HG10001655 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10001655
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr09: 19159423 .. 19159615 (-)
RNA-Seq ExpressionHG10001655
SyntenyHG10001655
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCGTTGAAGAAGATGAGCAAGGAGCTTTGGCCATGGCGGTTTTCGCTCTTCAGAAGAAAACCAATTGATTTTCAGATGATTCATTTTCTTATTGATAATGTCTTCTTCAAGATTGTTTCTGTTGTGGAAGCCATTGTTTTGGTCTCAACACTCTGTTTTTTCTTACTCTGTTGTGGGGGTCATGTCTGA

mRNA sequence

ATGGTCGTTGAAGAAGATGAGCAAGGAGCTTTGGCCATGGCGATGATTCATTTTCTTATTGATAATGTCTTCTTCAAGATTGTTTCTGTTGTGGAAGCCATTGTTTTGGTCTCAACACTCTGTTTTTTCTTACTCTGTTGTGGGGGTCATGTCTGA

Coding sequence (CDS)

ATGGTCGTTGAAGAAGATGAGCAAGGAGCTTTGGCCATGGCGATGATTCATTTTCTTATTGATAATGTCTTCTTCAAGATTGTTTCTGTTGTGGAAGCCATTGTTTTGGTCTCAACACTCTGTTTTTTCTTACTCTGTTGTGGGGGTCATGTCTGA

Protein sequence

MVVEEDEQGALAMAMIHFLIDNVFFKIVSVVEAIVLVSTLCFFLLCCGGHV
Homology
BLAST of HG10001655 vs. NCBI nr
Match: KAG7010430.1 (hypothetical protein SDJN02_27223, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 62.4 bits (150), Expect = 1.3e-06
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 0

Query: 13 MAMIHFLIDNVFFKIVSVVEAIVLVSTLCFFLLCCG 49
          + MIHF++DNVFFKIVSVVEAIVLVSTLCFF LCCG
Sbjct: 31 LRMIHFVVDNVFFKIVSVVEAIVLVSTLCFFYLCCG 66

BLAST of HG10001655 vs. ExPASy TrEMBL
Match: A0A2P6S081 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0151771 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.0e-04
Identity = 25/33 (75.76%), Postives = 30/33 (90.91%), Query Frame = 0

Query: 19 LIDNVFFKIVSVVEAIVLVSTLCFFLLCCGGHV 52
          +ID+V FKI+SVVEA+VLVSTLCFF LCCG H+
Sbjct: 60 IIDDVVFKILSVVEAVVLVSTLCFFFLCCGCHI 92

BLAST of HG10001655 vs. ExPASy TrEMBL
Match: A0A7N2R9D5 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.0e-04
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 0

Query: 19 LIDNVFFKIVSVVEAIVLVSTLCFFLLCCGGHV 52
          ++D V FKIVSVVEA+VLVSTLCFF LCCG H+
Sbjct: 36 IVDGVVFKIVSVVEAVVLVSTLCFFYLCCGCHI 68

BLAST of HG10001655 vs. ExPASy TrEMBL
Match: A0A1U7YQV9 (uncharacterized protein LOC104585959 OS=Nelumbo nucifera OX=4432 GN=LOC104585959 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 8.6e-04
Identity = 24/33 (72.73%), Postives = 29/33 (87.88%), Query Frame = 0

Query: 18 FLIDNVFFKIVSVVEAIVLVSTLCFFLLCCGGH 51
          F++D+V FKI+SV EAI+LVSTLCFF LCCG H
Sbjct: 35 FILDDVLFKIISVFEAIILVSTLCFFYLCCGCH 67

BLAST of HG10001655 vs. TAIR 10
Match: AT1G06475.1 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 46.6 bits (109), Expect = 6.9e-06
Identity = 22/37 (59.46%), Postives = 29/37 (78.38%), Query Frame = 0

Query: 15 MIHFLIDNVFFKIVSVVEAIVLVSTLCFFLLCCGGHV 52
          M+  ++D V +K++ VVEA VLVSTLCFF LCCG H+
Sbjct: 57 MLTEIVDGVVYKVMYVVEAFVLVSTLCFFYLCCGCHI 93

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7010430.11.3e-0686.11hypothetical protein SDJN02_27223, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2P6S0815.0e-0475.76Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0151771 PE=4... [more]
A0A7N2R9D55.0e-0475.76Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A1U7YQV98.6e-0472.73uncharacterized protein LOC104585959 OS=Nelumbo nucifera OX=4432 GN=LOC104585959... [more]
Match NameE-valueIdentityDescription
AT1G06475.16.9e-0659.46unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10001655.1HG10001655.1mRNA