HG10001662 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10001662
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	protodermal factor 1-like
Location	Chr09: 19234091 .. 19234978 (+)
RNA-Seq Expression	HG10001662
Synteny	HG10001662

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAGCAAACAAGCTTCTGCTCTTCTTTTCACTTTGCTTGCTGGGCTGCTTTCTCAAAGCCTGCTCATCCCTGTATTCTCCACCTCCATTGTTGACCAGAAAAGCTATTACTCTCCTCCAGACCCACATGCTGGAACTCCCCCAACAGGTTACACATTCACAATGAATCTCACACATTTAGTATCAGCATAGTAGTAATAGTACTATAGTAGTGACTAGTAGGCTTACAACATTCTACTTATTTTGCATTGCAGGTTCACATAGCAGCCCTACCCCACCATCACATGGTTATGGAGGAACGCCGCCGCATTACTCCACACCAACTCCTTCCACACCGTCAAACCCTCCGTCTGGTGGTGGTGGATACTACAACCCTCCATCTTCCGGTGGCGGTAGCCCACCAACCACCCCTGTAGATCCAGGCACTCCAACTACTCCAAGCACACCAAGCACTCCCACTACTCCTTTCACCTGCAAGTAAGTCTCAGACTCACAGTAACTGTTTTCCATGGGGAAAAGATCATCTTTGTTTCTAAAAATGTGTTTGTTTGCAGTTATTGGCTGAATCATCCAGGAATGATATGGGGAGTATTGGGATGGTGGGGAACATTGGGAAATGCCTTTGGAGCAACCAATGTCCCAGGGTTTGGAACAAATCTCAACTTGCTCCAAGCACTTTCAAACACAAGGACTGATGGGTTTGGGGCCCTTTTAAGGGAAGGCACTGCTTCATACCTCAACTCTCTTGCCAGTAACAGATTCCCCTTCACAACCAAGCAAGTTAGGACGAGTTTCGTCTCGGCACTCAGCTCCAACAGAGCAGCAGCTGATCAGGCCAACACCTTCAAGTTAGCCAACGAGGGGAAAATTAAACCCAGAGCCTGA

mRNA sequence

ATGAGAAGCAAACAAGCTTCTGCTCTTCTTTTCACTTTGCTTGCTGGGCTGCTTTCTCAAAGCCTGCTCATCCCTGTATTCTCCACCTCCATTGTTGACCAGAAAAGCTATTACTCTCCTCCAGACCCACATGCTGGAACTCCCCCAACAGGTTCACATAGCAGCCCTACCCCACCATCACATGGTTATGGAGGAACGCCGCCGCATTACTCCACACCAACTCCTTCCACACCGTCAAACCCTCCGTCTGGTGGTGGTGGATACTACAACCCTCCATCTTCCGGTGGCGGTAGCCCACCAACCACCCCTGTAGATCCAGGCACTCCAACTACTCCAAGCACACCAAGCACTCCCACTACTCCTTTCACCTGCAATTATTGGCTGAATCATCCAGGAATGATATGGGGAGTATTGGGATGGTGGGGAACATTGGGAAATGCCTTTGGAGCAACCAATGTCCCAGGGTTTGGAACAAATCTCAACTTGCTCCAAGCACTTTCAAACACAAGGACTGATGGGTTTGGGGCCCTTTTAAGGGAAGGCACTGCTTCATACCTCAACTCTCTTGCCAGTAACAGATTCCCCTTCACAACCAAGCAAGTTAGGACGAGTTTCGTCTCGGCACTCAGCTCCAACAGAGCAGCAGCTGATCAGGCCAACACCTTCAAGTTAGCCAACGAGGGGAAAATTAAACCCAGAGCCTGA

Coding sequence (CDS)

ATGAGAAGCAAACAAGCTTCTGCTCTTCTTTTCACTTTGCTTGCTGGGCTGCTTTCTCAAAGCCTGCTCATCCCTGTATTCTCCACCTCCATTGTTGACCAGAAAAGCTATTACTCTCCTCCAGACCCACATGCTGGAACTCCCCCAACAGGTTCACATAGCAGCCCTACCCCACCATCACATGGTTATGGAGGAACGCCGCCGCATTACTCCACACCAACTCCTTCCACACCGTCAAACCCTCCGTCTGGTGGTGGTGGATACTACAACCCTCCATCTTCCGGTGGCGGTAGCCCACCAACCACCCCTGTAGATCCAGGCACTCCAACTACTCCAAGCACACCAAGCACTCCCACTACTCCTTTCACCTGCAATTATTGGCTGAATCATCCAGGAATGATATGGGGAGTATTGGGATGGTGGGGAACATTGGGAAATGCCTTTGGAGCAACCAATGTCCCAGGGTTTGGAACAAATCTCAACTTGCTCCAAGCACTTTCAAACACAAGGACTGATGGGTTTGGGGCCCTTTTAAGGGAAGGCACTGCTTCATACCTCAACTCTCTTGCCAGTAACAGATTCCCCTTCACAACCAAGCAAGTTAGGACGAGTTTCGTCTCGGCACTCAGCTCCAACAGAGCAGCAGCTGATCAGGCCAACACCTTCAAGTTAGCCAACGAGGGGAAAATTAAACCCAGAGCCTGA

Protein sequence

MRSKQASALLFTLLAGLLSQSLLIPVFSTSIVDQKSYYSPPDPHAGTPPTGSHSSPTPPSHGYGGTPPHYSTPTPSTPSNPPSGGGGYYNPPSSGGGSPPTTPVDPGTPTTPSTPSTPTTPFTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRTDGFGALLREGTASYLNSLASNRFPFTTKQVRTSFVSALSSNRAAADQANTFKLANEGKIKPRA

Homology

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BLAST of HG10001662 vs. NCBI nr
Match: XP_038900371.1 (protodermal factor 1-like [Benincasa hispida])

HSP 1 Score: 422.2 bits (1084), Expect = 3.0e-114
Identity = 223/244 (91.39%), Postives = 228/244 (93.44%), Query Frame = 0


Query: 1   MRSKQASALLFTLLAGLLSQSLLIPVFSTSIVDQKSYYSPP-DPHAGTPPTGSHSSPTPP 60
           MR+KQAS LLFTLLAGLLSQSLLIPVFSTSI DQKSYYSPP DPH+GTPPTGSHSSP PP
Sbjct: 1   MRTKQASVLLFTLLAGLLSQSLLIPVFSTSIADQKSYYSPPSDPHSGTPPTGSHSSPIPP 60

Query: 61  SHGYGGTPPHYSTPTPSTPSNPPSGGGGYYNPPSSGGGSPPTTPVDPGT---------PT 120
           SHGYGG+PPHYSTPTPSTPS PPS GGGYYNPPSSGGGSPPTTPVDPGT         P+
Sbjct: 61  SHGYGGSPPHYSTPTPSTPSKPPSSGGGYYNPPSSGGGSPPTTPVDPGTPSTPSTPGVPS 120

Query: 121 TPSTPSTPTTPFTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTR 180
           TPSTPS PTTPFTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTR
Sbjct: 121 TPSTPSIPTTPFTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTR 180

Query: 181 TDGFGALLREGTASYLNSLASNRFPFTTKQVRTSFVSALSSNRAAADQANTFKLANEGKI 235
           TDGFGALLREGTASYLNSLASNRFPFTTKQVRTSFVSALSSN+AAADQANTFKLANEGKI
Sbjct: 181 TDGFGALLREGTASYLNSLASNRFPFTTKQVRTSFVSALSSNKAAADQANTFKLANEGKI 240

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BLAST of HG10001662 vs. NCBI nr
Match: XP_004143175.1 (protodermal factor 1 [Cucumis sativus] >KGN47037.1 hypothetical protein Csa_020699 [Cucumis sativus])

HSP 1 Score: 397.5 bits (1020), Expect = 7.9e-107
Identity = 211/243 (86.83%), Postives = 223/243 (91.77%), Query Frame = 0


Query: 1   MRSKQASALLFTLLAGLLSQSLLIPVFSTSIVDQKSYYSPPDPHAGTPPTGSHSSPTPPS 60
           MRSKQ SAL+FTLLAGLLSQSLLIPV STSI DQKSYYSPPDPH+G+PP+GSHSSP PPS
Sbjct: 1   MRSKQVSALVFTLLAGLLSQSLLIPVLSTSIADQKSYYSPPDPHSGSPPSGSHSSPMPPS 60

Query: 61  HGYGGTPPHYSTPTPSTPSNPPSGGGGYYNPPSSGGGSPPTTPVDPGTPTTPSTPSTPTT 120
           HG GGT PHYSTPTPSTPSNPPSGGGGYYNPPSS GGSPP+TPVDPGTP+TPSTPS P+T
Sbjct: 61  HGSGGT-PHYSTPTPSTPSNPPSGGGGYYNPPSS-GGSPPSTPVDPGTPSTPSTPSVPST 120

Query: 121 ---------PFTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRT 180
                    PFTC YWLNHPG+IWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTR 
Sbjct: 121 PTTPTIPTIPFTCTYWLNHPGLIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRN 180

Query: 181 DGFGALLREGTASYLNSLASNRFPFTTKQVRTSFVSALSSNRAAADQANTFKLANEGKIK 235
           DG+GALLREGTASYLNSLASNRFP+TTKQVRTSFVSALSSN+AA +QANTFKLANEGKIK
Sbjct: 181 DGYGALLREGTASYLNSLASNRFPYTTKQVRTSFVSALSSNKAAGNQANTFKLANEGKIK 240

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BLAST of HG10001662 vs. NCBI nr
Match: XP_022947015.1 (protodermal factor 1-like [Cucurbita moschata])

HSP 1 Score: 391.7 bits (1005), Expect = 4.3e-105
Identity = 209/249 (83.94%), Postives = 218/249 (87.55%), Query Frame = 0


Query: 1   MRSKQASALLFTLLAGLLSQSLLIPVFSTSIVDQKSYYSPPDPHAGTPPTGSHSSPTPPS 60
           MR+KQAS LLFTLLAGLLSQSLLIPV ST+I DQKSYYSPPDPHAGTPPTGSHS+P PPS
Sbjct: 1   MRTKQASPLLFTLLAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPS 60

Query: 61  HGYGGTPPHYSTPTPSTPSNPPSGGGGYYNPPSSGGGSPPTTPVDPGTPTTPSTPS---- 120
           HGYGGTPPHYSTPTPSTP+  PSGG GYYNPPS  GGS PTTPVDPGTP+TPSTPS    
Sbjct: 61  HGYGGTPPHYSTPTPSTPTKSPSGGSGYYNPPS--GGSTPTTPVDPGTPSTPSTPSTPST 120

Query: 121 --------------TPTTPFTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNL 180
                         TPTTPFTCN+WLNHPGMIWGVLGWWGTLGN FGATNVPGFGTNLNL
Sbjct: 121 PSTPSTPSTPSTPGTPTTPFTCNFWLNHPGMIWGVLGWWGTLGNCFGATNVPGFGTNLNL 180

Query: 181 LQALSNTRTDGFGALLREGTASYLNSLASNRFPFTTKQVRTSFVSALSSNRAAADQANTF 232
           LQALSNTR DGFGALLREGTASYLNSLASNRFPFTTKQV++SFVSAL+SNRAAADQAN F
Sbjct: 181 LQALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALNSNRAAADQANIF 240

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BLAST of HG10001662 vs. NCBI nr
Match: XP_022149747.1 (protodermal factor 1-like [Momordica charantia])

HSP 1 Score: 391.3 bits (1004), Expect = 5.7e-105
Identity = 206/236 (87.29%), Postives = 218/236 (92.37%), Query Frame = 0


Query: 1   MRSKQASALLFTLLAGLLSQSLLIPVFSTSIVDQKSYYSPPDPHAGTPPTGSHSSPTPPS 60
           MRSKQASALLFTLLAGLLS SL+IPVFS++I DQKSYYS PDPHAGTPPTG+H++P PP 
Sbjct: 1   MRSKQASALLFTLLAGLLSHSLVIPVFSSTIADQKSYYS-PDPHAGTPPTGTHNNPMPPP 60

Query: 61  HGYGGTPPHYSTPTPSTPSNPPSGGGGYYNPPSSGGGSPPTTPVDPGTPTTPSTPSTPTT 120
           HGYGGTPPH  TPTPSTP NPPSGGGGYYNPPSSGGGSPPTTPVDPGTP+ PSTP  P  
Sbjct: 61  HGYGGTPPHQPTPTPSTPLNPPSGGGGYYNPPSSGGGSPPTTPVDPGTPSIPSTP--PPA 120

Query: 121 PF--TCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRTDGFGALL 180
           PF  TCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRTDGFGA+L
Sbjct: 121 PFTGTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRTDGFGAIL 180

Query: 181 REGTASYLNSLASNRFPFTTKQVRTSFVSALSSNRAAADQANTFKLANEGKIKPRA 235
           REGTASYLNSLA+N FPFTTKQVR+SFVSALSSN+AAADQA  FKLANEGK+KPRA
Sbjct: 181 REGTASYLNSLANNSFPFTTKQVRSSFVSALSSNKAAADQAKVFKLANEGKLKPRA 233

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BLAST of HG10001662 vs. NCBI nr
Match: XP_008456355.1 (PREDICTED: protodermal factor 1-like [Cucumis melo] >KAA0054578.1 protodermal factor 1-like [Cucumis melo var. makuwa] >TYK27542.1 protodermal factor 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 391.3 bits (1004), Expect = 5.7e-105
Identity = 211/243 (86.83%), Postives = 220/243 (90.53%), Query Frame = 0


Query: 1   MRSKQASALLFTLLAGLLSQSLLIPVFSTSIVDQKSYYSPPDPHAGTPPTGSHSSPTPPS 60
           MRSKQASALLFTLLAGLLSQSLLIPV STSI DQKSYYSPPDPH+G+PP+GSH SP PPS
Sbjct: 1   MRSKQASALLFTLLAGLLSQSLLIPVLSTSITDQKSYYSPPDPHSGSPPSGSHGSPIPPS 60

Query: 61  HGYGGTPPHYSTPTPSTPSNPPSGGGGYYNPPSSGGGSPPTTPVDPGTPTTPSTPST--- 120
           HG GGT PHYSTPTPST    PSGGGGYYNPPSS GGSPP+TPVDPGTP+TPSTPS    
Sbjct: 61  HGNGGT-PHYSTPTPST----PSGGGGYYNPPSS-GGSPPSTPVDPGTPSTPSTPSVPST 120

Query: 121 ------PTTPFTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRT 180
                 PTTPFTCNYWLNHPG+IWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTR 
Sbjct: 121 PSTPTIPTTPFTCNYWLNHPGLIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRN 180

Query: 181 DGFGALLREGTASYLNSLASNRFPFTTKQVRTSFVSALSSNRAAADQANTFKLANEGKIK 235
           DG+GALLREGTASYLNSLASNRFP+TTKQVRTSFVSALSSN+AA DQANTFKLANEGKIK
Sbjct: 181 DGYGALLREGTASYLNSLASNRFPYTTKQVRTSFVSALSSNKAAGDQANTFKLANEGKIK 237

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BLAST of HG10001662 vs. ExPASy Swiss-Prot
Match: Q9S728 (Protodermal factor 1 OS=Arabidopsis thaliana OX=3702 GN=PDF1 PE=2 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.1e-47
Identity = 136/302 (45.03%), Postives = 168/302 (55.63%), Query Frame = 0


Query: 7   SALLFTLLAGLLSQSLLIPVFSTSIVDQKSYY-SPPDPHAGTPPT--------------- 66
           S  ++ L A LLSQ L   V S    D K+YY SPP    GTPP+               
Sbjct: 6   SFAVWALFAALLSQQLFASVASVRFEDAKTYYLSPPSGSHGTPPSHTPPSSNCGSPPYDP 65

Query: 67  --GSHSSPTPPSH---------------------------------GYGGTPPHYSTPTP 126
              + S P+PPSH                                  +  TP H STP+ 
Sbjct: 66  SPSTPSHPSPPSHTPTPSTPSHTPTPHTPSHTPTPHTPPCNCGSPPSHPSTPSHPSTPSH 125

Query: 127 STPSNPPSGGGGYYN-----------PPSS--------GGGSPPTTPVDPGTPTTPSTPS 186
            TPS+PPS  GGYY+           PPS          GGSPPT  +DPGTP TP  P+
Sbjct: 126 PTPSHPPS--GGYYSSPPPRTPVVVTPPSPIVDPGTPIIGGSPPTPIIDPGTPGTPFIPA 185

Query: 187 T-PTTPFTCNYWLNHPGMIWGVLGWWGTLGNAFGA----TNVPGFGTNLNLLQALSNTRT 234
             P    TC+YW NHP +IWG+LGWWGT+G AFG     +++PGF  ++NLLQALSNTR+
Sbjct: 186 PFPPITGTCDYWRNHPTLIWGLLGWWGTVGGAFGTVSIPSSIPGFDPHMNLLQALSNTRS 245

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BLAST of HG10001662 vs. ExPASy TrEMBL
Match: A0A0A0KF76 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G178950 PE=4 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 3.8e-107
Identity = 211/243 (86.83%), Postives = 223/243 (91.77%), Query Frame = 0


Query: 1   MRSKQASALLFTLLAGLLSQSLLIPVFSTSIVDQKSYYSPPDPHAGTPPTGSHSSPTPPS 60
           MRSKQ SAL+FTLLAGLLSQSLLIPV STSI DQKSYYSPPDPH+G+PP+GSHSSP PPS
Sbjct: 1   MRSKQVSALVFTLLAGLLSQSLLIPVLSTSIADQKSYYSPPDPHSGSPPSGSHSSPMPPS 60

Query: 61  HGYGGTPPHYSTPTPSTPSNPPSGGGGYYNPPSSGGGSPPTTPVDPGTPTTPSTPSTPTT 120
           HG GGT PHYSTPTPSTPSNPPSGGGGYYNPPSS GGSPP+TPVDPGTP+TPSTPS P+T
Sbjct: 61  HGSGGT-PHYSTPTPSTPSNPPSGGGGYYNPPSS-GGSPPSTPVDPGTPSTPSTPSVPST 120

Query: 121 ---------PFTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRT 180
                    PFTC YWLNHPG+IWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTR 
Sbjct: 121 PTTPTIPTIPFTCTYWLNHPGLIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRN 180

Query: 181 DGFGALLREGTASYLNSLASNRFPFTTKQVRTSFVSALSSNRAAADQANTFKLANEGKIK 235
           DG+GALLREGTASYLNSLASNRFP+TTKQVRTSFVSALSSN+AA +QANTFKLANEGKIK
Sbjct: 181 DGYGALLREGTASYLNSLASNRFPYTTKQVRTSFVSALSSNKAAGNQANTFKLANEGKIK 240

[Close]

BLAST of HG10001662 vs. ExPASy TrEMBL
Match: A0A6J1G5M6 (protodermal factor 1-like OS=Cucurbita moschata OX=3662 GN=LOC111451018 PE=4 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 2.1e-105
Identity = 209/249 (83.94%), Postives = 218/249 (87.55%), Query Frame = 0


Query: 1   MRSKQASALLFTLLAGLLSQSLLIPVFSTSIVDQKSYYSPPDPHAGTPPTGSHSSPTPPS 60
           MR+KQAS LLFTLLAGLLSQSLLIPV ST+I DQKSYYSPPDPHAGTPPTGSHS+P PPS
Sbjct: 1   MRTKQASPLLFTLLAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPS 60

Query: 61  HGYGGTPPHYSTPTPSTPSNPPSGGGGYYNPPSSGGGSPPTTPVDPGTPTTPSTPS---- 120
           HGYGGTPPHYSTPTPSTP+  PSGG GYYNPPS  GGS PTTPVDPGTP+TPSTPS    
Sbjct: 61  HGYGGTPPHYSTPTPSTPTKSPSGGSGYYNPPS--GGSTPTTPVDPGTPSTPSTPSTPST 120

Query: 121 --------------TPTTPFTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNL 180
                         TPTTPFTCN+WLNHPGMIWGVLGWWGTLGN FGATNVPGFGTNLNL
Sbjct: 121 PSTPSTPSTPSTPGTPTTPFTCNFWLNHPGMIWGVLGWWGTLGNCFGATNVPGFGTNLNL 180

Query: 181 LQALSNTRTDGFGALLREGTASYLNSLASNRFPFTTKQVRTSFVSALSSNRAAADQANTF 232
           LQALSNTR DGFGALLREGTASYLNSLASNRFPFTTKQV++SFVSAL+SNRAAADQAN F
Sbjct: 181 LQALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALNSNRAAADQANIF 240

[Close]

BLAST of HG10001662 vs. ExPASy TrEMBL
Match: A0A5A7UHX0 (Protodermal factor 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold22G00090 PE=4 SV=1)

HSP 1 Score: 391.3 bits (1004), Expect = 2.7e-105
Identity = 211/243 (86.83%), Postives = 220/243 (90.53%), Query Frame = 0


Query: 1   MRSKQASALLFTLLAGLLSQSLLIPVFSTSIVDQKSYYSPPDPHAGTPPTGSHSSPTPPS 60
           MRSKQASALLFTLLAGLLSQSLLIPV STSI DQKSYYSPPDPH+G+PP+GSH SP PPS
Sbjct: 1   MRSKQASALLFTLLAGLLSQSLLIPVLSTSITDQKSYYSPPDPHSGSPPSGSHGSPIPPS 60

Query: 61  HGYGGTPPHYSTPTPSTPSNPPSGGGGYYNPPSSGGGSPPTTPVDPGTPTTPSTPST--- 120
           HG GGT PHYSTPTPST    PSGGGGYYNPPSS GGSPP+TPVDPGTP+TPSTPS    
Sbjct: 61  HGNGGT-PHYSTPTPST----PSGGGGYYNPPSS-GGSPPSTPVDPGTPSTPSTPSVPST 120

Query: 121 ------PTTPFTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRT 180
                 PTTPFTCNYWLNHPG+IWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTR 
Sbjct: 121 PSTPTIPTTPFTCNYWLNHPGLIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRN 180

Query: 181 DGFGALLREGTASYLNSLASNRFPFTTKQVRTSFVSALSSNRAAADQANTFKLANEGKIK 235
           DG+GALLREGTASYLNSLASNRFP+TTKQVRTSFVSALSSN+AA DQANTFKLANEGKIK
Sbjct: 181 DGYGALLREGTASYLNSLASNRFPYTTKQVRTSFVSALSSNKAAGDQANTFKLANEGKIK 237

[Close]

BLAST of HG10001662 vs. ExPASy TrEMBL
Match: A0A6J1D8U7 (protodermal factor 1-like OS=Momordica charantia OX=3673 GN=LOC111018104 PE=4 SV=1)

HSP 1 Score: 391.3 bits (1004), Expect = 2.7e-105
Identity = 206/236 (87.29%), Postives = 218/236 (92.37%), Query Frame = 0


Query: 1   MRSKQASALLFTLLAGLLSQSLLIPVFSTSIVDQKSYYSPPDPHAGTPPTGSHSSPTPPS 60
           MRSKQASALLFTLLAGLLS SL+IPVFS++I DQKSYYS PDPHAGTPPTG+H++P PP 
Sbjct: 1   MRSKQASALLFTLLAGLLSHSLVIPVFSSTIADQKSYYS-PDPHAGTPPTGTHNNPMPPP 60

Query: 61  HGYGGTPPHYSTPTPSTPSNPPSGGGGYYNPPSSGGGSPPTTPVDPGTPTTPSTPSTPTT 120
           HGYGGTPPH  TPTPSTP NPPSGGGGYYNPPSSGGGSPPTTPVDPGTP+ PSTP  P  
Sbjct: 61  HGYGGTPPHQPTPTPSTPLNPPSGGGGYYNPPSSGGGSPPTTPVDPGTPSIPSTP--PPA 120

Query: 121 PF--TCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRTDGFGALL 180
           PF  TCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRTDGFGA+L
Sbjct: 121 PFTGTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRTDGFGAIL 180

Query: 181 REGTASYLNSLASNRFPFTTKQVRTSFVSALSSNRAAADQANTFKLANEGKIKPRA 235
           REGTASYLNSLA+N FPFTTKQVR+SFVSALSSN+AAADQA  FKLANEGK+KPRA
Sbjct: 181 REGTASYLNSLANNSFPFTTKQVRSSFVSALSSNKAAADQAKVFKLANEGKLKPRA 233

[Close]

BLAST of HG10001662 vs. ExPASy TrEMBL
Match: A0A1S3C4A9 (protodermal factor 1-like OS=Cucumis melo OX=3656 GN=LOC103496321 PE=4 SV=1)

HSP 1 Score: 391.3 bits (1004), Expect = 2.7e-105
Identity = 211/243 (86.83%), Postives = 220/243 (90.53%), Query Frame = 0


Query: 1   MRSKQASALLFTLLAGLLSQSLLIPVFSTSIVDQKSYYSPPDPHAGTPPTGSHSSPTPPS 60
           MRSKQASALLFTLLAGLLSQSLLIPV STSI DQKSYYSPPDPH+G+PP+GSH SP PPS
Sbjct: 1   MRSKQASALLFTLLAGLLSQSLLIPVLSTSITDQKSYYSPPDPHSGSPPSGSHGSPIPPS 60

Query: 61  HGYGGTPPHYSTPTPSTPSNPPSGGGGYYNPPSSGGGSPPTTPVDPGTPTTPSTPST--- 120
           HG GGT PHYSTPTPST    PSGGGGYYNPPSS GGSPP+TPVDPGTP+TPSTPS    
Sbjct: 61  HGNGGT-PHYSTPTPST----PSGGGGYYNPPSS-GGSPPSTPVDPGTPSTPSTPSVPST 120

Query: 121 ------PTTPFTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRT 180
                 PTTPFTCNYWLNHPG+IWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTR 
Sbjct: 121 PSTPTIPTTPFTCNYWLNHPGLIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRN 180

Query: 181 DGFGALLREGTASYLNSLASNRFPFTTKQVRTSFVSALSSNRAAADQANTFKLANEGKIK 235
           DG+GALLREGTASYLNSLASNRFP+TTKQVRTSFVSALSSN+AA DQANTFKLANEGKIK
Sbjct: 181 DGYGALLREGTASYLNSLASNRFPYTTKQVRTSFVSALSSNKAAGDQANTFKLANEGKIK 237

[Close]

BLAST of HG10001662 vs. TAIR 10
Match: AT2G42840.1 (protodermal factor 1 )

HSP 1 Score: 191.4 bits (485), Expect = 8.0e-49
Identity = 136/302 (45.03%), Postives = 168/302 (55.63%), Query Frame = 0


Query: 7   SALLFTLLAGLLSQSLLIPVFSTSIVDQKSYY-SPPDPHAGTPPT--------------- 66
           S  ++ L A LLSQ L   V S    D K+YY SPP    GTPP+               
Sbjct: 6   SFAVWALFAALLSQQLFASVASVRFEDAKTYYLSPPSGSHGTPPSHTPPSSNCGSPPYDP 65

Query: 67  --GSHSSPTPPSH---------------------------------GYGGTPPHYSTPTP 126
              + S P+PPSH                                  +  TP H STP+ 
Sbjct: 66  SPSTPSHPSPPSHTPTPSTPSHTPTPHTPSHTPTPHTPPCNCGSPPSHPSTPSHPSTPSH 125

Query: 127 STPSNPPSGGGGYYN-----------PPSS--------GGGSPPTTPVDPGTPTTPSTPS 186
            TPS+PPS  GGYY+           PPS          GGSPPT  +DPGTP TP  P+
Sbjct: 126 PTPSHPPS--GGYYSSPPPRTPVVVTPPSPIVDPGTPIIGGSPPTPIIDPGTPGTPFIPA 185

Query: 187 T-PTTPFTCNYWLNHPGMIWGVLGWWGTLGNAFGA----TNVPGFGTNLNLLQALSNTRT 234
             P    TC+YW NHP +IWG+LGWWGT+G AFG     +++PGF  ++NLLQALSNTR+
Sbjct: 186 PFPPITGTCDYWRNHPTLIWGLLGWWGTVGGAFGTVSIPSSIPGFDPHMNLLQALSNTRS 245

The following BLAST results are available for this feature:

BLAST of HG10001662 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900371.1	3.0e-114	91.39	protodermal factor 1-like [Benincasa hispida]	[more]
XP_004143175.1	7.9e-107	86.83	protodermal factor 1 [Cucumis sativus] >KGN47037.1 hypothetical protein Csa_0206...	[more]
XP_022947015.1	4.3e-105	83.94	protodermal factor 1-like [Cucurbita moschata]	[more]
XP_022149747.1	5.7e-105	87.29	protodermal factor 1-like [Momordica charantia]	[more]
XP_008456355.1	5.7e-105	86.83	PREDICTED: protodermal factor 1-like [Cucumis melo] >KAA0054578.1 protodermal fa...	[more]

BLAST of HG10001662 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S728	1.1e-47	45.03	Protodermal factor 1 OS=Arabidopsis thaliana OX=3702 GN=PDF1 PE=2 SV=1	[more]

BLAST of HG10001662 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KF76	3.8e-107	86.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G178950 PE=4 SV=1	[more]
A0A6J1G5M6	2.1e-105	83.94	protodermal factor 1-like OS=Cucurbita moschata OX=3662 GN=LOC111451018 PE=4 SV=...	[more]
A0A5A7UHX0	2.7e-105	86.83	Protodermal factor 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1D8U7	2.7e-105	87.29	protodermal factor 1-like OS=Momordica charantia OX=3673 GN=LOC111018104 PE=4 SV...	[more]
A0A1S3C4A9	2.7e-105	86.83	protodermal factor 1-like OS=Cucumis melo OX=3656 GN=LOC103496321 PE=4 SV=1	[more]

BLAST of HG10001662 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42840.1	8.0e-49	45.03	protodermal factor 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..116
None	No IPR available	PANTHER	PTHR33210:SF18	PROTODERMAL FACTOR 1	coord: 1..234
IPR039923	Protodermal factor 1	PANTHER	PTHR33210	PROTODERMAL FACTOR 1	coord: 1..234

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10001662.1	HG10001662.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane