HG10001757 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10001757
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionATP-binding/protein serine/threonine kinase
LocationChr11: 200913 .. 201232 (+)
RNA-Seq ExpressionHG10001757
SyntenyHG10001757
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAGTCGTCGACTAAGTTGACTTGCATGCTATTGATGTTCTTCATTGCCTCTGGTATATAAATTAATTTTAATTTTCTTCTTACGTATATGTTTTCCTTTTTTTTTTTTTTTTTTTGTAATGTTTACCTTGAATAACAAACATCAATTAAAATGTTTCAGGAACATTGTTTGTATCAGAAGGAAGAAATGTAGTAAATGTTCCATGCAATACGATTAATGATTGTTCCGATCCAATCAAATGTGATTGCAACTTCCACTTATGTTTTTGCCATGCAAAATCTGAAAAGAAATTTTTTGACAAGGTTGTGCCATAA

mRNA sequence

ATGGAAAAGTCGTCGACTAAGTTGACTTGCATGCTATTGATGTTCTTCATTGCCTCTGGAACATTGTTTGTATCAGAAGGAAGAAATGTAGTAAATGTTCCATGCAATACGATTAATGATTGTTCCGATCCAATCAAATGTGATTGCAACTTCCACTTATGTTTTTGCCATGCAAAATCTGAAAAGAAATTTTTTGACAAGGTTGTGCCATAA

Coding sequence (CDS)

ATGGAAAAGTCGTCGACTAAGTTGACTTGCATGCTATTGATGTTCTTCATTGCCTCTGGAACATTGTTTGTATCAGAAGGAAGAAATGTAGTAAATGTTCCATGCAATACGATTAATGATTGTTCCGATCCAATCAAATGTGATTGCAACTTCCACTTATGTTTTTGCCATGCAAAATCTGAAAAGAAATTTTTTGACAAGGTTGTGCCATAA

Protein sequence

MEKSSTKLTCMLLMFFIASGTLFVSEGRNVVNVPCNTINDCSDPIKCDCNFHLCFCHAKSEKKFFDKVVP
Homology
BLAST of HG10001757 vs. NCBI nr
Match: KAE8651915.1 (hypothetical protein Csa_006059 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 4.4e-13
Identity = 42/71 (59.15%), Postives = 48/71 (67.61%), Query Frame = 0

Query: 1  MEKSSTKLTCMLLMFFIASGTLFVSEGRNVVNVPCNTINDCSDPIKCDCNFHLCFCHAKS 60
          M KSSTKL  +LLMFFI S  +FV+  RNVVN+PCN+  DCSDP  CDC  +LCFCH   
Sbjct: 1  MVKSSTKLALLLLMFFIIS-EMFVANARNVVNIPCNSRIDCSDPWDCDCKLNLCFCHPHG 60

Query: 61 -EKKFFDKVVP 71
           EKKF     P
Sbjct: 61 LEKKFLHNAFP 70

BLAST of HG10001757 vs. NCBI nr
Match: KGN61957.1 (hypothetical protein Csa_006779 [Cucumis sativus])

HSP 1 Score: 80.1 bits (196), Expect = 8.4e-12
Identity = 39/71 (54.93%), Postives = 43/71 (60.56%), Query Frame = 0

Query: 1  MEKSSTKLTCMLLMFFIASGTLFVSEGRNVVNVPCNTINDCSDPIKCDCNFHLCFCHAKS 60
          M K  TK     LM FI S  LFVS+ RNVVN+PC +  DCSDP  CDC  +LCFCH   
Sbjct: 1  MVKPLTKFALFFLMVFIISEKLFVSDARNVVNIPCQSRIDCSDPWDCDCKLNLCFCHPHG 60

Query: 61 -EKKFFDKVVP 71
           EKKF  K  P
Sbjct: 61 LEKKFLHKAFP 71

BLAST of HG10001757 vs. NCBI nr
Match: EOY32074.1 (Uncharacterized protein TCM_039540 [Theobroma cacao])

HSP 1 Score: 64.3 bits (155), Expect = 4.7e-07
Identity = 29/57 (50.88%), Postives = 36/57 (63.16%), Query Frame = 0

Query: 1  MEKSSTKLTCMLLMFFIASGTLFVSEGRNVVNVPCNTINDCSDPIKCDCNFHLCFCH 58
          MEK S KL  +  +   A G     E RN +N PCNT+ DC+DPIKC+C  +LCFCH
Sbjct: 1  MEKFSFKLIFLAALLVFALGLQVGVEARN-INTPCNTVKDCADPIKCECRINLCFCH 56

BLAST of HG10001757 vs. NCBI nr
Match: EOY32073.1 (Uncharacterized protein TCM_039538 [Theobroma cacao])

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 28/57 (49.12%), Postives = 36/57 (63.16%), Query Frame = 0

Query: 1  MEKSSTKLTCMLLMFFIASGTLFVSEGRNVVNVPCNTINDCSDPIKCDCNFHLCFCH 58
          M+K S KL  +  +   A G     E RN +N PCNT+ DC+DPIKC+C  +LCFCH
Sbjct: 1  MDKFSFKLIFLATLLVFALGLQVGVEARN-INTPCNTVKDCADPIKCECRMNLCFCH 56

BLAST of HG10001757 vs. NCBI nr
Match: EXB53848.1 (hypothetical protein L484_006768 [Morus notabilis])

HSP 1 Score: 59.3 bits (142), Expect = 1.5e-05
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 0

Query: 1  MEKSSTKLTCMLLMFFIASGTLFV-SEGRNVVNVPCNTINDCSDPIKCDCNF-HLCFCHA 60
          MEK S ++  +++MF +A G+  +  E RNVVN+PCNT+ DC DP KC C++  LC CH 
Sbjct: 1  MEKVS-RMAILVVMFLLALGSHELGGEARNVVNIPCNTVGDCFDPNKCICSYLKLCMCH- 60

Query: 61 KSEKKF 65
            E KF
Sbjct: 61 -QELKF 63

BLAST of HG10001757 vs. ExPASy TrEMBL
Match: A0A0A0LJR0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G285280 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.6e-14
Identity = 43/71 (60.56%), Postives = 49/71 (69.01%), Query Frame = 0

Query: 1  MEKSSTKLTCMLLMFFIASGTLFVSEGRNVVNVPCNTINDCSDPIKCDCNFHLCFCHAKS 60
          M KSSTKL  +LLMFFI S T FV++ RNVVN+PCN+  DCSDP  CDC  +LCFCH   
Sbjct: 1  MVKSSTKLALLLLMFFIISET-FVADARNVVNIPCNSRIDCSDPWDCDCKLNLCFCHPHG 60

Query: 61 -EKKFFDKVVP 71
           EKKF     P
Sbjct: 61 LEKKFLHNAFP 70

BLAST of HG10001757 vs. ExPASy TrEMBL
Match: A0A0A0LMG3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G276990 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.0e-12
Identity = 39/71 (54.93%), Postives = 43/71 (60.56%), Query Frame = 0

Query: 1  MEKSSTKLTCMLLMFFIASGTLFVSEGRNVVNVPCNTINDCSDPIKCDCNFHLCFCHAKS 60
          M K  TK     LM FI S  LFVS+ RNVVN+PC +  DCSDP  CDC  +LCFCH   
Sbjct: 1  MVKPLTKFALFFLMVFIISEKLFVSDARNVVNIPCQSRIDCSDPWDCDCKLNLCFCHPHG 60

Query: 61 -EKKFFDKVVP 71
           EKKF  K  P
Sbjct: 61 LEKKFLHKAFP 71

BLAST of HG10001757 vs. ExPASy TrEMBL
Match: A0A2N9FRQ0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17804 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.8e-07
Identity = 32/69 (46.38%), Postives = 42/69 (60.87%), Query Frame = 0

Query: 1  MEKSSTKLTCMLLMFFIASGTLFVSEGRNVVNVPCNTINDCSDPIKCDCNFHLCFCHAKS 60
          MEKSS KL  ++++  IAS   F  + RNVV +PC T NDC D  KCDC  + C C  + 
Sbjct: 1  MEKSSLKLALIVVLLLIASSFQFRVDARNVVVIPCETYNDCRDSAKCDCVHNHCRCPGE- 60

Query: 61 EKKFFDKVV 70
          E+ FF K +
Sbjct: 61 EQDFFTKAI 68

BLAST of HG10001757 vs. ExPASy TrEMBL
Match: A0A061GY75 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_039540 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.3e-07
Identity = 29/57 (50.88%), Postives = 36/57 (63.16%), Query Frame = 0

Query: 1  MEKSSTKLTCMLLMFFIASGTLFVSEGRNVVNVPCNTINDCSDPIKCDCNFHLCFCH 58
          MEK S KL  +  +   A G     E RN +N PCNT+ DC+DPIKC+C  +LCFCH
Sbjct: 1  MEKFSFKLIFLAALLVFALGLQVGVEARN-INTPCNTVKDCADPIKCECRINLCFCH 56

BLAST of HG10001757 vs. ExPASy TrEMBL
Match: A0A061GRN9 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_039538 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.1e-07
Identity = 28/57 (49.12%), Postives = 36/57 (63.16%), Query Frame = 0

Query: 1  MEKSSTKLTCMLLMFFIASGTLFVSEGRNVVNVPCNTINDCSDPIKCDCNFHLCFCH 58
          M+K S KL  +  +   A G     E RN +N PCNT+ DC+DPIKC+C  +LCFCH
Sbjct: 1  MDKFSFKLIFLATLLVFALGLQVGVEARN-INTPCNTVKDCADPIKCECRMNLCFCH 56

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8651915.14.4e-1359.15hypothetical protein Csa_006059 [Cucumis sativus][more]
KGN61957.18.4e-1254.93hypothetical protein Csa_006779 [Cucumis sativus][more]
EOY32074.14.7e-0750.88Uncharacterized protein TCM_039540 [Theobroma cacao][more]
EOY32073.11.1e-0649.12Uncharacterized protein TCM_039538 [Theobroma cacao][more]
EXB53848.11.5e-0548.48hypothetical protein L484_006768 [Morus notabilis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LJR05.6e-1460.56Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G285280 PE=4 SV=1[more]
A0A0A0LMG34.0e-1254.93Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G276990 PE=4 SV=1[more]
A0A2N9FRQ01.8e-0746.38Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17804 PE=4 SV=1[more]
A0A061GY752.3e-0750.88Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_039540 PE=4 SV=1[more]
A0A061GRN95.1e-0749.12Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_039538 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10001757.1HG10001757.1mRNA