGGATCCTATATACCTATTTCTTATTGATGGATTGTTTATGGGGAAAACCATTTTTAAATTTAGTCAAATTTTAGAAGTAAAAAAGAGGTAAAATGACTTTAATTTGCATTTATGAACAAATTAGATATTGTTGTTTGTTTTCTATTATGCATGTGTTTTGGTAGTTCTTTTTGAATAATTCGATAAAATTGAAACGATACGAAGAAGATTAGTGTAGTCCTTGTGCATGGATGACATGCACAAATTGAGAAATTTATCTAAATTTTTATTAAAAATACGTGTTTGCATAGATTATCTTGGATGTTTTTTAGACATGATTGGGTAGTTTTGTGTAACTTATTTGTTTGAGTAACCAACAAAATATTCTTTTGTCCATTTTGACATTGAGCTCTTCTCTAGCTTCCCTTCATATATTGGAATGAACTATTTTAGGTCTCTGGGGTATGATGAAGGGCATGCTAAGAATGTGTCAACCTAGTTGAGATATTCGAGATGCATCTATCGATCATTAATTCTTTTGTCCTTTAGTATATTTCTCTAAAAAAAACCAACAATTCTTTTGTCCTTTAGTATATTTCTCTAAAAAAAAACCAACAATGTTCTTCCCATTCAAATTAGAGGGAGTATTAGTTTAACCATTAATCCAGAGGTTTTGTATCTGATTTAGGGCTTAAGTTTAGGATTTATTTTGCAAGGAATTTTTTTCTGTTTATTCAAGTGTGTGTGTATATATATATATATATATAAACAACAAAATAATTATCCGATTCAATCCAAGCCAAAAATACGAAAATTTGGGTTCGGTCATGTTGGATACTATTGTTTGGTTCTTTCAGGTTATAGAGTCAATCAACCGGCCGAAATTTTGGGTTGGTCCAAAAAAATTATTCTAATCCAATCCAACCTGGATATACCTCTATATTTCACAACTTTATCTTTTATGTGCTTCTAAATTGTAGCTAAACATAAATTTCTTAAATCATTTAAAACCATTTTAAAGCTAGAGAAAGGCCAATATACTAGACAAGTTGTATATATTGAATGGATCATACTTTCCCACTATAAATATGTTTCAATATCTAATTATTTGTTTTTTCTTATCTTTTTCAGACAAGGATGTTGTGGGAATCAAAAGCATAAAAAAGGTTGCTAAACCCATTCCAAGGAAAGATAAACCTAGGGGTGGAAATTTCTAA

mRNA sequence

ATGGCTTCTAAGAGATCTCTCATTTGGCAATTAGTTTTGGTTTTAATTGCCATTCTAAGTTTTAGTGTTGCAGCAAGAAATTTGGGTTCTGCTCATCAAACTGCTTACAAGGATGTTGTGGGAATCAAAAGCATAAAAAAGGTTGCTAAACCCATTCCAAGGAAAGATAAACCTAGGGGTGGAAATTTCTAA

Coding sequence (CDS)

ATGGCTTCTAAGAGATCTCTCATTTGGCAATTAGTTTTGGTTTTAATTGCCATTCTAAGTTTTAGTGTTGCAGCAAGAAATTTGGGTTCTGCTCATCAAACTGCTTACAAGGATGTTGTGGGAATCAAAAGCATAAAAAAGGTTGCTAAACCCATTCCAAGGAAAGATAAACCTAGGGGTGGAAATTTCTAA

Protein sequence

MASKRSLIWQLVLVLIAILSFSVAARNLGSAHQTAYKDVVGIKSIKKVAKPIPRKDKPRGGNF
Homology
[Close]
BLAST of HG10001846 vs. NCBI nr
Match: KGN53139.1 (hypothetical protein Csa_015279 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 6.6e-16
Identity = 49/63 (77.78%), Postives = 55/63 (87.30%), Query Frame = 0 

Query: 1  MASKRSLIWQLVLVLIAILSFSVAARNLGSAHQTAYKDVVGIKSIKKVAKPIPRKDKPRG 60
          MASK SLIWQLV+VL+AILS SVAAR+  S  QTAYKD VGIKSIKKV KP+P+KDKPRG
Sbjct: 1  MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDKPRG 60

Query: 61 GNF 64
          GN+
Sbjct: 61 GNY 63

[Close]
BLAST of HG10001846 vs. ExPASy TrEMBL
Match: A0A0A0KW87 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022260 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.2e-16
Identity = 49/63 (77.78%), Postives = 55/63 (87.30%), Query Frame = 0 

Query: 1  MASKRSLIWQLVLVLIAILSFSVAARNLGSAHQTAYKDVVGIKSIKKVAKPIPRKDKPRG 60
          MASK SLIWQLV+VL+AILS SVAAR+  S  QTAYKD VGIKSIKKV KP+P+KDKPRG
Sbjct: 1  MASKISLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDKPRG 60

Query: 61 GNF 64
          GN+
Sbjct: 61 GNY 63

The following BLAST results are available for this feature:
BLAST of HG10001846 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53139.16.6e-1677.78hypothetical protein Csa_015279 [Cucumis sativus][more]
BLAST of HG10001846 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10001846 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KW873.2e-1677.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022260 PE=4 SV=1[more]
BLAST of HG10001846 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10001846.1HG10001846.1mRNA