HG10001570 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTAACAGTTTAAGATGCTGTTTAGCTTGTGTTCTTCCTTGTGGAGCTCTTGATTTGATCCGAATCGTTCATTTGAACGGCCACGTCGAAGAAATTGCCCATCCGATCACCGCCGGCGACGTCCTAAAAGCCAACCCAAATCACGTTCTTAGTAAGCCTTCTTCACAAGGGGTTGTTCGCCGGATTCTGATCCTCTCGCCGGAATCGGAGCTCAAAAGGGGAAGTATTTATTTCTTGATTCCGGCGACTTCTCTGCCGGAGAAGAAAAGAAACGCCGGAGCCAGCCTTAAAACTCCGTCAAGAAAAGTCAAACAATGCACCGTCTCCGCCGTGGCCGCCGCCGCAGACGTTGATTCTTACCTTTCCGATGTTGTCTCCGACAAGAAACCGTCGCGGCGGGAGCGCCGTGGCAGCCGGGTGGTCGTATGGCGGCCCCATTTAGAGAGCATTTCTGAAGACTAA ATGGGTAACAGTTTAAGATGCTGTTTAGCTTGTGTTCTTCCTTGTGGAGCTCTTGATTTGATCCGAATCGTTCATTTGAACGGCCACGTCGAAGAAATTGCCCATCCGATCACCGCCGGCGACGTCCTAAAAGCCAACCCAAATCACGTTCTTAGTAAGCCTTCTTCACAAGGGGTTGTTCGCCGGATTCTGATCCTCTCGCCGGAATCGGAGCTCAAAAGGGGAAGTATTTATTTCTTGATTCCGGCGACTTCTCTGCCGGAGAAGAAAAGAAACGCCGGAGCCAGCCTTAAAACTCCGTCAAGAAAAGTCAAACAATGCACCGTCTCCGCCGTGGCCGCCGCCGCAGACGTTGATTCTTACCTTTCCGATGTTGTCTCCGACAAGAAACCGTCGCGGCGGGAGCGCCGTGGCAGCCGGGTGGTCGTATGGCGGCCCCATTTAGAGAGCATTTCTGAAGACTAA ATGGGTAACAGTTTAAGATGCTGTTTAGCTTGTGTTCTTCCTTGTGGAGCTCTTGATTTGATCCGAATCGTTCATTTGAACGGCCACGTCGAAGAAATTGCCCATCCGATCACCGCCGGCGACGTCCTAAAAGCCAACCCAAATCACGTTCTTAGTAAGCCTTCTTCACAAGGGGTTGTTCGCCGGATTCTGATCCTCTCGCCGGAATCGGAGCTCAAAAGGGGAAGTATTTATTTCTTGATTCCGGCGACTTCTCTGCCGGAGAAGAAAAGAAACGCCGGAGCCAGCCTTAAAACTCCGTCAAGAAAAGTCAAACAATGCACCGTCTCCGCCGTGGCCGCCGCCGCAGACGTTGATTCTTACCTTTCCGATGTTGTCTCCGACAAGAAACCGTCGCGGCGGGAGCGCCGTGGCAGCCGGGTGGTCGTATGGCGGCCCCATTTAGAGAGCATTTCTGAAGACTAA MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGDVLKANPNHVLSKPSSQGVVRRILILSPESELKRGSIYFLIPATSLPEKKRNAGASLKTPSRKVKQCTVSAVAAAADVDSYLSDVVSDKKPSRRERRGSRVVVWRPHLESISED Homology
BLAST of HG10001570 vs. NCBI nr
Match: XP_038902054.1 (uncharacterized protein LOC120088703 [Benincasa hispida]) HSP 1 Score: 293.9 bits (751), Expect = 8.1e-76 Identity = 148/154 (96.10%), Postives = 151/154 (98.05%), Query Frame = 0
BLAST of HG10001570 vs. NCBI nr
Match: XP_004149378.1 (uncharacterized protein LOC101207122 [Cucumis sativus] >KGN47230.1 hypothetical protein Csa_017034 [Cucumis sativus]) HSP 1 Score: 287.3 bits (734), Expect = 7.6e-74 Identity = 143/154 (92.86%), Postives = 147/154 (95.45%), Query Frame = 0
BLAST of HG10001570 vs. NCBI nr
Match: XP_008463824.1 (PREDICTED: uncharacterized protein LOC103501874 [Cucumis melo] >KAA0057142.1 6,7-dimethyl-8-ribityllumazine synthase [Cucumis melo var. makuwa] >TYK24172.1 6,7-dimethyl-8-ribityllumazine synthase [Cucumis melo var. makuwa]) HSP 1 Score: 281.6 bits (719), Expect = 4.2e-72 Identity = 145/156 (92.95%), Postives = 149/156 (95.51%), Query Frame = 0
BLAST of HG10001570 vs. NCBI nr
Match: XP_022944509.1 (uncharacterized protein LOC111448946 [Cucurbita moschata]) HSP 1 Score: 270.0 bits (689), Expect = 1.3e-68 Identity = 136/154 (88.31%), Postives = 143/154 (92.86%), Query Frame = 0
BLAST of HG10001570 vs. NCBI nr
Match: KAG6570631.1 (hypothetical protein SDJN03_29546, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 269.2 bits (687), Expect = 2.1e-68 Identity = 136/154 (88.31%), Postives = 143/154 (92.86%), Query Frame = 0
BLAST of HG10001570 vs. ExPASy TrEMBL
Match: A0A0A0KBY5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G217470 PE=4 SV=1) HSP 1 Score: 287.3 bits (734), Expect = 3.7e-74 Identity = 143/154 (92.86%), Postives = 147/154 (95.45%), Query Frame = 0
BLAST of HG10001570 vs. ExPASy TrEMBL
Match: A0A5A7UMR0 (6,7-dimethyl-8-ribityllumazine synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold55219G00010 PE=4 SV=1) HSP 1 Score: 281.6 bits (719), Expect = 2.0e-72 Identity = 145/156 (92.95%), Postives = 149/156 (95.51%), Query Frame = 0
BLAST of HG10001570 vs. ExPASy TrEMBL
Match: A0A1S3CK32 (uncharacterized protein LOC103501874 OS=Cucumis melo OX=3656 GN=LOC103501874 PE=4 SV=1) HSP 1 Score: 281.6 bits (719), Expect = 2.0e-72 Identity = 145/156 (92.95%), Postives = 149/156 (95.51%), Query Frame = 0
BLAST of HG10001570 vs. ExPASy TrEMBL
Match: A0A6J1FWT9 (uncharacterized protein LOC111448946 OS=Cucurbita moschata OX=3662 GN=LOC111448946 PE=4 SV=1) HSP 1 Score: 270.0 bits (689), Expect = 6.1e-69 Identity = 136/154 (88.31%), Postives = 143/154 (92.86%), Query Frame = 0
BLAST of HG10001570 vs. ExPASy TrEMBL
Match: A0A6J1L2H4 (uncharacterized protein LOC111499799 OS=Cucurbita maxima OX=3661 GN=LOC111499799 PE=4 SV=1) HSP 1 Score: 252.3 bits (643), Expect = 1.3e-63 Identity = 130/155 (83.87%), Postives = 137/155 (88.39%), Query Frame = 0
BLAST of HG10001570 vs. TAIR 10
Match: AT2G30230.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06980.1); Has 167 Blast hits to 167 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 188.7 bits (478), Expect = 3.4e-48 Identity = 104/182 (57.14%), Postives = 122/182 (67.03%), Query Frame = 0
BLAST of HG10001570 vs. TAIR 10
Match: AT1G06980.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: sepal, male gametophyte, carpel; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30230.1); Has 159 Blast hits to 159 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 159; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 187.6 bits (475), Expect = 7.6e-48 Identity = 106/170 (62.35%), Postives = 120/170 (70.59%), Query Frame = 0
BLAST of HG10001570 vs. TAIR 10
Match: AT1G29195.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30230.1); Has 180 Blast hits to 180 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 180; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 140.2 bits (352), Expect = 1.4e-33 Identity = 83/188 (44.15%), Postives = 115/188 (61.17%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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