HG10001844 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10001844
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr11: 1015869 .. 1016432 (+)
RNA-Seq Expression	HG10001844
Synteny	HG10001844

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCAATTATTTGGAAACTCTTCTTGATCATCACACTCATCTTAGCTTCAAATGTTCATTCAAGGAGATTGGATTCCATCCCCTATATTCATCGTAAGCCTCCTCACTTTTTTTTTTTCTTTTTTCTTTTTATTTTAATTTTCTCTTCTATCACTTTTAATATCATGTCTTTAATTAACTCATTAGTTGCCCCCATTAGAGTTGATATTGGTTTAAATTTAATTTATTAATTCCTTTGGTTATAATTACTTTATTATTTTGTGGTTTTTTTATGCTAATTTCAGCAACTCACCAAATGTAGGTATGAAGTATGCAGAGACAAATAATACAATTGCTTCACCACCTAATACCCAAAATAATGAAGATGGTAGGTTTTTAATATTAGGAAATATTGAAATATATACAAATATATATTCATATTATATAGAGATATGAACTATTTTTCATAATTTCCTAATATTGTAGGTGTGAAGAATAATGCAGAAACAAATAATACAATTGTTGCTGCTCCACCACCAGCCAAAAATGAAGATGGTGTTTGGAATGGAAACTTAATTTGA

mRNA sequence

ATGGCTTCAATTATTTGGAAACTCTTCTTGATCATCACACTCATCTTAGCTTCAAATGTTCATTCAAGGAGATTGGATTCCATCCCCTATATTCATCGTATGAAGTATGCAGAGACAAATAATACAATTGCTTCACCACCTAATACCCAAAATAATGAAGATGGTGTGAAGAATAATGCAGAAACAAATAATACAATTGTTGCTGCTCCACCACCAGCCAAAAATGAAGATGGTGTTTGGAATGGAAACTTAATTTGA

Coding sequence (CDS)

ATGGCTTCAATTATTTGGAAACTCTTCTTGATCATCACACTCATCTTAGCTTCAAATGTTCATTCAAGGAGATTGGATTCCATCCCCTATATTCATCGTATGAAGTATGCAGAGACAAATAATACAATTGCTTCACCACCTAATACCCAAAATAATGAAGATGGTGTGAAGAATAATGCAGAAACAAATAATACAATTGTTGCTGCTCCACCACCAGCCAAAAATGAAGATGGTGTTTGGAATGGAAACTTAATTTGA

Protein sequence

MASIIWKLFLIITLILASNVHSRRLDSIPYIHRMKYAETNNTIASPPNTQNNEDGVKNNAETNNTIVAAPPPAKNEDGVWNGNLI

Homology

[Close]

BLAST of HG10001844 vs. NCBI nr
Match: KGN53137.1 (hypothetical protein Csa_015300 [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 2.3e-24
Identity = 67/85 (78.82%), Postives = 74/85 (87.06%), Query Frame = 0


Query: 1  MASIIWKLFLIITLILASN-VHSRRLDSIPYIHRMKYAETN-NTIASPPNTQNNEDGVKN 60
          MASIIWKLFLIITLILASN VH+RR  S  YIHRM+YAE N +TIA PPNTQN+EDG+KN
Sbjct: 1  MASIIWKLFLIITLILASNYVHARRSPSF-YIHRMEYAELNVDTIAQPPNTQNDEDGMKN 60

Query: 61 NAETNNTIVAAPPPAKNEDGVWNGN 84
          N ETNNT  AAPPPAK+EDGVW+GN
Sbjct: 61 NTETNNTTTAAPPPAKHEDGVWDGN 84

[Close]

BLAST of HG10001844 vs. NCBI nr
Match: KAA0044640.1 (hypothetical protein E6C27_scaffold46G003950 [Cucumis melo var. makuwa] >TYK16948.1 hypothetical protein E5676_scaffold130G00850 [Cucumis melo var. makuwa])

HSP 1 Score: 120.2 bits (300), Expect = 8.8e-24
Identity = 68/86 (79.07%), Postives = 73/86 (84.88%), Query Frame = 0


Query: 1  MASIIWKLFLIITLILA-SNVHSRRLDSIPYIHRMKYAETN--NTIASPPNTQNNEDGVK 60
          MASIIWKLFLIITLILA SNVH+R   SI YIH MK AE N  NTIA PP+TQN+EDG+K
Sbjct: 1  MASIIWKLFLIITLILASSNVHARISHSI-YIHGMKSAEINNVNTIAQPPSTQNDEDGMK 60

Query: 61 NNAETNNTIVAAPPPAKNEDGVWNGN 84
          NN  TNNTI+AAPPPAKNEDGVWNGN
Sbjct: 61 NNTATNNTIIAAPPPAKNEDGVWNGN 85

[Close]

BLAST of HG10001844 vs. ExPASy TrEMBL
Match: A0A0A0KXJ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022240 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.1e-24
Identity = 67/85 (78.82%), Postives = 74/85 (87.06%), Query Frame = 0


Query: 1  MASIIWKLFLIITLILASN-VHSRRLDSIPYIHRMKYAETN-NTIASPPNTQNNEDGVKN 60
          MASIIWKLFLIITLILASN VH+RR  S  YIHRM+YAE N +TIA PPNTQN+EDG+KN
Sbjct: 1  MASIIWKLFLIITLILASNYVHARRSPSF-YIHRMEYAELNVDTIAQPPNTQNDEDGMKN 60

Query: 61 NAETNNTIVAAPPPAKNEDGVWNGN 84
          N ETNNT  AAPPPAK+EDGVW+GN
Sbjct: 61 NTETNNTTTAAPPPAKHEDGVWDGN 84

[Close]

BLAST of HG10001844 vs. ExPASy TrEMBL
Match: A0A5D3D0C9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00850 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 4.3e-24
Identity = 68/86 (79.07%), Postives = 73/86 (84.88%), Query Frame = 0


Query: 1  MASIIWKLFLIITLILA-SNVHSRRLDSIPYIHRMKYAETN--NTIASPPNTQNNEDGVK 60
          MASIIWKLFLIITLILA SNVH+R   SI YIH MK AE N  NTIA PP+TQN+EDG+K
Sbjct: 1  MASIIWKLFLIITLILASSNVHARISHSI-YIHGMKSAEINNVNTIAQPPSTQNDEDGMK 60

Query: 61 NNAETNNTIVAAPPPAKNEDGVWNGN 84
          NN  TNNTI+AAPPPAKNEDGVWNGN
Sbjct: 61 NNTATNNTIIAAPPPAKNEDGVWNGN 85

The following BLAST results are available for this feature:

BLAST of HG10001844 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53137.1	2.3e-24	78.82	hypothetical protein Csa_015300 [Cucumis sativus]	[more]
KAA0044640.1	8.8e-24	79.07	hypothetical protein E6C27_scaffold46G003950 [Cucumis melo var. makuwa] >TYK1694...	[more]

BLAST of HG10001844 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10001844 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXJ2	1.1e-24	78.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022240 PE=4 SV=1	[more]
A0A5D3D0C9	4.3e-24	79.07	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of HG10001844 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10001844.1	HG10001844.1	mRNA