HG10001562 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10001562
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	SWR1 complex subunit 6
Location	Chr09: 18191365 .. 18193461 (+)
RNA-Seq Expression	HG10001562
Synteny	HG10001562

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGATGATGCTACGAATCCATTCCGACGCATGTCGAGTCGCACTCGGAAGGTCGCTCCTAAGATGGTTGCTGCCCTAGCGAGTAGCGACAACCGTACTCAGGTTTGTCTGGTGAACTAGATTTTTGCTTCTTTGTTATGAGTTATTGGTGCTATATTTGATTAGTAGGAGCCTGAATTCTATCCCTATAATTGATTAGGCAGCACTTGCTCGTCTCGAGGCATTGGAAAATGACAATGCGGGAATGGAAATAGTCGAAAACATTGACGATGAGGATGCTTCTCTCGATGATGAAGATCAAGGTTAATATGATGTCCTTCCTTCATCTATCTTCCTCCTTGGCCTTTTTCTTGTAGGGTGTTTTCTTCAATTACATCTATCAAATGTTAGACATCTGATATTTTTCCCATTCCTTTCTGTTGTACTGCTTATTTCCATCATCTAATTCCCTCCCAAATGGCATTGATTTTGGTATTTTGATTCTTGTTATTTATTAATCCAGGTATTGCTTAGGCTTTAGACTCTGGTGTATGCTCGAGAAAATTTTCATTTTCTCTATCTTTAGAATTTCTGTATTTCTGTTATGTAGTGGAAGATGGCCAGCAACAAAACTCAGATATTGATTTGGCCATGGAGTTTTAGTACTCAGTTAATTGCGCAAATTTTTGCAATGGTACCTGGATTTCTAATCACTAATCAGCCACTGAGGGGTGAGATATTCCAGGTTCATTCATGTGAATTTTTTTAGGGATTTTACAATTCCTGAGAGTTGGGGCCATAATGGAGAGGGATTGAATCTGCATTTAAAATGCAGCTCTCAGAACTAGAATTTGGTGATTGGGTTGATCTTACTTGCTACAAATTCTTACCCACCTAACTGGCAAGAAGATAGGTGGAGAAGTAATTCAGAAGACTGGTGATACGATTCTCTTAATTCTTGGACAAGTTCAACTGATATCCGGTTTCCTTATTAGTCTGAACTGGTGGCTTTTGTGTACGAGTGGTGCTGAAGAGATCAAGATCATGTTTTTCCAAGGGGTGGTACCTTATAGATGGGAACGGGAGTTTGGTTTGAGTTGGTGTCTCTCTCAAAATTCCTAGGACAATATCACCGAGCCAGCTGTTGTGTAGTCATCCCTTTTGGTGAAAAGCCAACTTGGTGTTGGCTAATGGTCGTCAAGGCTATCCCATGGATTTTGGGAAGGAATAAACCATAGAATTTTCTGAGAGAAGTGTCACAATATTCAGGTCATCTGATATTTCATCATTTTCTTGGTATCATCTTGGTGAACTCATTTCAAATTATTTGAAACTATTCTCTCTCTCTCTCTCTCTCTTTTTTTTTTTTTTTTTTTTTTTTTATTTGTCGAAGCCAGTTGGTGTAGTTCTTTTGTAGGCTCTATAGGCTTCAAAATCGGTTGATATGTCATCTCTTTTTCGTCCCTCCATTGTACTCATGTGTTTCAATGTGTTTAGTTCCGTATAAGAGTAATCAGTTCAAAATAAAATTCAATTCCAAGGAATAATAGAACCTGTCAACTTAAATTCTATTTTCTTGCGTCCATAATATACTTGCGCACTGATTCGAACAGATTGGATTATATTTTTCTACACCTTCAAGTGTTGTTTGGAATTTAATGTCGCTAATCTTTACCCCTTTTTTACCCCAATGCAGCATACATACAGAAGCGGCAATCAAAGGGCACTAAGCGCAAAACTAGACAGGCAAAAGCACTTGAAGCTAAAAAGGCCCCTAAAACTTTTATGGAGCTTCTGCACGAGGTTGGATCAAACATCTTCTACTTTGTGGCCTTATTAGATTACAATAAAAAGTTTGTTTAGATGTTGAGCTACCATATGCACTTATTATTCTTCTTACAAAAAAAACAGGCAAATCTGGAGTCTTTGCCTCCACATGTTCCTTCATACTTAAAGGCAGCCGTTGGACCTCCAAGCTCTACCTCTCGCCGGCATTTCTGCACGGTTTGTGGTTTTGCTGCTAGCTACACGTGCATAAGGTGTGGAATCCGCTTTTGTTCATCTCGTTGCCAAAATATACATAATGATACTCGTTGTTTGAAATTTGTTGCCTGA

mRNA sequence

ATGGATGATGATGCTACGAATCCATTCCGACGCATGTCGAGTCGCACTCGGAAGGTCGCTCCTAAGATGGTTGCTGCCCTAGCGAGTAGCGACAACCGTACTCAGGCAGCACTTGCTCGTCTCGAGGCATTGGAAAATGACAATGCGGGAATGGAAATAGTCGAAAACATTGACGATGAGGATGCTTCTCTCGATGATGAAGATCAAGCATACATACAGAAGCGGCAATCAAAGGGCACTAAGCGCAAAACTAGACAGGCAAAAGCACTTGAAGCTAAAAAGGCCCCTAAAACTTTTATGGAGCTTCTGCACGAGGCAAATCTGGAGTCTTTGCCTCCACATGTTCCTTCATACTTAAAGGCAGCCGTTGGACCTCCAAGCTCTACCTCTCGCCGGCATTTCTGCACGGTTTGTGGTTTTGCTGCTAGCTACACGTGCATAAGGTGTGGAATCCGCTTTTGTTCATCTCGTTGCCAAAATATACATAATGATACTCGTTGTTTGAAATTTGTTGCCTGA

Coding sequence (CDS)

ATGGATGATGATGCTACGAATCCATTCCGACGCATGTCGAGTCGCACTCGGAAGGTCGCTCCTAAGATGGTTGCTGCCCTAGCGAGTAGCGACAACCGTACTCAGGCAGCACTTGCTCGTCTCGAGGCATTGGAAAATGACAATGCGGGAATGGAAATAGTCGAAAACATTGACGATGAGGATGCTTCTCTCGATGATGAAGATCAAGCATACATACAGAAGCGGCAATCAAAGGGCACTAAGCGCAAAACTAGACAGGCAAAAGCACTTGAAGCTAAAAAGGCCCCTAAAACTTTTATGGAGCTTCTGCACGAGGCAAATCTGGAGTCTTTGCCTCCACATGTTCCTTCATACTTAAAGGCAGCCGTTGGACCTCCAAGCTCTACCTCTCGCCGGCATTTCTGCACGGTTTGTGGTTTTGCTGCTAGCTACACGTGCATAAGGTGTGGAATCCGCTTTTGTTCATCTCGTTGCCAAAATATACATAATGATACTCGTTGTTTGAAATTTGTTGCCTGA

Protein sequence

MDDDATNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEIVENIDDEDASLDDEDQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA

Homology

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BLAST of HG10001562 vs. NCBI nr
Match: XP_038901863.1 (SWR1 complex subunit 6 [Benincasa hispida] >XP_038901864.1 SWR1 complex subunit 6 [Benincasa hispida])

HSP 1 Score: 322.8 bits (826), Expect = 1.8e-84
Identity = 166/172 (96.51%), Postives = 169/172 (98.26%), Query Frame = 0


Query: 1   MDDDATNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEIVENIDDE 60
           MDDDATNPFRRMSSR RKVAPKMVAALASSDNRTQAALARLEALENDNAG+E VENIDDE
Sbjct: 1   MDDDATNPFRRMSSRNRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEAVENIDDE 60

Query: 61  DASLDDEDQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLK 120
           DASLDD++QAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLK
Sbjct: 61  DASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLK 120

Query: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 173
           AAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCS RCQNIHNDTRCLKFVA
Sbjct: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSCRCQNIHNDTRCLKFVA 172

[Close]

BLAST of HG10001562 vs. NCBI nr
Match: XP_004143171.1 (SWR1 complex subunit 6 [Cucumis sativus] >XP_011657114.1 SWR1 complex subunit 6 [Cucumis sativus] >XP_031743058.1 SWR1 complex subunit 6 [Cucumis sativus] >KGN47046.1 hypothetical protein Csa_020987 [Cucumis sativus])

HSP 1 Score: 322.0 bits (824), Expect = 3.1e-84
Identity = 167/172 (97.09%), Postives = 171/172 (99.42%), Query Frame = 0


Query: 1   MDDDATNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEIVENIDDE 60
           MDDD+TNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAG+E+VENIDDE
Sbjct: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVENIDDE 60

Query: 61  DASLDDEDQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLK 120
           DASLDD+DQAYI KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLK
Sbjct: 61  DASLDDDDQAYI-KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLK 120

Query: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 173
           AAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA
Sbjct: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 171

[Close]

BLAST of HG10001562 vs. NCBI nr
Match: XP_008463835.1 (PREDICTED: SWR1 complex subunit 6 [Cucumis melo] >XP_008463836.1 PREDICTED: SWR1 complex subunit 6 [Cucumis melo] >XP_008463837.1 PREDICTED: SWR1 complex subunit 6 [Cucumis melo])

HSP 1 Score: 322.0 bits (824), Expect = 3.1e-84
Identity = 167/172 (97.09%), Postives = 170/172 (98.84%), Query Frame = 0


Query: 1   MDDDATNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEIVENIDDE 60
           MDDD+TNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGME+VENIDDE
Sbjct: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDE 60

Query: 61  DASLDDEDQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLK 120
           DASLDD+DQAYI KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSY K
Sbjct: 61  DASLDDDDQAYI-KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYFK 120

Query: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 173
           AAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA
Sbjct: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 171

[Close]

BLAST of HG10001562 vs. NCBI nr
Match: XP_023512985.1 (SWR1 complex subunit 6 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 318.9 bits (816), Expect = 2.6e-83
Identity = 162/172 (94.19%), Postives = 170/172 (98.84%), Query Frame = 0


Query: 1   MDDDATNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEIVENIDDE 60
           MDDDATN FRRMSSRTRKVAPKMVAALASSDNR+QAALARLEALENDNAG+E++ENIDDE
Sbjct: 21  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDE 80

Query: 61  DASLDDEDQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLK 120
           DASLDD++QAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEA+LESLPPHVPSYLK
Sbjct: 81  DASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEASLESLPPHVPSYLK 140

Query: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 173
           AAVGPPSSTSRRHFCTVCGFAASYTCIRCG+RFCS RCQNIHNDTRCLKFVA
Sbjct: 141 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA 192

[Close]

BLAST of HG10001562 vs. NCBI nr
Match: XP_022943643.1 (SWR1 complex subunit 6 [Cucurbita moschata] >XP_022943644.1 SWR1 complex subunit 6 [Cucurbita moschata] >XP_022943645.1 SWR1 complex subunit 6 [Cucurbita moschata] >XP_022943647.1 SWR1 complex subunit 6 [Cucurbita moschata] >XP_022943648.1 SWR1 complex subunit 6 [Cucurbita moschata] >XP_023512986.1 SWR1 complex subunit 6 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023512987.1 SWR1 complex subunit 6 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 318.9 bits (816), Expect = 2.6e-83
Identity = 162/172 (94.19%), Postives = 170/172 (98.84%), Query Frame = 0


Query: 1   MDDDATNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEIVENIDDE 60
           MDDDATN FRRMSSRTRKVAPKMVAALASSDNR+QAALARLEALENDNAG+E++ENIDDE
Sbjct: 1   MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDE 60

Query: 61  DASLDDEDQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLK 120
           DASLDD++QAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEA+LESLPPHVPSYLK
Sbjct: 61  DASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEASLESLPPHVPSYLK 120

Query: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 173
           AAVGPPSSTSRRHFCTVCGFAASYTCIRCG+RFCS RCQNIHNDTRCLKFVA
Sbjct: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA 172

[Close]

BLAST of HG10001562 vs. ExPASy Swiss-Prot
Match: Q9FHW2 (SWR1 complex subunit 6 OS=Arabidopsis thaliana OX=3702 GN=SWC6 PE=1 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.3e-61
Identity = 123/173 (71.10%), Postives = 149/173 (86.13%), Query Frame = 0


Query: 1   MDDDATNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEIVENIDDE 60
           M+++ +N  RR+S+RTRKVA KM AAL S+DNRTQAA+ARLEALENDN  +E+++  DDE
Sbjct: 1   MEEEMSN--RRVSNRTRKVATKMAAALTSNDNRTQAAIARLEALENDNGAIEVIDLNDDE 60

Query: 61  DASLD-DEDQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYL 120
           +ASLD D+D  Y+QK+Q KG+KRKTRQAKALEA+KAPK+F+ELL EANLESLP HVP+YL
Sbjct: 61  EASLDEDDDLGYLQKKQHKGSKRKTRQAKALEARKAPKSFLELLQEANLESLPSHVPTYL 120

Query: 121 KAAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 173
           KAAVGPPSS+SRR+FC+VCG+ A Y C  CG+RFCS RCQNIH DTRC KFVA
Sbjct: 121 KAAVGPPSSSSRRYFCSVCGYIAGYNCCLCGMRFCSIRCQNIHKDTRCQKFVA 171

[Close]

BLAST of HG10001562 vs. ExPASy Swiss-Prot
Match: Q54NW0 (Zinc finger HIT domain-containing protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=znhit1 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.2e-15
Identity = 55/159 (34.59%), Postives = 83/159 (52.20%), Query Frame = 0


Query: 13  SSRTRKVAPKMVAALASSDNRT---QAALARLEALENDNAGMEIVENIDDEDASL-DDED 72
           SS+ +    K     +  D R    +   ARLE+L++DN    I    D+ED    DDE+
Sbjct: 14  SSKRKSQISKRYRVTSEEDRRNLKEKVISARLESLDDDNEQQPIGSRGDEEDNDYNDDEN 73

Query: 73  QAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLKAAVGPPSS 132
           +       +K      R+ K  E K     F ++L ++ LE+ P HVP+Y+ +    PS 
Sbjct: 74  EIVYTTPVNKKRLFIAREKKKNEKKSMNLNFNDVLEKSYLETFPDHVPTYI-SVQSKPSI 133

Query: 133 TSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRC 168
              RHFC++CG+  +YTC +C  R+CS +C N HN+TRC
Sbjct: 134 FPPRHFCSICGYIGAYTCKQCSSRYCSIKCFNYHNETRC 171

[Close]

BLAST of HG10001562 vs. ExPASy Swiss-Prot
Match: Q8R331 (Zinc finger HIT domain-containing protein 1 OS=Mus musculus OX=10090 GN=Znhit1 PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.0e-13
Identity = 53/132 (40.15%), Postives = 69/132 (52.27%), Query Frame = 0


Query: 40  RLEALENDNAGMEIVENIDDEDASLDDEDQAYIQKRQSKGTKRKTRQAKALEAK-KAPKT 99
           +LEALENDN         DD  A L    +   Q      T +K ++ +    K +  K 
Sbjct: 31  QLEALENDNFQ-------DDPHAGLPQLGKRLPQFDDDADTGKKKKKTRGDHFKLRFRKN 90

Query: 100 FMELLHEANLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRC 159
           F  LL E NL +     P+YL A  GPP S  +R FC VCGF + YTC+ CG R+C+ RC
Sbjct: 91  FQALLEEQNLSA--SEGPNYLTACAGPP-SRPQRPFCAVCGFPSPYTCVSCGARYCTVRC 150

Query: 160 QNIHNDTRCLKF 171
              H +TRCLK+
Sbjct: 151 LGTHQETRCLKW 152

[Close]

BLAST of HG10001562 vs. ExPASy Swiss-Prot
Match: Q24JY4 (Zinc finger HIT domain-containing protein 1 OS=Bos taurus OX=9913 GN=ZNHIT1 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.3e-12
Identity = 58/162 (35.80%), Postives = 79/162 (48.77%), Query Frame = 0


Query: 10  RRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEIVENIDDEDASLDDEDQ 69
           ++ S R++    + V   A+   R      +LEALENDN         DD  A L    +
Sbjct: 4   KKTSVRSQDPGQRRVLDRAARQRRIN---RQLEALENDNFQ-------DDPHAGLPQLGK 63

Query: 70  AYIQKRQSKGTKRKTRQAKALEAK-KAPKTFMELLHEANLESLPPHVPSYLKAAVGPPSS 129
              Q      T +K ++ +    K +  K F  LL E NL       P+YL A  GPP S
Sbjct: 64  RLPQFDDDADTGKKKKKTRGDHFKLRFRKNFQALLEEQNLS--VAEGPNYLTACAGPP-S 123

Query: 130 TSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKF 171
             +R FC VCGF + YTC+ CG R+C+ RC   H +TRCLK+
Sbjct: 124 RPQRPFCAVCGFPSPYTCVSCGARYCTVRCLGTHQETRCLKW 152

[Close]

BLAST of HG10001562 vs. ExPASy Swiss-Prot
Match: O43257 (Zinc finger HIT domain-containing protein 1 OS=Homo sapiens OX=9606 GN=ZNHIT1 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.3e-12
Identity = 58/162 (35.80%), Postives = 79/162 (48.77%), Query Frame = 0


Query: 10  RRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEIVENIDDEDASLDDEDQ 69
           ++ S R++    + V   A+   R      +LEALENDN         DD  A L    +
Sbjct: 4   KKTSVRSQDPGQRRVLDRAARQRRIN---RQLEALENDNFQ-------DDPHAGLPQLGK 63

Query: 70  AYIQKRQSKGTKRKTRQAKALEAK-KAPKTFMELLHEANLESLPPHVPSYLKAAVGPPSS 129
              Q      T +K ++ +    K +  K F  LL E NL       P+YL A  GPP S
Sbjct: 64  RLPQFDDDADTGKKKKKTRGDHFKLRFRKNFQALLEEQNLS--VAEGPNYLTACAGPP-S 123

Query: 130 TSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKF 171
             +R FC VCGF + YTC+ CG R+C+ RC   H +TRCLK+
Sbjct: 124 RPQRPFCAVCGFPSPYTCVSCGARYCTVRCLGTHQETRCLKW 152

[Close]

BLAST of HG10001562 vs. ExPASy TrEMBL
Match: A0A1S3CKL9 (SWR1 complex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103501880 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 1.5e-84
Identity = 167/172 (97.09%), Postives = 170/172 (98.84%), Query Frame = 0


Query: 1   MDDDATNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEIVENIDDE 60
           MDDD+TNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGME+VENIDDE
Sbjct: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDE 60

Query: 61  DASLDDEDQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLK 120
           DASLDD+DQAYI KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSY K
Sbjct: 61  DASLDDDDQAYI-KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYFK 120

Query: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 173
           AAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA
Sbjct: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 171

[Close]

BLAST of HG10001562 vs. ExPASy TrEMBL
Match: A0A0A0KH15 (HIT-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G181510 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 1.5e-84
Identity = 167/172 (97.09%), Postives = 171/172 (99.42%), Query Frame = 0


Query: 1   MDDDATNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEIVENIDDE 60
           MDDD+TNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAG+E+VENIDDE
Sbjct: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVENIDDE 60

Query: 61  DASLDDEDQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLK 120
           DASLDD+DQAYI KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLK
Sbjct: 61  DASLDDDDQAYI-KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLK 120

Query: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 173
           AAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA
Sbjct: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 171

[Close]

BLAST of HG10001562 vs. ExPASy TrEMBL
Match: A0A6J1FTL5 (SWR1 complex subunit 6 OS=Cucurbita moschata OX=3662 GN=LOC111448349 PE=4 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 1.3e-83
Identity = 162/172 (94.19%), Postives = 170/172 (98.84%), Query Frame = 0


Query: 1   MDDDATNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEIVENIDDE 60
           MDDDATN FRRMSSRTRKVAPKMVAALASSDNR+QAALARLEALENDNAG+E++ENIDDE
Sbjct: 1   MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDE 60

Query: 61  DASLDDEDQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLK 120
           DASLDD++QAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEA+LESLPPHVPSYLK
Sbjct: 61  DASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEASLESLPPHVPSYLK 120

Query: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 173
           AAVGPPSSTSRRHFCTVCGFAASYTCIRCG+RFCS RCQNIHNDTRCLKFVA
Sbjct: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA 172

[Close]

BLAST of HG10001562 vs. ExPASy TrEMBL
Match: A0A6J1JHH9 (SWR1 complex subunit 6 OS=Cucurbita maxima OX=3661 GN=LOC111484534 PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.2e-83
Identity = 161/172 (93.60%), Postives = 170/172 (98.84%), Query Frame = 0


Query: 1   MDDDATNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEIVENIDDE 60
           MDDDATN FRRMSSRTRKVAPKMVAALASSDNR+QAALARLEALENDNAG+E++ENIDDE
Sbjct: 1   MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDE 60

Query: 61  DASLDDEDQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLK 120
           DASLDD++QAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEA+LESLPPHVPSY+K
Sbjct: 61  DASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEASLESLPPHVPSYIK 120

Query: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 173
           AAVGPPSSTSRRHFCTVCGFAASYTCIRCG+RFCS RCQNIHNDTRCLKFVA
Sbjct: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA 172

[Close]

BLAST of HG10001562 vs. ExPASy TrEMBL
Match: A0A6J1D2Z0 (SWR1 complex subunit 6 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111017095 PE=4 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 4.8e-83
Identity = 163/172 (94.77%), Postives = 169/172 (98.26%), Query Frame = 0


Query: 1   MDDDATNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEIVENIDDE 60
           MDDDATN FRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGME+VENIDDE
Sbjct: 1   MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDE 60

Query: 61  DASLDDEDQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLK 120
           DASLDD+D AYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPP+VPSYLK
Sbjct: 61  DASLDDDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPYVPSYLK 120

Query: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 173
           AAVGPPSS+SRRHFCTVCGFAA+YTCIRCG+RFCS RCQNIHNDTRCLKFVA
Sbjct: 121 AAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA 172

[Close]

BLAST of HG10001562 vs. TAIR 10
Match: AT5G37055.1 (HIT-type Zinc finger family protein )

HSP 1 Score: 237.3 bits (604), Expect = 9.4e-63
Identity = 123/173 (71.10%), Postives = 149/173 (86.13%), Query Frame = 0


Query: 1   MDDDATNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEIVENIDDE 60
           M+++ +N  RR+S+RTRKVA KM AAL S+DNRTQAA+ARLEALENDN  +E+++  DDE
Sbjct: 1   MEEEMSN--RRVSNRTRKVATKMAAALTSNDNRTQAAIARLEALENDNGAIEVIDLNDDE 60

Query: 61  DASLD-DEDQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYL 120
           +ASLD D+D  Y+QK+Q KG+KRKTRQAKALEA+KAPK+F+ELL EANLESLP HVP+YL
Sbjct: 61  EASLDEDDDLGYLQKKQHKGSKRKTRQAKALEARKAPKSFLELLQEANLESLPSHVPTYL 120

Query: 121 KAAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 173
           KAAVGPPSS+SRR+FC+VCG+ A Y C  CG+RFCS RCQNIH DTRC KFVA
Sbjct: 121 KAAVGPPSSSSRRYFCSVCGYIAGYNCCLCGMRFCSIRCQNIHKDTRCQKFVA 171

The following BLAST results are available for this feature:

BLAST of HG10001562 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038901863.1	1.8e-84	96.51	SWR1 complex subunit 6 [Benincasa hispida] >XP_038901864.1 SWR1 complex subunit ...	[more]
XP_004143171.1	3.1e-84	97.09	SWR1 complex subunit 6 [Cucumis sativus] >XP_011657114.1 SWR1 complex subunit 6 ...	[more]
XP_008463835.1	3.1e-84	97.09	PREDICTED: SWR1 complex subunit 6 [Cucumis melo] >XP_008463836.1 PREDICTED: SWR1...	[more]
XP_023512985.1	2.6e-83	94.19	SWR1 complex subunit 6 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022943643.1	2.6e-83	94.19	SWR1 complex subunit 6 [Cucurbita moschata] >XP_022943644.1 SWR1 complex subunit...	[more]

BLAST of HG10001562 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FHW2	1.3e-61	71.10	SWR1 complex subunit 6 OS=Arabidopsis thaliana OX=3702 GN=SWC6 PE=1 SV=1	[more]
Q54NW0	4.2e-15	34.59	Zinc finger HIT domain-containing protein 1 homolog OS=Dictyostelium discoideum ...	[more]
Q8R331	3.0e-13	40.15	Zinc finger HIT domain-containing protein 1 OS=Mus musculus OX=10090 GN=Znhit1 P...	[more]
Q24JY4	4.3e-12	35.80	Zinc finger HIT domain-containing protein 1 OS=Bos taurus OX=9913 GN=ZNHIT1 PE=2...	[more]
O43257	4.3e-12	35.80	Zinc finger HIT domain-containing protein 1 OS=Homo sapiens OX=9606 GN=ZNHIT1 PE...	[more]

BLAST of HG10001562 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CKL9	1.5e-84	97.09	SWR1 complex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103501880 PE=4 SV=1	[more]
A0A0A0KH15	1.5e-84	97.09	HIT-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G181510 PE...	[more]
A0A6J1FTL5	1.3e-83	94.19	SWR1 complex subunit 6 OS=Cucurbita moschata OX=3662 GN=LOC111448349 PE=4 SV=1	[more]
A0A6J1JHH9	2.2e-83	93.60	SWR1 complex subunit 6 OS=Cucurbita maxima OX=3661 GN=LOC111484534 PE=4 SV=1	[more]
A0A6J1D2Z0	4.8e-83	94.77	SWR1 complex subunit 6 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111017095...	[more]

BLAST of HG10001562 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G37055.1	9.4e-63	71.10	HIT-type Zinc finger family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 27..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR13093:SF1	BNACNNG31940D PROTEIN	coord: 1..172
None	No IPR available	SUPERFAMILY	144232	HIT/MYND zinc finger-like	coord: 130..164
IPR007529	Zinc finger, HIT-type	PFAM	PF04438	zf-HIT	coord: 131..159 e-value: 1.3E-10 score: 40.9
IPR007529	Zinc finger, HIT-type	PROSITE	PS51083	ZF_HIT	coord: 135..167 score: 9.360636
IPR039723	Vps71/ZNHIT1	PANTHER	PTHR13093	ZINC FINGER HIT DOMAIN CONTAINING PROTEIN 1	coord: 1..172

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10001562.1	HG10001562.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043486	histone exchange
biological_process	GO:0006338	chromatin remodeling
cellular_component	GO:0000812	Swr1 complex
molecular_function	GO:0031491	nucleosome binding