HG10001814 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10001814
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptiondisease resistance protein RGA2-like
LocationChr11: 660405 .. 660626 (+)
RNA-Seq ExpressionHG10001814
SyntenyHG10001814
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGAGTTCCTATGGACTTTTGCTGTGCAAGAAGTGTTGAAGAATGTATTGAAACTTGCAGCTGACCAAATTGGTGTGGCATGGGGCTTGGACAAGGAGCTTTCAAACCTCTCCAAATGGCTACTCAAAGCTGAAGCTATTTTAGGTGACATTAACAGAAAAAAATTACACCATAATTCTGTGAGACTGGGCGGAGGATCTTCAACATGTTGTCCATGA

mRNA sequence

ATGGCTGAGTTCCTATGGACTTTTGCTGTGCAAGAAGTGTTGAAGAATGTATTGAAACTTGCAGCTGACCAAATTGGTGTGGCATGGGGCTTGGACAAGGAGCTTTCAAACCTCTCCAAATGGCTACTCAAAGCTGAAGCTATTTTAGGTGACATTAACAGAAAAAAATTACACCATAATTCTGTGAGACTGGGCGGAGGATCTTCAACATGTTGTCCATGA

Coding sequence (CDS)

ATGGCTGAGTTCCTATGGACTTTTGCTGTGCAAGAAGTGTTGAAGAATGTATTGAAACTTGCAGCTGACCAAATTGGTGTGGCATGGGGCTTGGACAAGGAGCTTTCAAACCTCTCCAAATGGCTACTCAAAGCTGAAGCTATTTTAGGTGACATTAACAGAAAAAAATTACACCATAATTCTGTGAGACTGGGCGGAGGATCTTCAACATGTTGTCCATGA

Protein sequence

MAEFLWTFAVQEVLKNVLKLAADQIGVAWGLDKELSNLSKWLLKAEAILGDINRKKLHHNSVRLGGGSSTCCP
Homology
[Close]
BLAST of HG10001814 vs. NCBI nr
Match: XP_004152283.3 (putative disease resistance protein RGA3 isoform X1 [Cucumis sativus] >KGN53113.2 hypothetical protein Csa_014548 [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 1.7e-23
Identity = 58/64 (90.62%), Postives = 62/64 (96.88%), Query Frame = 0 

Query: 1  MAEFLWTFAVQEVLKNVLKLAADQIGVAWGLDKELSNLSKWLLKAEAILGDINRKKLHHN 60
          MAEFLWTFAVQEVLK VLKLAADQIG+AWGLDKELSNLS+WLLKAEAILG+INRKKLH +
Sbjct: 1  MAEFLWTFAVQEVLKKVLKLAADQIGLAWGLDKELSNLSQWLLKAEAILGEINRKKLHPS 60

Query: 61 SVRL 65
          SVRL
Sbjct: 61 SVRL 64

[Close]
BLAST of HG10001814 vs. NCBI nr
Match: XP_022145177.1 (putative disease resistance protein RGA3 [Momordica charantia])

HSP 1 Score: 112.1 bits (279), Expect = 2.1e-21
Identity = 51/64 (79.69%), Postives = 60/64 (93.75%), Query Frame = 0 

Query: 1  MAEFLWTFAVQEVLKNVLKLAADQIGVAWGLDKELSNLSKWLLKAEAILGDINRKKLHHN 60
          MAEFLWTFAVQEVL+ ++K+AA QIG+AWGL+KELS L+KWLLKAE ILGDINR+KLHH+
Sbjct: 1  MAEFLWTFAVQEVLRKIVKVAAQQIGLAWGLEKELSKLTKWLLKAETILGDINRRKLHHD 60

Query: 61 SVRL 65
          SVRL
Sbjct: 61 SVRL 64

[Close]
BLAST of HG10001814 vs. NCBI nr
Match: XP_008453956.1 (PREDICTED: putative disease resistance protein RGA3 isoform X1 [Cucumis melo] >KAA0044619.1 putative disease resistance protein RGA3 isoform X1 [Cucumis melo var. makuwa] >TYK16970.1 putative disease resistance protein RGA3 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 2.7e-21
Identity = 54/64 (84.38%), Postives = 60/64 (93.75%), Query Frame = 0 

Query: 1  MAEFLWTFAVQEVLKNVLKLAADQIGVAWGLDKELSNLSKWLLKAEAILGDINRKKLHHN 60
          MAEFLWTFAVQEVLK VL LAAD+IG+AWGL+KELS LS+WLLK+EAILGDINRKKLH +
Sbjct: 1  MAEFLWTFAVQEVLKKVLTLAADKIGLAWGLEKELSELSQWLLKSEAILGDINRKKLHPS 60

Query: 61 SVRL 65
          SVRL
Sbjct: 61 SVRL 64

[Close]
BLAST of HG10001814 vs. NCBI nr
Match: XP_022145171.1 (putative disease resistance protein RGA3 [Momordica charantia] >XP_022145172.1 putative disease resistance protein RGA3 [Momordica charantia] >XP_022145173.1 putative disease resistance protein RGA3 [Momordica charantia] >XP_022145174.1 putative disease resistance protein RGA3 [Momordica charantia] >XP_022145175.1 putative disease resistance protein RGA3 [Momordica charantia])

HSP 1 Score: 110.9 bits (276), Expect = 4.6e-21
Identity = 56/64 (87.50%), Postives = 57/64 (89.06%), Query Frame = 0 

Query: 1  MAEFLWTFAVQEVLKNVLKLAADQIGVAWGLDKELSNLSKWLLKAEAILGDINRKKLHHN 60
          MAEFLWTFAVQEVLK VLKLAA+QIGVAWGLDKELS L K LLKAE ILGDINRKKL H 
Sbjct: 1  MAEFLWTFAVQEVLKKVLKLAAEQIGVAWGLDKELSKLRKRLLKAETILGDINRKKLRHE 60

Query: 61 SVRL 65
          SVRL
Sbjct: 61 SVRL 64

[Close]
BLAST of HG10001814 vs. NCBI nr
Match: XP_022145126.1 (probable disease resistance RPP8-like protein 2 [Momordica charantia])

HSP 1 Score: 107.8 bits (268), Expect = 3.9e-20
Identity = 51/64 (79.69%), Postives = 58/64 (90.62%), Query Frame = 0 

Query: 1  MAEFLWTFAVQEVLKNVLKLAADQIGVAWGLDKELSNLSKWLLKAEAILGDINRKKLHHN 60
          MAEFLWTFAVQEVLK V+KL+A+QIG+AWGL++EL  L+ WLLKAEAIL DINRKKLHH 
Sbjct: 1  MAEFLWTFAVQEVLKKVVKLSAEQIGLAWGLEEELCKLTNWLLKAEAILCDINRKKLHHE 60

Query: 61 SVRL 65
          SVRL
Sbjct: 61 SVRL 64

[Close]
BLAST of HG10001814 vs. ExPASy TrEMBL
Match: A0A0A0KXG9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G016460 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 8.2e-24
Identity = 58/64 (90.62%), Postives = 62/64 (96.88%), Query Frame = 0 

Query: 1  MAEFLWTFAVQEVLKNVLKLAADQIGVAWGLDKELSNLSKWLLKAEAILGDINRKKLHHN 60
          MAEFLWTFAVQEVLK VLKLAADQIG+AWGLDKELSNLS+WLLKAEAILG+INRKKLH +
Sbjct: 1  MAEFLWTFAVQEVLKKVLKLAADQIGLAWGLDKELSNLSQWLLKAEAILGEINRKKLHPS 60

Query: 61 SVRL 65
          SVRL
Sbjct: 61 SVRL 64

[Close]
BLAST of HG10001814 vs. ExPASy TrEMBL
Match: A0A6J1CVR6 (putative disease resistance protein RGA3 OS=Momordica charantia OX=3673 GN=LOC111014685 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.0e-21
Identity = 51/64 (79.69%), Postives = 60/64 (93.75%), Query Frame = 0 

Query: 1  MAEFLWTFAVQEVLKNVLKLAADQIGVAWGLDKELSNLSKWLLKAEAILGDINRKKLHHN 60
          MAEFLWTFAVQEVL+ ++K+AA QIG+AWGL+KELS L+KWLLKAE ILGDINR+KLHH+
Sbjct: 1  MAEFLWTFAVQEVLRKIVKVAAQQIGLAWGLEKELSKLTKWLLKAETILGDINRRKLHHD 60

Query: 61 SVRL 65
          SVRL
Sbjct: 61 SVRL 64

[Close]
BLAST of HG10001814 vs. ExPASy TrEMBL
Match: A0A5D3D021 (Putative disease resistance protein RGA3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001110 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.3e-21
Identity = 54/64 (84.38%), Postives = 60/64 (93.75%), Query Frame = 0 

Query: 1  MAEFLWTFAVQEVLKNVLKLAADQIGVAWGLDKELSNLSKWLLKAEAILGDINRKKLHHN 60
          MAEFLWTFAVQEVLK VL LAAD+IG+AWGL+KELS LS+WLLK+EAILGDINRKKLH +
Sbjct: 1  MAEFLWTFAVQEVLKKVLTLAADKIGLAWGLEKELSELSQWLLKSEAILGDINRKKLHPS 60

Query: 61 SVRL 65
          SVRL
Sbjct: 61 SVRL 64

[Close]
BLAST of HG10001814 vs. ExPASy TrEMBL
Match: A0A1S3BYA2 (putative disease resistance protein RGA3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494523 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.3e-21
Identity = 54/64 (84.38%), Postives = 60/64 (93.75%), Query Frame = 0 

Query: 1  MAEFLWTFAVQEVLKNVLKLAADQIGVAWGLDKELSNLSKWLLKAEAILGDINRKKLHHN 60
          MAEFLWTFAVQEVLK VL LAAD+IG+AWGL+KELS LS+WLLK+EAILGDINRKKLH +
Sbjct: 1  MAEFLWTFAVQEVLKKVLTLAADKIGLAWGLEKELSELSQWLLKSEAILGDINRKKLHPS 60

Query: 61 SVRL 65
          SVRL
Sbjct: 61 SVRL 64

[Close]
BLAST of HG10001814 vs. ExPASy TrEMBL
Match: A0A6J1CVR3 (putative disease resistance protein RGA3 OS=Momordica charantia OX=3673 GN=LOC111014682 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.2e-21
Identity = 56/64 (87.50%), Postives = 57/64 (89.06%), Query Frame = 0 

Query: 1  MAEFLWTFAVQEVLKNVLKLAADQIGVAWGLDKELSNLSKWLLKAEAILGDINRKKLHHN 60
          MAEFLWTFAVQEVLK VLKLAA+QIGVAWGLDKELS L K LLKAE ILGDINRKKL H 
Sbjct: 1  MAEFLWTFAVQEVLKKVLKLAAEQIGVAWGLDKELSKLRKRLLKAETILGDINRKKLRHE 60

Query: 61 SVRL 65
          SVRL
Sbjct: 61 SVRL 64

The following BLAST results are available for this feature:
BLAST of HG10001814 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004152283.31.7e-2390.63putative disease resistance protein RGA3 isoform X1 [Cucumis sativus] >KGN53113.... [more]
XP_022145177.12.1e-2179.69putative disease resistance protein RGA3 [Momordica charantia][more]
XP_008453956.12.7e-2184.38PREDICTED: putative disease resistance protein RGA3 isoform X1 [Cucumis melo] >K... [more]
XP_022145171.14.6e-2187.50putative disease resistance protein RGA3 [Momordica charantia] >XP_022145172.1 p... [more]
XP_022145126.13.9e-2079.69probable disease resistance RPP8-like protein 2 [Momordica charantia][more]
BLAST of HG10001814 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10001814 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXG98.2e-2490.63Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G016460 PE=4 SV=1[more]
A0A6J1CVR61.0e-2179.69putative disease resistance protein RGA3 OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A5D3D0211.3e-2184.38Putative disease resistance protein RGA3 isoform X1 OS=Cucumis melo var. makuwa ... [more]
A0A1S3BYA21.3e-2184.38putative disease resistance protein RGA3 isoform X1 OS=Cucumis melo OX=3656 GN=L... [more]
A0A6J1CVR32.2e-2187.50putative disease resistance protein RGA3 OS=Momordica charantia OX=3673 GN=LOC11... [more]
BLAST of HG10001814 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10001814.1HG10001814.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006952 defense response
molecular_function GO:0043531 ADP binding