HG10001627 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10001627
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description50S ribosomal protein L20
LocationChr09: 18830809 .. 18833087 (+)
RNA-Seq ExpressionHG10001627
SyntenyHG10001627
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAAGGACAAGATATTTAAGCTAGCCAAGGGTTTCAGAGGCAGGGCCAAGAATTGCATAAGGATTGCTAGAGAGCGGGTGGAGAAGGCTCTCCAGTATTCCTACAGGGATCGCCGTACTAAGAAGCGAGACATGCGCTCCCTTTGGATACAACGTATCAATGCTGGCACGCGCCTTCATGGGGTATGTCTATTTTATTTGAATGTTCCTCATTAGACTACCACAATTGTTTATGTGATCCAACGTGTTGTTGTACCTTTTTAGAATTACTTTATAGACTACCACAATCTTAATTTGATTTCGGTCTTCCCTTTTTCTTTTTTATTGTTTTATTTTATTTTCCTGAAAAAATATACTAAAATGGAAAAAGAAAATATAGGATGGGGGATAGGGAGTGGGATTCCAACTACTTCTTCTCTTTGTTCGATATTTTGATGATAGTGAGTAAGTTTCTCGAGAGAGTGTTGAGGAACTTCTTGTGGGGAGGGGTCAATGAGGAGAAGGGGGAGGGTTTCATTTGGTTAAGTGGGAGTTGGTGGTGAAGCCACTGGAATTAGGAGAATTAAAGATTGGGAGCCTGAGATTACGTGACGAGGTGCTATTAGCTAAGTGGTTGTGGTTGTTCTTCATGGGGCACAGTACAAAGTTATTATGAGCAAAAATGGCTCACACCCTTCTAAGTGGGTGGCAAGCATTGATTCTAAGGGACCTAGTAAAAGCCTTTGGCAATCTATTGCATATGGATTCCCTTTTTTCTCTCGGTTCATTAGATGCTTTGTTGGGGAAGATTTGAAAGTTTATTTTTGGGAAGATTGTTGAGTTTGTGACAACCTTTTTCTGAGTTGTTTCTTCATTTATACCACCCATCTCCAAAGAAGCATCATTTGGTGGCTTCAATTTTGCCTTCTCCTTTCCTGGGGCTGTGGTCATCCTCTTTCTGATTGAGTGGCTGTTGATGTGGTGGTTCTTCTTTGATTTTTCCCTTCTGCAAGACCAACGTGTGTTTTTAGGGAGAAATGATTCTAGGTTTTGGTCTTTTGATTCTTCGAAAGGCTTTTCCTGTAAATCCCTTTTCACATTCTGTCTGTCTCTTCACTCCCTTGGGCTGCCTCAGTTTTTGCTACTATTTGGAAGAGTTAAATACCAAAGAAGGCCAAAGTTTTCTTGTGTGGCAAGTTTTACATGGTAGGGTAAACACTATAGATCGTTTGCAATGGTGCATCATTTGCAGGGGGCAAGAGGACCTTCACCGCCTTCTGTGGAGTGGTGATCTAGAATAGGTGGTTGAGCTCGTTTAGTTTACATTTGGCGTGGAGAGATTGTTTCTCCATGATTGAGGGTGTGGTCTTGTTTTTTGCCTTTTTCGTGAGGAAGACAAGATGTTGTGACCTTTTTTTTTGGGTATTTGGATTGAAAGCAATCATGATTTCTAGAGAGGTGGAATGATCGAGTGATGAGATGCGGGAGGGGGTTATGTTTAATTCCTCCTTGTGGACGCTAGTTGCTGTTTTATAATTTGACCATGGTTTGATTTTGTTGTCTCTCACTTTCTTGGTTCTTTCTGATGGTTTTTTTTTGTTTGCCCTTGTATCTGTTTTTCTTTTTTCAACAAAGCTCGGTTACCTACCCCCCCCAAAAAAAAAAAAAAAAATTTGATTGACATCATTTTGAGCTTCTGATCCTTCGATATTCTCACATCAAATTTCTAATTTCCACCTTTGATATTCCCACATCCTTTAATTTTAGCTGTTTAATAAGTGCAATATGTATGTAATTTTATGCTAACTTGACCTGCCTGGATAAGTTGCATACATTTCACGTGATTCATGAATTTCAGCACTTGTTGTTTGAATGGTTTGGTTTTGCAAAGGTAGGAGTGAAAGCTGCTTTAGGTCAAATAATTACTGTATGCTTGTGTTCTAGGTGTTGGATTCTCACTTTCTACATCAGTGTGAATTGCCTCTTATTTCCAATCAATATTGAATTCTTTACCAAGTTACTCAAATATTTATCTTCTGTATATTTGGACAATTTGCCATGTAGAGATACTAACGTTTCTTTTGTCTCCTTCCCTACCATATAAGGTAAACTACGGCAATTTTATGCATGGGCTGATGAAGGAGAATGTCCAACTAAATAGAAAAGTATTATCAGAGCTCTCGATGCACGAGCCTTACAGTTTCAAGGCCCTGGTAGACATCTCTCGTAATGCATTTCCTGGAAACAAGAATGTAGTGTTTCCCCCCAAGAAGGATGCTGCTTCCATGATTGTTTAA

mRNA sequence

ATGAACAAGGACAAGATATTTAAGCTAGCCAAGGGTTTCAGAGGCAGGGCCAAGAATTGCATAAGGATTGCTAGAGAGCGGGTGGAGAAGGCTCTCCAGTATTCCTACAGGGATCGCCGTACTAAGAAGCGAGACATGCGCTCCCTTTGGATACAACGTATCAATGCTGGCACGCGCCTTCATGGGGTAAACTACGGCAATTTTATGCATGGGCTGATGAAGGAGAATGTCCAACTAAATAGAAAAGTATTATCAGAGCTCTCGATGCACGAGCCTTACAGTTTCAAGGCCCTGGTAGACATCTCTCGTAATGCATTTCCTGGAAACAAGAATGTAGTGTTTCCCCCCAAGAAGGATGCTGCTTCCATGATTGTTTAA

Coding sequence (CDS)

ATGAACAAGGACAAGATATTTAAGCTAGCCAAGGGTTTCAGAGGCAGGGCCAAGAATTGCATAAGGATTGCTAGAGAGCGGGTGGAGAAGGCTCTCCAGTATTCCTACAGGGATCGCCGTACTAAGAAGCGAGACATGCGCTCCCTTTGGATACAACGTATCAATGCTGGCACGCGCCTTCATGGGGTAAACTACGGCAATTTTATGCATGGGCTGATGAAGGAGAATGTCCAACTAAATAGAAAAGTATTATCAGAGCTCTCGATGCACGAGCCTTACAGTTTCAAGGCCCTGGTAGACATCTCTCGTAATGCATTTCCTGGAAACAAGAATGTAGTGTTTCCCCCCAAGAAGGATGCTGCTTCCATGATTGTTTAA

Protein sequence

MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDAASMIV
Homology
[Close]
BLAST of HG10001627 vs. NCBI nr
Match: XP_008456292.1 (PREDICTED: 50S ribosomal protein L20 [Cucumis melo] >XP_008456294.1 PREDICTED: 50S ribosomal protein L20 [Cucumis melo] >XP_008456295.1 PREDICTED: 50S ribosomal protein L20 [Cucumis melo] >XP_016901960.1 PREDICTED: 50S ribosomal protein L20 [Cucumis melo] >XP_016901961.1 PREDICTED: 50S ribosomal protein L20 [Cucumis melo])

HSP 1 Score: 250.0 bits (637), Expect = 1.1e-62
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 0 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRR KKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

Query: 121 ASMIV 126
           ASMIV
Sbjct: 121 ASMIV 125

[Close]
BLAST of HG10001627 vs. NCBI nr
Match: XP_004139908.1 (uncharacterized protein LOC101216644 [Cucumis sativus] >XP_031744108.1 uncharacterized protein LOC101216644 [Cucumis sativus] >XP_031744109.1 uncharacterized protein LOC101216644 [Cucumis sativus] >XP_031744110.1 uncharacterized protein LOC101216644 [Cucumis sativus] >KGN46794.1 hypothetical protein Csa_020818 [Cucumis sativus])

HSP 1 Score: 249.2 bits (635), Expect = 1.9e-62
Identity = 123/125 (98.40%), Postives = 124/125 (99.20%), Query Frame = 0 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRR KKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKENVQLNRKVLSE+SMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

Query: 121 ASMIV 126
           ASMIV
Sbjct: 121 ASMIV 125

[Close]
BLAST of HG10001627 vs. NCBI nr
Match: XP_022943497.1 (uncharacterized protein LOC111448251 [Cucurbita moschata] >XP_022943498.1 uncharacterized protein LOC111448251 [Cucurbita moschata] >XP_022943499.1 uncharacterized protein LOC111448251 [Cucurbita moschata] >KAG6570598.1 hypothetical protein SDJN03_29513, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010448.1 rplT [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 248.4 bits (633), Expect = 3.2e-62
Identity = 123/125 (98.40%), Postives = 123/125 (98.40%), Query Frame = 0 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRR KKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

Query: 121 ASMIV 126
            SMIV
Sbjct: 121 VSMIV 125

[Close]
BLAST of HG10001627 vs. NCBI nr
Match: XP_022985864.1 (uncharacterized protein LOC111483787 [Cucurbita maxima] >XP_022985865.1 uncharacterized protein LOC111483787 [Cucurbita maxima] >XP_022985866.1 uncharacterized protein LOC111483787 [Cucurbita maxima])

HSP 1 Score: 248.1 bits (632), Expect = 4.1e-62
Identity = 122/125 (97.60%), Postives = 123/125 (98.40%), Query Frame = 0 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRR KKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

Query: 121 ASMIV 126
            SM+V
Sbjct: 121 VSMVV 125

[Close]
BLAST of HG10001627 vs. NCBI nr
Match: XP_038901625.1 (50S ribosomal protein L20 [Benincasa hispida] >XP_038901626.1 50S ribosomal protein L20 [Benincasa hispida])

HSP 1 Score: 247.3 bits (630), Expect = 7.1e-62
Identity = 122/125 (97.60%), Postives = 123/125 (98.40%), Query Frame = 0 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKG+RGRAKNCIRIARERVEK LQYSYRDRR KKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGYRGRAKNCIRIARERVEKGLQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

Query: 121 ASMIV 126
           ASMIV
Sbjct: 121 ASMIV 125

[Close]
BLAST of HG10001627 vs. ExPASy Swiss-Prot
Match: B6IPJ8 (50S ribosomal protein L20 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=rplT PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 3.9e-31
Identity = 63/101 (62.38%), Postives = 81/101 (80.20%), Query Frame = 0 

Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRLHGVN 64
           K+ KLAKG+RGR+  C RIA ERVEKAL+Y+YRDRR +KRD R LWIQRINAG RLHG+ 
Sbjct: 16  KVLKLAKGYRGRSSKCYRIALERVEKALRYAYRDRRNRKRDFRGLWIQRINAGARLHGLT 75

Query: 65  YGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNA 106
           Y  FMHGL +  ++++RKVLS+++  EP SFKALV+ ++ A
Sbjct: 76  YSKFMHGLKRAGIEVDRKVLSDIAAREPESFKALVEQAQKA 116

[Close]
BLAST of HG10001627 vs. ExPASy Swiss-Prot
Match: Q3YSX0 (50S ribosomal protein L20 OS=Ehrlichia canis (strain Jake) OX=269484 GN=rplT PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.1e-28
Identity = 60/101 (59.41%), Postives = 80/101 (79.21%), Query Frame = 0 

Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRLHGVN 64
           K+ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRR +KR  RSLWI RINA  R HG+ 
Sbjct: 16  KVIKLAKGYRGRSKNCYRIALQRVEKALQYAYRDRRNRKRFFRSLWIMRINAAARQHGLL 75

Query: 65  YGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNA 106
           Y +F+HGL   N+ LNRKVL++++++   +FK +VDI++ A
Sbjct: 76  YSDFIHGLSLANITLNRKVLADMAVNNQDNFKQIVDITKEA 116

[Close]
BLAST of HG10001627 vs. ExPASy Swiss-Prot
Match: Q73GR7 (50S ribosomal protein L20 OS=Wolbachia pipientis wMel OX=163164 GN=rplT PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.1e-28
Identity = 61/96 (63.54%), Postives = 75/96 (78.12%), Query Frame = 0 

Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRLHGVN 64
           KI KLAKG+RGRAK+C RIA +RVEKALQY+YRDRRT+KRD RSLWI RINA  R HG+ 
Sbjct: 16  KILKLAKGYRGRAKSCYRIALQRVEKALQYAYRDRRTRKRDFRSLWIIRINAAAREHGLT 75

Query: 65  YGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD 101
           YG FMHGL    + LNRK+L+E++++    F  LV+
Sbjct: 76  YGRFMHGLTLAGIDLNRKILAEMAVNYKDDFAKLVE 111

[Close]
BLAST of HG10001627 vs. ExPASy Swiss-Prot
Match: C0R3S6 (50S ribosomal protein L20 OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) OX=66084 GN=rplT PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.1e-28
Identity = 61/96 (63.54%), Postives = 75/96 (78.12%), Query Frame = 0 

Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRLHGVN 64
           KI KLAKG+RGRAK+C RIA +RVEKALQY+YRDRRT+KRD RSLWI RINA  R HG+ 
Sbjct: 16  KILKLAKGYRGRAKSCYRIALQRVEKALQYAYRDRRTRKRDFRSLWIIRINAAAREHGLT 75

Query: 65  YGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD 101
           YG FMHGL    + LNRK+L+E++++    F  LV+
Sbjct: 76  YGRFMHGLTLAGIDLNRKILAEMAVNYKDDFAKLVE 111

[Close]
BLAST of HG10001627 vs. ExPASy Swiss-Prot
Match: Q2GHR2 (50S ribosomal protein L20 OS=Ehrlichia chaffeensis (strain ATCC CRL-10679 / Arkansas) OX=205920 GN=rplT PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 5.3e-28
Identity = 60/101 (59.41%), Postives = 78/101 (77.23%), Query Frame = 0 

Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRLHGVN 64
           K+ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRR +KR  RSLWI RINA  R HG+ 
Sbjct: 16  KVIKLAKGYRGRSKNCYRIALQRVEKALQYAYRDRRNRKRFFRSLWIMRINAAVRQHGLL 75

Query: 65  YGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNA 106
           Y +F+HGL   NV LNRKVL++++++    FK +VD+ + A
Sbjct: 76  YSDFIHGLSLANVTLNRKVLADMAVNHKDHFKQIVDLIKEA 116

[Close]
BLAST of HG10001627 vs. ExPASy TrEMBL
Match: A0A1S4E159 (50S ribosomal protein L20 OS=Cucumis melo OX=3656 GN=LOC103496283 PE=3 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 5.3e-63
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 0 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRR KKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

Query: 121 ASMIV 126
           ASMIV
Sbjct: 121 ASMIV 125

[Close]
BLAST of HG10001627 vs. ExPASy TrEMBL
Match: A0A0A0KD68 (50S ribosomal protein L20 OS=Cucumis sativus OX=3659 GN=Csa_6G135990 PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 9.0e-63
Identity = 123/125 (98.40%), Postives = 124/125 (99.20%), Query Frame = 0 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRR KKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKENVQLNRKVLSE+SMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

Query: 121 ASMIV 126
           ASMIV
Sbjct: 121 ASMIV 125

[Close]
BLAST of HG10001627 vs. ExPASy TrEMBL
Match: A0A6J1FUI3 (50S ribosomal protein L20 OS=Cucurbita moschata OX=3662 GN=LOC111448251 PE=3 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.5e-62
Identity = 123/125 (98.40%), Postives = 123/125 (98.40%), Query Frame = 0 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRR KKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

Query: 121 ASMIV 126
            SMIV
Sbjct: 121 VSMIV 125

[Close]
BLAST of HG10001627 vs. ExPASy TrEMBL
Match: A0A6J1JCG1 (50S ribosomal protein L20 OS=Cucurbita maxima OX=3661 GN=LOC111483787 PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.0e-62
Identity = 122/125 (97.60%), Postives = 123/125 (98.40%), Query Frame = 0 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRR KKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

Query: 121 ASMIV 126
            SM+V
Sbjct: 121 VSMVV 125

[Close]
BLAST of HG10001627 vs. ExPASy TrEMBL
Match: A0A6J1KY75 (50S ribosomal protein L20 OS=Cucurbita maxima OX=3661 GN=LOC111499805 PE=3 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.4e-60
Identity = 117/125 (93.60%), Postives = 122/125 (97.60%), Query Frame = 0 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRR KKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKEN+QLNRKVLSELSMHEPYSFK+LVDISRNAFPGNKNVVFPPKKD 
Sbjct: 61  HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNKNVVFPPKKDG 120

Query: 121 ASMIV 126
            S+++
Sbjct: 121 ISVVL 125

[Close]
BLAST of HG10001627 vs. TAIR 10
Match: AT1G16740.1 (Ribosomal protein L20 )

HSP 1 Score: 209.5 bits (532), Expect = 1.5e-54
Identity = 103/124 (83.06%), Postives = 112/124 (90.32%), Query Frame = 0 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRL 60
           MNK +IFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRR KKR+MR LWI+RINAG+R 
Sbjct: 1   MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKREMRGLWIERINAGSRQ 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNF+HGLMKEN+QLNRKVLSELSMHEPYSFKALVD+SR +FPGNKNVV   +K  
Sbjct: 61  HGVNYGNFIHGLMKENIQLNRKVLSELSMHEPYSFKALVDVSRKSFPGNKNVVQASRKVD 120

Query: 121 ASMI 125
            S I
Sbjct: 121 ISSI 124

[Close]
BLAST of HG10001627 vs. TAIR 10
Match: ATCG00660.1 (ribosomal protein L20 )

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-09
Identity = 34/89 (38.20%), Postives = 52/89 (58.43%), Query Frame = 0 

Query: 3   KDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRLHG 62
           + K+   A  FRG      R   ++  +AL  ++RDR  +KRD R LWI RINA     G
Sbjct: 14  RTKLRLFASSFRGAHSRLTRTMTQQRIRALVSAHRDRGKRKRDFRRLWITRINAVIHEMG 73

Query: 63  V--NYGNFMHGLMKENVQLNRKVLSELSM 90
           V  +Y  F+H L K+ + LNRK+L+++++
Sbjct: 74  VFYSYNEFIHNLYKKQLLLNRKILAQIAL 102

The following BLAST results are available for this feature:
BLAST of HG10001627 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008456292.11.1e-6299.20PREDICTED: 50S ribosomal protein L20 [Cucumis melo] >XP_008456294.1 PREDICTED: 5... [more]
XP_004139908.11.9e-6298.40uncharacterized protein LOC101216644 [Cucumis sativus] >XP_031744108.1 uncharact... [more]
XP_022943497.13.2e-6298.40uncharacterized protein LOC111448251 [Cucurbita moschata] >XP_022943498.1 unchar... [more]
XP_022985864.14.1e-6297.60uncharacterized protein LOC111483787 [Cucurbita maxima] >XP_022985865.1 uncharac... [more]
XP_038901625.17.1e-6297.6050S ribosomal protein L20 [Benincasa hispida] >XP_038901626.1 50S ribosomal prot... [more]
BLAST of HG10001627 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
B6IPJ83.9e-3162.3850S ribosomal protein L20 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX... [more]
Q3YSX01.1e-2859.4150S ribosomal protein L20 OS=Ehrlichia canis (strain Jake) OX=269484 GN=rplT PE=... [more]
Q73GR73.1e-2863.5450S ribosomal protein L20 OS=Wolbachia pipientis wMel OX=163164 GN=rplT PE=3 SV=... [more]
C0R3S63.1e-2863.5450S ribosomal protein L20 OS=Wolbachia sp. subsp. Drosophila simulans (strain wR... [more]
Q2GHR25.3e-2859.4150S ribosomal protein L20 OS=Ehrlichia chaffeensis (strain ATCC CRL-10679 / Arka... [more]
BLAST of HG10001627 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S4E1595.3e-6399.2050S ribosomal protein L20 OS=Cucumis melo OX=3656 GN=LOC103496283 PE=3 SV=1[more]
A0A0A0KD689.0e-6398.4050S ribosomal protein L20 OS=Cucumis sativus OX=3659 GN=Csa_6G135990 PE=3 SV=1[more]
A0A6J1FUI31.5e-6298.4050S ribosomal protein L20 OS=Cucurbita moschata OX=3662 GN=LOC111448251 PE=3 SV=... [more]
A0A6J1JCG12.0e-6297.6050S ribosomal protein L20 OS=Cucurbita maxima OX=3661 GN=LOC111483787 PE=3 SV=1[more]
A0A6J1KY751.4e-6093.6050S ribosomal protein L20 OS=Cucurbita maxima OX=3661 GN=LOC111499805 PE=3 SV=1[more]
BLAST of HG10001627 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G16740.11.5e-5483.06Ribosomal protein L20 [more]
ATCG00660.11.1e-0938.20ribosomal protein L20 [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005813Ribosomal protein L20PRINTSPR00062RIBOSOMALL20coord: 31..60
score: 57.88
coord: 1..30
score: 33.03
coord: 64..90
score: 38.27
IPR005813Ribosomal protein L20TIGRFAMTIGR01032TIGR01032coord: 3..102
e-value: 1.7E-38
score: 129.3
IPR005813Ribosomal protein L20PFAMPF00453Ribosomal_L20coord: 3..98
e-value: 3.4E-41
score: 139.7
IPR005813Ribosomal protein L20PANTHERPTHR1098639S RIBOSOMAL PROTEIN L20coord: 1..113
IPR005813Ribosomal protein L20PROSITEPS00937RIBOSOMAL_L20coord: 43..59
IPR005813Ribosomal protein L20HAMAPMF_00382Ribosomal_L20coord: 1..104
score: 22.16861
IPR005813Ribosomal protein L20CDDcd07026Ribosomal_L20coord: 5..100
e-value: 2.25476E-49
score: 151.098
IPR035566Ribosomal protein L20, C-terminalGENE3D1.10.1900.20Ribosomal protein L20coord: 45..106
e-value: 1.9E-26
score: 93.5
IPR035566Ribosomal protein L20, C-terminalSUPERFAMILY74731Ribosomal protein L20coord: 2..105
NoneNo IPR availableGENE3D6.10.160.10coord: 1..44
e-value: 9.8E-20
score: 72.4
NoneNo IPR availablePANTHERPTHR10986:SF2450S RIBOSOMAL PROTEIN L20coord: 1..113

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10001627.1HG10001627.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000027 ribosomal large subunit assembly
biological_process GO:0006412 translation
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome