HG10001500 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10001500
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	transcription initiation factor IIA subunit 1
Location	Chr09: 17601543 .. 17610490 (-)
RNA-Seq Expression	HG10001500
Synteny	HG10001500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACTTCCACGAGCTCTATCTACATCAATGTCATCGAGGATGTCATCAACAAGCTTCGCGATGAGTTCGTTGATAATGGTCCTGGGGAGGACGTTCTCAAGGAGCTTCAAGGAGTAATTCTTGATCTCCAATCTTGAAATTCTTGTTATTTTTCTTTGTCTCATTCTCTTAGCTTCTCTACTGAATTGAATATTTTCTTTTCTTTTTCAATCTATTTGAAGGAATCGATTGAATTTTTTCGGTGATTACTTTCTGGGTTTGATCCGATTCTTTCTAGGGTTTTGAGGCTTTGAAGCTAAATTAAGCTATGGTTGGGCTGATTGTCTTCTTTGTGGGAACTTTTTAGATGTGGGAGGCGAAAATGATGCAAGCGGGTGCCGTGACCGGTCCCATAGAGAGGTCTGCACCATCTAAGCCCACACCCGGAGGTCCTATAACTCCGGTTCACGATCTCAATGTTCCGTATGAGGGTACTGAAGAGTACGAAACTCCCACAGCCGATTTACTCTTTCCGCCGGTGATTACTTCTCTGTTCCTTCTACTAAATGTTTTCCGAAGTTCGTAATTAATAATCGACGTGATTTTGGTAACTGTAGACGCCACTACAGACTCCAATTCAAACCCCGTTACCGGGAACTGCTGACAATGCGATGTATAATGTTCCTACTGGACCGAGCGACCACTCTGCTTCTGGAACTGATGCTTCTCCAGCTGCTACCACTCCTGGCGGTAGCGCTAATAATAATGTTGAGGTCAGATCTGGAAGGCCAACGCCATATATGGTAATTACAGTTTGACTTTGACGCCAATGCTAATCTTTACATTTTCTCATTCCCTGCCGTTTACCCACTCCATACTGTCGTGATTGCATCTTTTTTTTTTCCACCTTTTATTTTTTGGATAAAAGGAATTGTTATATGTAGTCTTGGTCGCCGTTAATTTGATTTAAAGTGGATTAATGGCATTGATATGGATTTTACCATCAAAATTTTGAAGTATGCTGTTGATGGTTGAATATTCCATTATTTGGGGTTTTGATAGACGTCTACATTCTTCTTTCAGCAACCACCTTCTTGGATGGGTCAAAGAACTCCTGTAGACGTTAATATTGGTGAGTGTAGTGTTGAAGTAGTGGAAAGCTTCACAACAATAATTCTGTAGTAATTTATATTGATTGTATTTTGTAGCCTACGTGGAGGGGCGTGATGAACCAGACAGGGGAGCCGCTGGCGCTCACCCATCCCTCACACAGGTAACTTCTTTCTTGATTTGTGCTTTCATCATGAAAAAAATTGTTGCCTGATGTGAACCCCAAAACTTCATTGTGAATTTCATCTGCTTCTGATTTTGAATTACTCTACTCCTTGCTGCCATATACCCATTTACCTATTTGTACAAAACTTCAGTAACTTCATTGTGATGTTTAATATTTGGGAAACAATTCTCAGGACTTTTTCATGATGAACTCTGGGAAGCGTAAGCGTGATGATTTTGCTTCCCAATACCAGGCCAATGGGTTTATCCCACAGCAAGATGGAGCTGGAGATGCCAATAGTGTTTTTGAGATTGAGGTTTTGTTTTCTTACCTCTCAGTACTCAAATAGATTCTGTTCAGCCTTGGACTCGCTTGCCAATTTTCTTTCACATAATTTCAGTTCATAGCTTATTATTTTTATTATTTTGTCTGTCTTTTCAAGTAAAACAAGAGTTAAAGAGGGCATGAGTTCAATCCATGGTGGCCACCTACCTAGAATTTAATATCCTATGAGTTTCCTTAACACCCAAATGTTGTAGGGTCAAGCGGGTTGTCCCGTGAGATTAATCGAGGTGTGCGTAAGTTGGGCCGGACCTCTCAAGCCCTTTGAAATTATGTTGTTCCTCTCTCCCTAAAGGACCTACACGATAACACACTCCCTGGTTTGTTTCAAAAACCTTCTCTTCGGACGAACGAGAGGGAATTCCTTGATCATCTCTTTGCAACCCTATGTCTAACCAAGTATAAACCAAACTCTTCGAAGAAACAACTCCAAAATACATGAGCTAAATCACAACTTTGATATGATCAAGATTCTCTGCCATTCTCCTACAAAGAATGCAGCAAAAAGACCCAATCAAAATGGGCACCCTCTTGAAACCTGGACCACTTATCTAAAAAAAAGACACCCAGAACAAGGTATTAACTTTTTCTTGGAGAACCTGCCACACAAAATACTTACTTCATTGGGTATTTTCATCTTCTACAATGAGGCAAAGACATAACCACTTGAGGGAGAGGATTAACCAAACCAAGAAAAGAAGATTTACAAGACAAACCTTTGGATGGACTAGATGACTCCAAATATGAACATCCCTTCTTCCCAAAATTCAACAGAACTCCACAATCAAAGAAAGAAAGGCAATGATTCTGTTGTTTTCCTCTCAGATAGAGGACGATGGAACTCCTTGAGAGGTCAAATTTCAGTTCATAGTCTCGTGGGCAAGTTAGGGAATTAATAATAGTAACAACAGTGAAATTGTCTATTATCCCTTGGGGTGGATGCTTATGTTTTTCCTGCATGATTTTCATGTACATTATATAGCGAGACATAATAACATATGGAGCCATGCTACCACCTAATAAGCTAAGGAATGTTGCAGTTTCCCTCAATTTAAACATATAACATTTTCTGGTTTAAGCGTACATGATGTAAAATTAATTTTTGACGTGAAAACTTCAGCTATGTTTTCCATCGCTATAGGAAACCAGACAATAACTCAAAATGAATCCCACAATGGAGGGGAAACTGGAGAGCGACAGTTTCACATTCAAGCTCAATTATACATGCATTTCTCTTTATGTAAATTGAAAAATCCCAGACTATTTGAGAGGCTTAGTCTTTAGTTAACAAACTGATTTTGATTTTCCAGTGCCCTCAACAATTGCCAATAATTCTCTTATATTCCTCCCCAATGTGGGGGTACTCTGACAAACTTCAAGTCATCCCTTTACAAAACTTACCAACTGCCTTATCTAGCCGACAGATTGACTACCTTTATTTACCAGCTTGCTTCTGCTGCCTCACGTGTGTAATGTGGATTGGAAAGGTTGCTATATGTCTATAAGAGAAATTTTAAAAACTCAGTACTCTTTTAGATTCGTAATATTCTTGACCATAAATTGTGACCTTTATATTCTACTAAAACTCAACAACAACAAAAAAAGTTCGGGTGGCCAGACTTGGCTTTGTGGGCCTACAAGATAATCTGGGAAGGTAAGTCAAAGGGTGGTTCTGCAATCTGCATTATGGACCGTGCAAGAAATGGTTATTTGCTTCATATATAATTTACAGGTAGAACAATTAGTGTTGCCATTTGAATTGGCTAGACGTCAAGCAACTCCTCCTAGGTGTGTGTTTTAGAGGAACTTTTTGTAAAGGCTAACACTATGGTCTGTGGCAATTTGGGTCTTCAGTCATATTTGTTGTCTATCTTTTTAGCCATGAGACCCCCAACGCCTCCAACCACCAGAAGTTATGAGCTAAGAAGCGTGATCACAAATATTAGACATGGACCCACGTTAATTTTTGAAAATCTAGTATAGGACAGCACAGGGACATGCTTATTATAACATATGTGTGTGTGAGTGTGTGTGTGTGTGTATTTGTGATCTCATACTGAAATTGTTTTTCGTTTATTATGCTTATGCTTTTATGATACATCCAACCAACTAGTCAATTTTTAAAGAAAACCACCTTTCATTAAGATGATATCCTGGGGAGGAGATTTGGAAAATATCATTAGGCTTAATACCCCTCTTTGTAGGCTTTTATTTCTAAGGATTTTTAATTTTAATTTTTAATTTTTTTTAATAATTATAATTATTATTTTTAATACCCTGATATATTCTTTCATTTTTCTTAATGAAAGGGAAAGCTTGACTTCTTTTTTAAAAACCTTTCATTCAGAAGATGAAAATCAAAATACAACGGGTCCAAATTGAAGCAAGGAGAACATCCAGCAAGACAAGGTGCTCCCAAATTTATGAAACCAAAAAGTCATATCCCAAATATCCTCCCAAGAACTCTCTTTTGAGGAACGCTTTCTTTTCCTTTCCAGCTTGATAAACCACAAAATAACCAAAATCTACTGCCAAAGAATCCCTCACCTGGAATGGAGGATTCACAACAGCCTGTTCTCTCGAATGTTTGAATTCTGCACAAAGACCAAACTTGTCAAAATTTTAAATGATTGAAATCTTAAGTAAATTTGAAGTCAATAATGCTTAGGCCTTGATTAATACTTTTTTTCTCTGTCACTTGATGTATTTTAATTTCTATTTTCATCCATGCTGATTGTATTTATTTCCTATATCTGCTGCTGACGCTTCTAAAAGTGAGAATATTCTCTTGAGCTTTCTGTTAACAGTTATGACTAAATAGAACTCACGTGATTACATTTTGCTGAATGCTTTTTGTTTATTGTGATCAGTCTTTGACACTCCTTAATTGCAATCTTTTGCAGATAAGTGGATGCAATGCTTCTGATGGAAGGCCTGGCGTTATCACTTCTACAAAGAGTGCAACATCATCACATATTGAAAGATCATTATTGAAGATTCCACAACTTGATGGACCAATGCCTGATCCTTATGATGATGTGCTTTCAACACCCAATGTTAGCTCTCTTGCTCTCTCTCTCTCTTCTTCCCTTAAAGTTATAGAATTTTCTATCTTTAAAACAATGGAATATTTATGCAAGTATTAGTAACAGAAATTTTTATACTTTTACCCTTCTTTTTACTTGTTTTGATTTTGCAAGGTGGGTGCCTATTCTTCAGAAGGTTACTTGTCTGCCACTGTCTTTTGATTATCCTTTCATCTTTTTGTAGAAGTTAGGCATCTATTCCACGTCTTATAAGGATGTTCATAGTCATATAGATCGTTGTTTGGTAGTACAAAGCCTCATGGTGCTAGGTACAAGGCACAAACTTGTTATGGACGTCATGGAAGCAAGGGATTGTTTGCTCGGAAAATTAGAACCTTCCTCGATGAAAACAAATTAGAACTGTTGAGTTATACATGCTCAGTCACAGAGATAAATAGGCTCATACAAAATAATGTCAAAAACGTCAGCTGTTTGATACAAATGTGTTTAACCAAGAATGTTTGTTTGCGATTTCCTGGCTTCTTTCTAATGGTTAATATTAAAGCTTATGAAGGTGTTTGACTTTTGTTGATGATGGAAGACAAGATCATTTGAATAAATCTCAATAACAAGCATTATGGCATAGTGATCTGCCCTCTCTGTAATATCAATAATGATACCGACACCATGATAGCTACGTGAAAGATGCTTATTTAAGTATTGCTATTAAACAGCAACAAATCATTCTGTTGCTTTTGCTTAAAGGTGCTAGTAAATGTTCTCTCTAGTTGAGGAAAAAAATGTTCTCTCTAGTTGGTTATCAAGTAAACAAACAAAGTTATAGCGCTTTATATTAAAGCCCAATCGGTCTTTACTTTTCAGTATTTTGGAAGTGCCTACTCTCTTCCATAATTGATGACAGAGCTGTTCTTGGATCTGCACATTTTCTATGGTCTTGTCAAGTCTTAGCTCACTGTTTATGGTCAAATAAATCACTTTCTAGTCGCAATTAATTACTTGTAACACAGGATTTCTTTGCTTACTATATTGGACTGGACATTCTAGGTATTTTAATAATGGCTTGATTCTTCTTCTGGTTTTTGTTGCGTCCATCCTATGCGTTTTTTGGATTGAATTTTTGTTCATCCTACTTCTTGGTGATTGGAATTCTTCATATCATAATTAACAAAAATGACTTTCCCATTGCTTTATGTCCACTGAGTTTGTTTTGTTAATCATATTTCTGACATCCCCTGCAGATATACAATTACCAGGGTGTCTTCAATGAAGACTACAACATAGCAAATACACCAGCACCTAATGGTAAATGTTGCGAAGGATGTCTTCATGATTGTGACTATTTTATGACAAGGATGGAAATTTGGTTTTTTATTATCGTTAGAGAAAGATCCTAAAAGAAAGGTTTAAATTCAAATTTGGTTTTTAATTTTCATATCGAAGTAGTTTGCTTAGTCCATAAATTTTCATAAATATGCTATTGTCTTTCTCGTTAAATTTGTTGCATTGAATTTAATAGAAATCTTAAGTCACCCTTTTGAAATATAAAACATAAACAATGATAACAGACTTGATGTGTGGTTTAAAACATAAACTTGCTGGGTATAAAGTATAATGTAAAGTGTTGCCAAAATAAAGCAATTGATTTTACGTAATTCAAGGATCAGAATTGAACTTTTGGAAGGACAAAAAACAGCAGAAACAAGGGTGAAAGCTAAGGTTTCCTAGAAGATTTAAAGCAGAAACAAAATTTCTCTCTAATTCCAATATGTTCCTGTCATCTTTTCTTTACAGACCCACCAGTTAGCACTCCTGCCGTTGTCACTCAGGATGATGTTGGTGAAGAGGAGGAGGATGACGAGCCTTCATTGAACGAAGACGACGACGACGACGATTTGGATGATGTGGATCAAGGAGAGGAATTGAGCACACAGCATTTAGTTTTAGCTCAGTTTGACAAGGTACTTCTTTACCTCCTGGTTTGTAGGTGCAGTTGCAGCATATACTAGAGCATTTTTAGAATCTATATGGCCTTAAATATATATTATCATAATTTTCATGTCATAGGTTACTCGTACCAAGAGTAGGTGGAAATGTACACTAAAGGATGGAATTATGCATATTAACAACAAGGACATTCTCTTCAACAAGGTGATTTTTTCCCTCCAAAACTACAAGTTAGAATATTAACCGACTTCGGTTTTTCATGAAAGCTTGGTTTATTTGGTTTGGCAGGCGACCGGGGAATTCGACTTCTGAATTTTTATTGGAGGCATGTTCATTGGGAGGTTATATTTGATAGCAGCAGTGTTTTGAAAGAATTCCAGGAAGTTGGTTCATTGGGTGTTTAAGTTGTCTTCAGTTAATATTTGTTTTGTGAACGCACGAGAGGAAAAGGACATGTTGATGATTCCTTATGTTCATTTTGATGAATGTTATTAGCGTTTTGTATATAAGGAATGAGAGCTCTTTTGGCCTTCAATGCATGGCAACTTGAGGATTTTCGAGTAACATTTATCATTGCTCTAATGGAATATATTTGTAACTTCAACTCCGTATCATGCTCTTGGATTCTTTTTTCCTACCTAATAATTGAATCAAATTGCATTGTTATTCAAATTTTCACTGCTATAATCCTTCACACTTATCCTCAATTAGGGCTCCTTGTAATGTAATGAAACTGAAAAATGGTCGTAATGGTTCAAATTGCAATTGGTTGACTTCGGCTAATGATCGACTACATCGATGATTCATAGTCTCTTGACTTTTTAAGTGCTTATAGATAAATAATTTTCAAACACTTGAAAAGCTATTTTAAATACATCTTTCTTTTTTTTGTTGTGGTAAATTCTTTGAAAGCATCTTATTATTTGATTTGATTAGAGTATGTTTAGCATAATTTTGTGGCCAAAGCTACTATTTACACATTGAGGAAGCAAGGAAGTATGCTCTAATAGGTGTGTTTGTAATGGAATATGTTTGTAACCTGTTGAGCATAATTTTATAGGATGTTTTTTTTAGTAGGGGTGTTTGACCCAAGGAGTAAGTTTAGTTAAGGGAAGTGAAGTTGTGAACTCCACTCTTTGTTCGATCAAGGAATTTGTGAGTCCCACTATTCTCTTCTTGTTCCAAACGCCTCTTAGGGTGTGTTTGGCTCAAAGAGTTGGGAAGTAGGAGTTTGTAAAATCCACTCTTTGTTCGGTCAAGGAATTTGTGAGTCCCACTATTCTACTTCTTGTTCCAAACGTCTCTTAGAGTGTGTTTGACCCAAAGAGTTGGAAGTAGGAGTTTGTGAACTCCACTCTTTGTCTAAGAAGTTGGTGGGTCCCACTATTAAAAATATAAGTTAAGCCACAACTCTCCAGACTTCATAGTTCCTTACTCCTTACTATTCTACTCTTTATCACAAACACTCAGTTAGAGAATGTTTGGAATTATCAAGACTTCACTAACTTTACAAATTTCACAACTCCGCTCCATACTCCAAATGTTGAAGACCACATCTTCTTGGCTTTCTATCGGTTTTCAATTTCTATCTCTTTCAAGTTATATAAGTTGAATAAAATGATAATAAAATCCAACTTGTCATTGCCATCTTATGTAAATTCATTGGGAGTGTCTTGTTATCGGATCTGATTTGAGGGCGTTGAGCATAATTTTTAATGGCGAAATGAGATTCATGATTGAGACTTGAACGTAGAGAACAAATTACAACAAATGAATTGAATAGAAAGAATTTGAAAACGAAGCGGGATGTTAGATTATGAGTAGGAAGTGAGAGAGAGAGAGAGAGAGATTTCCCGCGTTACAAATCATCAAAAGCACAACATAAAACCAGAAGAAGCATTCATGGAGACTTTAATGGAAGTGGCGACGAACACATACACAAATACCGTACATGGATGGATTTTATGCAGAGCATCAAACGCGAGACTTGATCCACAATCTTCATCTTCTTACGGTGTGTTACTGGTTACGATGCATTGCGATTGAAAGAAAGTAAACAGTGTGGAAGGATCGGCGAATGTCGCCGCCACTGCTGGATGTTGCCAGCCACCAGGAGCTGCAAAACCTATACCTCTTTGATCGACATTACCGCCGCCGCCTGCGGCATTTCCGTTCGCGGATATTCTATTTCCGTCAATTTCAGGCAACGGCTGTGGCGATAAAGGGAGTGGCGATAGGAGAGGAAGAATCGCCTTCGAACAAGTGTCGGTACTACCAGAAGACATTGAGACGCTTGAAAGTTGATCGAGATGGAGACTCGCCGGCGCCTGCTTCTGTAATCTGGTTGGAGGTTTAG

mRNA sequence

ATGGCGACTTCCACGAGCTCTATCTACATCAATGTCATCGAGGATGTCATCAACAAGCTTCGCGATGAGTTCGTTGATAATGGTCCTGGGGAGGACGTTCTCAAGGAGCTTCAAGGAATGTGGGAGGCGAAAATGATGCAAGCGGGTGCCGTGACCGGTCCCATAGAGAGGTCTGCACCATCTAAGCCCACACCCGGAGGTCCTATAACTCCGGTTCACGATCTCAATGTTCCGTATGAGGGTACTGAAGAGTACGAAACTCCCACAGCCGATTTACTCTTTCCGCCGACGCCACTACAGACTCCAATTCAAACCCCGTTACCGGGAACTGCTGACAATGCGATGTATAATGTTCCTACTGGACCGAGCGACCACTCTGCTTCTGGAACTGATGCTTCTCCAGCTGCTACCACTCCTGGCGGTAGCGCTAATAATAATGTTGAGGTCAGATCTGGAAGGCCAACGCCATATATGCAACCACCTTCTTGGATGGGTCAAAGAACTCCTGTAGACGTTAATATTGCCTACGTGGAGGGGCGTGATGAACCAGACAGGGGAGCCGCTGGCGCTCACCCATCCCTCACACAGGACTTTTTCATGATGAACTCTGGGAAGCGTAAGCGTGATGATTTTGCTTCCCAATACCAGGCCAATGGGTTTATCCCACAGCAAGATGGAGCTGGAGATGCCAATAGTGTTTTTGAGATTGAGATAAGTGGATGCAATGCTTCTGATGGAAGGCCTGGCGTTATCACTTCTACAAAGAGTGCAACATCATCACATATTGAAAGATCATTATTGAAGATTCCACAACTTGATGGACCAATGCCTGATCCTTATGATGATGTGCTTTCAACACCCAATATATACAATTACCAGGGTGTCTTCAATGAAGACTACAACATAGCAAATACACCAGCACCTAATGACCCACCAGTTAGCACTCCTGCCGTTGTCACTCAGGATGATGTTGGTGAAGAGGAGGAGGATGACGAGCCTTCATTGAACGAAGACGACGACGACGACGATTTGGATGATGTGGATCAAGGAGAGGAATTGAGCACACAGCATTTAGTTTTAGCTCAGTTTGACAAGGTTACTCGTACCAAGAGTAGGTGGAAATGTACACTAAAGGATGGAATTATGCATATTAACAACAAGGACATTCTCTTCAACAAGGCAACGGCTGTGGCGATAAAGGGAGTGGCGATAGGAGAGGAAGAATCGCCTTCGAACAAGTGTCGGTACTACCAGAAGACATTGAGACGCTTGAAAGTTGATCGAGATGGAGACTCGCCGGCGCCTGCTTCTGTAATCTGGTTGGAGGTTTAG

Coding sequence (CDS)

ATGGCGACTTCCACGAGCTCTATCTACATCAATGTCATCGAGGATGTCATCAACAAGCTTCGCGATGAGTTCGTTGATAATGGTCCTGGGGAGGACGTTCTCAAGGAGCTTCAAGGAATGTGGGAGGCGAAAATGATGCAAGCGGGTGCCGTGACCGGTCCCATAGAGAGGTCTGCACCATCTAAGCCCACACCCGGAGGTCCTATAACTCCGGTTCACGATCTCAATGTTCCGTATGAGGGTACTGAAGAGTACGAAACTCCCACAGCCGATTTACTCTTTCCGCCGACGCCACTACAGACTCCAATTCAAACCCCGTTACCGGGAACTGCTGACAATGCGATGTATAATGTTCCTACTGGACCGAGCGACCACTCTGCTTCTGGAACTGATGCTTCTCCAGCTGCTACCACTCCTGGCGGTAGCGCTAATAATAATGTTGAGGTCAGATCTGGAAGGCCAACGCCATATATGCAACCACCTTCTTGGATGGGTCAAAGAACTCCTGTAGACGTTAATATTGCCTACGTGGAGGGGCGTGATGAACCAGACAGGGGAGCCGCTGGCGCTCACCCATCCCTCACACAGGACTTTTTCATGATGAACTCTGGGAAGCGTAAGCGTGATGATTTTGCTTCCCAATACCAGGCCAATGGGTTTATCCCACAGCAAGATGGAGCTGGAGATGCCAATAGTGTTTTTGAGATTGAGATAAGTGGATGCAATGCTTCTGATGGAAGGCCTGGCGTTATCACTTCTACAAAGAGTGCAACATCATCACATATTGAAAGATCATTATTGAAGATTCCACAACTTGATGGACCAATGCCTGATCCTTATGATGATGTGCTTTCAACACCCAATATATACAATTACCAGGGTGTCTTCAATGAAGACTACAACATAGCAAATACACCAGCACCTAATGACCCACCAGTTAGCACTCCTGCCGTTGTCACTCAGGATGATGTTGGTGAAGAGGAGGAGGATGACGAGCCTTCATTGAACGAAGACGACGACGACGACGATTTGGATGATGTGGATCAAGGAGAGGAATTGAGCACACAGCATTTAGTTTTAGCTCAGTTTGACAAGGTTACTCGTACCAAGAGTAGGTGGAAATGTACACTAAAGGATGGAATTATGCATATTAACAACAAGGACATTCTCTTCAACAAGGCAACGGCTGTGGCGATAAAGGGAGTGGCGATAGGAGAGGAAGAATCGCCTTCGAACAAGTGTCGGTACTACCAGAAGACATTGAGACGCTTGAAAGTTGATCGAGATGGAGACTCGCCGGCGCCTGCTTCTGTAATCTGGTTGGAGGTTTAG

Protein sequence

MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAPSKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNAMYNVPTGPSDHSASGTDASPAATTPGGSANNNVEVRSGRPTPYMQPPSWMGQRTPVDVNIAYVEGRDEPDRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDGAGDANSVFEIEISGCNASDGRPGVITSTKSATSSHIERSLLKIPQLDGPMPDPYDDVLSTPNIYNYQGVFNEDYNIANTPAPNDPPVSTPAVVTQDDVGEEEEDDEPSLNEDDDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATAVAIKGVAIGEEESPSNKCRYYQKTLRRLKVDRDGDSPAPASVIWLEV

Homology

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BLAST of HG10001500 vs. NCBI nr
Match: XP_038901376.1 (transcription initiation factor IIA subunit 1-like [Benincasa hispida])

HSP 1 Score: 771.5 bits (1991), Expect = 3.8e-219
Identity = 388/396 (97.98%), Postives = 390/396 (98.48%), Query Frame = 0


Query: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60
           MATSTSSIYINVIEDVINKLR+EFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP
Sbjct: 1   MATSTSSIYINVIEDVINKLREEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60

Query: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNAMYNVPT 120
           SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNAMYN+PT
Sbjct: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNAMYNIPT 120

Query: 121 GPSDHSASGTDASPAATTPGGSANNNVEVRSGRPTPYMQPPSWMGQRTPVDVNIAYVEGR 180
           GPSDHSASGTDASPAATTPGGS NNNVEVRSGRPTPYMQPPSWMGQRTPVDVNIAYVEGR
Sbjct: 121 GPSDHSASGTDASPAATTPGGSTNNNVEVRSGRPTPYMQPPSWMGQRTPVDVNIAYVEGR 180

Query: 181 DEPDRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDGAGDA-NSVFEIEIS 240
           DEPDRGA GAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDGAGDA NSVFEIEIS
Sbjct: 181 DEPDRGATGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDGAGDAVNSVFEIEIS 240

Query: 241 GCNASDGRPGVITSTKSATSSHIERSLLKIPQLDGPMPDPYDDVLSTPNIYNYQGVFNED 300
           GCNASDGRPG ITS KS TSSHIERSLLKIPQLDGPMPDPYDDVLSTPNIYNYQGVFNED
Sbjct: 241 GCNASDGRPGFITSAKSPTSSHIERSLLKIPQLDGPMPDPYDDVLSTPNIYNYQGVFNED 300

Query: 301 YNIANTPAPNDPPVSTPAVVTQDDVGEEEEDDEPSLNEDDDDDDLDDVDQGEELSTQHLV 360
           YNIANTPAPNDPPVSTPAVVTQDDVGEEEEDDEPSLNEDDDDDDLDDVDQGEELSTQHLV
Sbjct: 301 YNIANTPAPNDPPVSTPAVVTQDDVGEEEEDDEPSLNEDDDDDDLDDVDQGEELSTQHLV 360

Query: 361 LAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKAT 396
           LAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKAT
Sbjct: 361 LAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKAT 396

[Close]

BLAST of HG10001500 vs. NCBI nr
Match: XP_008464085.1 (PREDICTED: transcription initiation factor IIA subunit 1 [Cucumis melo])

HSP 1 Score: 760.8 bits (1963), Expect = 6.7e-216
Identity = 384/396 (96.97%), Postives = 387/396 (97.73%), Query Frame = 0


Query: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60
           MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP
Sbjct: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60

Query: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNAMYNVPT 120
           SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNAMYNVPT
Sbjct: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNAMYNVPT 120

Query: 121 GPSDHSASGTDASPAATTPGGSANNNVEVRSGRPTPYMQPPSWMGQRTPVDVNIAYVEGR 180
           GPSDHSASGTD SPAATTPGGS NNNVEVRSGRPTPYMQPPSWMGQRTPVDVNIAYVEGR
Sbjct: 121 GPSDHSASGTDDSPAATTPGGSGNNNVEVRSGRPTPYMQPPSWMGQRTPVDVNIAYVEGR 180

Query: 181 DEPDRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDGAGD-ANSVFEIEIS 240
           +E DRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDGAGD ANSVFEIEIS
Sbjct: 181 EEADRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDGAGDAANSVFEIEIS 240

Query: 241 GCNASDGRPGVITSTKSATSSHIERSLLKIPQLDGPMPDPYDDVLSTPNIYNYQGVFNED 300
           GCN+SDGRPGVITS KSATSS+IERSLLKIPQLDGPMPDPYDDVLSTPNIYNYQGVFNED
Sbjct: 241 GCNSSDGRPGVITSAKSATSSYIERSLLKIPQLDGPMPDPYDDVLSTPNIYNYQGVFNED 300

Query: 301 YNIANTPAPNDPPVSTPAVVTQDDVGEEEEDDEPSLNEDDDDDDLDDVDQGEELSTQHLV 360
           YNIANTPAPNDPP  TPAVVTQDDV EEEED EPSLNEDDDDDDLDDVDQGEELSTQHLV
Sbjct: 301 YNIANTPAPNDPPAGTPAVVTQDDVNEEEEDSEPSLNEDDDDDDLDDVDQGEELSTQHLV 360

Query: 361 LAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKAT 396
           LAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKAT
Sbjct: 361 LAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKAT 396

[Close]

BLAST of HG10001500 vs. NCBI nr
Match: XP_004143132.2 (LOW QUALITY PROTEIN: transcription initiation factor IIA large subunit [Cucumis sativus])

HSP 1 Score: 755.0 bits (1948), Expect = 3.7e-214
Identity = 383/397 (96.47%), Postives = 385/397 (96.98%), Query Frame = 0


Query: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60
           MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP
Sbjct: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60

Query: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNAMYNVPT 120
           SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPI  PLPGTADNAMYNVPT
Sbjct: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIXNPLPGTADNAMYNVPT 120

Query: 121 GPSDHSASGTDASPAATTPGGSANNNVEVRSGRPTPYMQPPSWMGQRTPVDVNIAYVEGR 180
           GPSDHSASGTDASPAATTPGGS NNNVEVRSGRPTPYMQPPSWMGQRTPVDVNIAYVEGR
Sbjct: 121 GPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYMQPPSWMGQRTPVDVNIAYVEGR 180

Query: 181 DE-PDRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDGAGD-ANSVFEIEI 240
           +E  DRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDGAGD ANSVFEIEI
Sbjct: 181 EEAADRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDGAGDAANSVFEIEI 240

Query: 241 SGCNASDGRPGVITSTKSATSSHIERSLLKIPQLDGPMPDPYDDVLSTPNIYNYQGVFNE 300
           SGCN+SDGRPG ITS KSATSSHIERSLLKIPQLDGPMPDPYDDVLSTPNIYNYQGVFNE
Sbjct: 241 SGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLDGPMPDPYDDVLSTPNIYNYQGVFNE 300

Query: 301 DYNIANTPAPNDPPVSTPAVVTQDDVGEEEEDDEPSLNEDDDDDDLDDVDQGEELSTQHL 360
           DYNIANTPAPNDPP  TPAVVTQDDV EEEED EPSLNEDDDDDDLDDVDQGEELSTQHL
Sbjct: 301 DYNIANTPAPNDPPAGTPAVVTQDDVNEEEEDSEPSLNEDDDDDDLDDVDQGEELSTQHL 360

Query: 361 VLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKAT 396
           VLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKAT
Sbjct: 361 VLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKAT 397

[Close]

BLAST of HG10001500 vs. NCBI nr
Match: XP_031745118.1 (LOW QUALITY PROTEIN: transcription initiation factor IIA subunit 1-like [Cucumis sativus])

HSP 1 Score: 755.0 bits (1948), Expect = 3.7e-214
Identity = 383/397 (96.47%), Postives = 385/397 (96.98%), Query Frame = 0


Query: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60
           MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP
Sbjct: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60

Query: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNAMYNVPT 120
           SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQ PLPGTADNAMYNVPT
Sbjct: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQXPLPGTADNAMYNVPT 120

Query: 121 GPSDHSASGTDASPAATTPGGSANNNVEVRSGRPTPYMQPPSWMGQRTPVDVNIAYVEGR 180
           GPSDHSASGTDASPAATTPGGS NNNVEVRSGRPTPYMQPPSWMGQRTPVDVNIAYVEGR
Sbjct: 121 GPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYMQPPSWMGQRTPVDVNIAYVEGR 180

Query: 181 DE-PDRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDGAGD-ANSVFEIEI 240
           +E  DRGAAGAHPSLTQDFFMMN GKRKRDDFASQYQANGFIPQQDGAGD ANSVFEIEI
Sbjct: 181 EEAADRGAAGAHPSLTQDFFMMNXGKRKRDDFASQYQANGFIPQQDGAGDAANSVFEIEI 240

Query: 241 SGCNASDGRPGVITSTKSATSSHIERSLLKIPQLDGPMPDPYDDVLSTPNIYNYQGVFNE 300
           SGCN+SDGRPG ITS KSATSSHIERSLLKIPQLDGPMPDPYDDVLSTPNIYNYQGVFNE
Sbjct: 241 SGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLDGPMPDPYDDVLSTPNIYNYQGVFNE 300

Query: 301 DYNIANTPAPNDPPVSTPAVVTQDDVGEEEEDDEPSLNEDDDDDDLDDVDQGEELSTQHL 360
           DYNIANTPAPNDPP  TPAVVTQDDV EEEED EPSLNEDDDDDDLDDVDQGEELSTQHL
Sbjct: 301 DYNIANTPAPNDPPAGTPAVVTQDDVNEEEEDSEPSLNEDDDDDDLDDVDQGEELSTQHL 360

Query: 361 VLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKAT 396
           VLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKAT
Sbjct: 361 VLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKAT 397

[Close]

BLAST of HG10001500 vs. NCBI nr
Match: KAA0061868.1 (transcription initiation factor IIA subunit 1 [Cucumis melo var. makuwa] >TYK15388.1 transcription initiation factor IIA subunit 1 [Cucumis melo var. makuwa])

HSP 1 Score: 754.6 bits (1947), Expect = 4.8e-214
Identity = 381/394 (96.70%), Postives = 384/394 (97.46%), Query Frame = 0


Query: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60
           MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP
Sbjct: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60

Query: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNAMYNVPT 120
           SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNAMYNVPT
Sbjct: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNAMYNVPT 120

Query: 121 GPSDHSASGTDASPAATTPGGSANNNVEVRSGRPTPYMQPPSWMGQRTPVDVNIAYVEGR 180
           GPSDHSASGTD SPAATTPGGS NNNV VRSGRPTPYMQPPSWMGQRTPVDVNIAYVEGR
Sbjct: 121 GPSDHSASGTDDSPAATTPGGSGNNNVVVRSGRPTPYMQPPSWMGQRTPVDVNIAYVEGR 180

Query: 181 DEPDRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDGAGD-ANSVFEIEIS 240
           +E DRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDGAGD ANSVFEIEIS
Sbjct: 181 EEADRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDGAGDAANSVFEIEIS 240

Query: 241 GCNASDGRPGVITSTKSATSSHIERSLLKIPQLDGPMPDPYDDVLSTPNIYNYQGVFNED 300
           GCN+SDGRPGVITS KSATSS+IERSLLKIPQLDGPMPDPYDDVLSTPNIYNYQGVFNED
Sbjct: 241 GCNSSDGRPGVITSAKSATSSYIERSLLKIPQLDGPMPDPYDDVLSTPNIYNYQGVFNED 300

Query: 301 YNIANTPAPNDPPVSTPAVVTQDDVGEEEEDDEPSLNEDDDDDDLDDVDQGEELSTQHLV 360
           YNIANTPAPNDPP  TPAVVTQDDV EEEED EPSLNEDDDDDDLDDVDQGEELSTQHLV
Sbjct: 301 YNIANTPAPNDPPAGTPAVVTQDDVNEEEEDSEPSLNEDDDDDDLDDVDQGEELSTQHLV 360

Query: 361 LAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNK 394
           LAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNK
Sbjct: 361 LAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNK 394

[Close]

BLAST of HG10001500 vs. ExPASy Swiss-Prot
Match: Q9USU9 (Transcription initiation factor IIA large subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=toa1 PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.2e-10
Identity = 98/416 (23.56%), Postives = 162/416 (38.94%), Query Frame = 0


Query: 8   IYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAPSKPTPGG 67
           +Y +VI DVI   R +F +NG  +  L+ELQ +W++K++     T P  ++      P G
Sbjct: 9   VYHHVILDVIANSRSDFEENGVDDATLRELQNLWQSKLVATDVATFPWAQA------PVG 68

Query: 68  PITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNAMYNVPTGPSDHSA 127
              P+  L  P  G     T + D+   P    +PI   +   A  A+  + T    H  
Sbjct: 69  TF-PIGQLFDPVSG---LRTDSLDVT-APAVANSPILNNI--AAIRAVQQMDTFAQQHGN 128

Query: 128 SGTDASPAATTPGGSAN--------NNVEVRSGRPTPY-------MQPPSWMGQRTPV-- 187
           S   + P  + P  + N         NV+       P+       +Q P+     +P+  
Sbjct: 129 SNYYSPPTPSLPQSATNISFDSSAIPNVQSNPNNTAPFPSYSSNSLQLPTNQTADSPIIN 188

Query: 188 ---DVNIAYVEGRDEPDRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQAN-------GF 247
                N+        PD  +  +   L     + N    K+ +      +N         
Sbjct: 189 DHSTANVTSTGQEHAPDSSSTNSFGGL----LLPNQNSPKKSELGETESSNTTPANSRND 248

Query: 248 IPQQDGAGDANSVFEIEISGCNASDGRPGVITSTKSATSSHIERSLLKIPQLDGPMPDPY 307
           +PQ DGA     + +++ +G  ++        + K+    +      +I Q+DG + D  
Sbjct: 249 VPQTDGA-----IHDLDDAGSPSNFESNRFAIAQKADAEIYEVLKKNRILQIDGTIED-- 308

Query: 308 DDVLSTPNIYNYQGVFNEDYNIANTPAPNDPPVSTPAVVTQDDVGEEEEDDEPSLNEDDD 367
                           NED           PPV TP+              + ++N D D
Sbjct: 309 ----------------NED--------EKKPPVDTPS--------------DEAINSDLD 362

Query: 368 DDDLDDVDQGEELST--QHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKA 395
           D D D+  + EE S   Q +VL  +DKV   K++WKC  +DG++ +N KD LF KA
Sbjct: 369 DPDSDEAPETEEGSDIGQAIVLCLYDKVNHHKNKWKCVFRDGVVGVNGKDYLFFKA 362

[Close]

BLAST of HG10001500 vs. ExPASy Swiss-Prot
Match: O08949 (Transcription initiation factor IIA subunit 1 OS=Rattus norvegicus OX=10116 GN=Gtf2a1 PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.1e-08
Identity = 103/408 (25.25%), Postives = 163/408 (39.95%), Query Frame = 0


Query: 8   IYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTG--------PIERSA 67
           +Y +VIEDVIN +RD F+D+G  E VL EL+ +WE K+MQ+ AV G         ++   
Sbjct: 13  LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAVDGFHSEEQQLLLQVQQ 72

Query: 68  PSKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNAMYNVP 127
             +P         H      + T   +  T  +L P +   T  Q  +P +      N  
Sbjct: 73  QHQPQQQQHHHHHHHQQAQPQQTVPQQAQTQQVLIPASQQATAPQVIVPDSKLIQHMNAS 132

Query: 128 TGPSDHSASGTDASPAATTPGGSANNN-----VEVRSGRPTPYMQPPSWMGQRTPVDVNI 187
           +  S  + + T A PA  TP      N       VR+     Y+  P    Q++ V    
Sbjct: 133 SITSAAATAATLALPAGVTPVQQILTNSGQLLQVVRAANGAQYIFQP----QQSVV---- 192

Query: 188 AYVEGRDEPDRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDGAGDANSVF 247
             ++ +  P     G    + Q       G              G  PQ    G      
Sbjct: 193 --LQQQVIPQMQPGGVQAPVIQQVLAPLPG--------------GISPQ---TGVIIQPQ 252

Query: 248 EIEISGCNASDGRPGVITSTKSATSSHIERSLLKIPQLDGPMPDPYDDVLSTPNIYNYQG 307
           +I  +G      +  VI +T +A +     +  +IP      P         P +    G
Sbjct: 253 QILFTG-----NKTQVIPTTVAAPTP----AQAQIPAAGQQQPQAQPAQQQAPLVLQVDG 312

Query: 308 VFNEDYNIANTPAPNDPPVSTPAVVTQDDVGEEEEDDEPSLNED--------DDDDDLDD 367
                    +T +  D          +D   +EEED E    ED        + +DD+ D
Sbjct: 313 T-------GDTSSEEDEDEE------EDYDDDEEEDKEKDGAEDGQVEEEPLNSEDDVSD 371

Query: 368 VDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKA 395
            +  E   T+++V+ Q+DK+ R+K++WK  LKDGIM++N +D +F+KA
Sbjct: 373 EEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKA 371

[Close]

BLAST of HG10001500 vs. ExPASy Swiss-Prot
Match: Q54G80 (Transcription initiation factor IIA subunit 1 OS=Dictyostelium discoideum OX=44689 GN=gtf2a1 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.3e-08
Identity = 62/200 (31.00%), Postives = 92/200 (46.00%), Query Frame = 0


Query: 220 FIPQQDGAGDANSVFEIEISGCNASDGRPGVITSTKSATSSHIERSLLKI----PQLDGP 279
           ++P Q    +  S      +G N ++       S+ S+ ++++  SL  I    PQ DG 
Sbjct: 114 YLPPQKEVSNGTSPTMNSSNGSNNNNNNNNSNNSSNSSNNNNLPSSLRSIMNPMPQNDGT 173

Query: 280 MPDPYDDVLSTPNIYNYQGVFNEDYNI---------ANTPAPNDPPVSTPAVVTQDDVGE 339
           + +  +D  +  N  +     N+D NI          N     D  +     +  DD  +
Sbjct: 174 LDESDNDDDNNNNNNDNDNENNKD-NIDKLIIDGFKKNFNFNGDEVIPQNDGLNDDDDLD 233

Query: 340 EEE-------DDEPSLNEDDDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKD 399
           +EE        +E SL  D DDDD DD D       +H VL Q++KV+R K++ KC  KD
Sbjct: 234 DEEIGGGGGKVEEDSLGSDLDDDDDDDPDP----IIEHFVLCQYEKVSRIKNKRKCNFKD 293

[Close]

BLAST of HG10001500 vs. ExPASy Swiss-Prot
Match: P52654 (Transcription initiation factor IIA subunit 1 OS=Drosophila melanogaster OX=7227 GN=TfIIA-L PE=1 SV=2)

HSP 1 Score: 61.2 bits (147), Expect = 3.3e-08
Identity = 97/420 (23.10%), Postives = 165/420 (39.29%), Query Frame = 0


Query: 3   TSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAPSK 62
           TS   +Y  VIEDVI  +RD F+D G  E VL+E++ +W  K++ + AV           
Sbjct: 6   TSVLKVYHAVIEDVITNVRDAFLDEGVDEQVLQEMKQVWRNKLLASKAV----------- 65

Query: 63  PTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNAMYNVPTGP 122
                                E    + D   PP     PI              V   P
Sbjct: 66  ---------------------ELSPDSGDGSHPP-----PI--------------VANNP 125

Query: 123 SDHSASGTDASPAATTPGGSANNNVEVRSGRPTPYMQPPSWMGQRTPVDVNIAYVEGRDE 182
             H A+   A  AA     +++ ++   S   +  +   S  G      +    V  + E
Sbjct: 126 KSHKAANAKAKKAAAATAVTSHQHIGGNSSM-SSLVGLKSSAGMAAGSGIRNGLVPIKQE 185

Query: 183 PD-RGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDGAGDANSVFEIEI--- 242
            + +     HP+         S  +K+   AS  Q  G IP      D N +  + I   
Sbjct: 186 VNSQNPPPLHPTSAA------SMMQKQQQAASSGQ--GSIPIV-ATLDPNRIMPVNITLP 245

Query: 243 --SGCNASDGRPGVITSTKSA---------TSSHIERSLLKIPQ--LDGPMPDPYDDVLS 302
             +G  +S+ R   I    SA          ++H+  S++ +P       +    +  LS
Sbjct: 246 SPAGSASSESRVLTIQVPASALQENQLTQILTAHLISSIMSLPTTLASSVLQQHVNAALS 305

Query: 303 TPNIYNYQGVFNEDYNIANTPAPNDPPVSTPAVVTQDDVGEEEEDDEPSLNED------- 362
           + N         +     ++   ++   S   +   DD   +++DDE + +ED       
Sbjct: 306 SANHQKTLAAAKQLDGALDSSDEDESEESDDNIDNDDDDDLDKDDDEDAEHEDAAEEEPL 364

Query: 363 DDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATAVA 399
           + +DD+ D D  E   T ++++ Q+DK+TR++++WK  LKDGIM++  KD +F K+   A
Sbjct: 366 NSEDDVTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVFQKSNGDA 364

[Close]

BLAST of HG10001500 vs. ExPASy Swiss-Prot
Match: P52655 (Transcription initiation factor IIA subunit 1 OS=Homo sapiens OX=9606 GN=GTF2A1 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 7.4e-08
Identity = 109/418 (26.08%), Postives = 167/418 (39.95%), Query Frame = 0


Query: 8   IYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTG--------PIERSA 67
           +Y +VIEDVIN +RD F+D+G  E VL EL+ +WE K+MQ+ AV G         ++   
Sbjct: 13  LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAVDGFHSEEQQLLLQVQQ 72

Query: 68  PSKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNAMYNVP 127
             +P         H      + T   +  T  +L P +   T  Q  +P +      N  
Sbjct: 73  QHQPQQQQHHHHHHHQQAQPQQTVPQQAQTQQVLIPASQQATAPQVIVPDSKLIQHMNA- 132

Query: 128 TGPSDHSASGTDASPAATTPGGSANNNVEVRSGRPTPYMQPPSWMGQRTPVDVNIAYVEG 187
              S+ SA+ T A+ A   P G             TP  Q  +  GQ   V         
Sbjct: 133 ---SNMSAAATAATLA--LPAG------------VTPVQQILTNSGQLLQV--------- 192

Query: 188 RDEPDRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDGAGDANSVFEIEIS 247
                R A GA     Q  F      + +     Q Q    IPQ    G    V +  ++
Sbjct: 193 ----VRAANGA-----QYIF------QPQQSVVLQQQV---IPQMQPGGVQAPVIQQVLA 252

Query: 248 GCNASDGRPGVITSTKSATSSHIERSLLKIPQ---LDGPMPDPYDDVLSTPNIYNYQGVF 307
                   PG I+          +  ++  PQ     G         ++ P     Q   
Sbjct: 253 PL------PGGISP---------QTGVIIQPQQILFTGNKTQVIPTTVAAPTPAQAQITA 312

Query: 308 NEDYNIANTPAPNDPPVSTPAVVTQDDVGEEEEDDEPSLNEDDDDD-------------- 367
                    PA    P+      T D   EE+ED+E   ++D+++D              
Sbjct: 313 TGQQQPQAQPAQTQAPLVLQVDGTGDTSSEEDEDEEEDYDDDEEEDKEKDGAEDGQVEEE 370

Query: 368 ---DLDDV--DQGEEL-STQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKA 395
                DDV  ++G+EL  T+++V+ Q+DK+ R+K++WK  LKDGIM++N +D +F+KA
Sbjct: 373 PLNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKA 370

[Close]

BLAST of HG10001500 vs. ExPASy TrEMBL
Match: A0A1S3CM61 (transcription initiation factor IIA subunit 1 OS=Cucumis melo OX=3656 GN=LOC103502057 PE=3 SV=1)

HSP 1 Score: 760.8 bits (1963), Expect = 3.3e-216
Identity = 384/396 (96.97%), Postives = 387/396 (97.73%), Query Frame = 0


Query: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60
           MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP
Sbjct: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60

Query: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNAMYNVPT 120
           SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNAMYNVPT
Sbjct: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNAMYNVPT 120

Query: 121 GPSDHSASGTDASPAATTPGGSANNNVEVRSGRPTPYMQPPSWMGQRTPVDVNIAYVEGR 180
           GPSDHSASGTD SPAATTPGGS NNNVEVRSGRPTPYMQPPSWMGQRTPVDVNIAYVEGR
Sbjct: 121 GPSDHSASGTDDSPAATTPGGSGNNNVEVRSGRPTPYMQPPSWMGQRTPVDVNIAYVEGR 180

Query: 181 DEPDRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDGAGD-ANSVFEIEIS 240
           +E DRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDGAGD ANSVFEIEIS
Sbjct: 181 EEADRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDGAGDAANSVFEIEIS 240

Query: 241 GCNASDGRPGVITSTKSATSSHIERSLLKIPQLDGPMPDPYDDVLSTPNIYNYQGVFNED 300
           GCN+SDGRPGVITS KSATSS+IERSLLKIPQLDGPMPDPYDDVLSTPNIYNYQGVFNED
Sbjct: 241 GCNSSDGRPGVITSAKSATSSYIERSLLKIPQLDGPMPDPYDDVLSTPNIYNYQGVFNED 300

Query: 301 YNIANTPAPNDPPVSTPAVVTQDDVGEEEEDDEPSLNEDDDDDDLDDVDQGEELSTQHLV 360
           YNIANTPAPNDPP  TPAVVTQDDV EEEED EPSLNEDDDDDDLDDVDQGEELSTQHLV
Sbjct: 301 YNIANTPAPNDPPAGTPAVVTQDDVNEEEEDSEPSLNEDDDDDDLDDVDQGEELSTQHLV 360

Query: 361 LAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKAT 396
           LAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKAT
Sbjct: 361 LAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKAT 396

[Close]

BLAST of HG10001500 vs. ExPASy TrEMBL
Match: A0A0A0KE66 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188660 PE=3 SV=1)

HSP 1 Score: 759.2 bits (1959), Expect = 9.5e-216
Identity = 385/397 (96.98%), Postives = 387/397 (97.48%), Query Frame = 0


Query: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60
           MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP
Sbjct: 135 MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 194

Query: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNAMYNVPT 120
           SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNAMYNVPT
Sbjct: 195 SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNAMYNVPT 254

Query: 121 GPSDHSASGTDASPAATTPGGSANNNVEVRSGRPTPYMQPPSWMGQRTPVDVNIAYVEGR 180
           GPSDHSASGTDASPAATTPGGS NNNVEVRSGRPTPYMQPPSWMGQRTPVDVNIAYVEGR
Sbjct: 255 GPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYMQPPSWMGQRTPVDVNIAYVEGR 314

Query: 181 DE-PDRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDGAGD-ANSVFEIEI 240
           +E  DRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDGAGD ANSVFEIEI
Sbjct: 315 EEAADRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDGAGDAANSVFEIEI 374

Query: 241 SGCNASDGRPGVITSTKSATSSHIERSLLKIPQLDGPMPDPYDDVLSTPNIYNYQGVFNE 300
           SGCN+SDGRPG ITS KSATSSHIERSLLKIPQLDGPMPDPYDDVLSTPNIYNYQGVFNE
Sbjct: 375 SGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLDGPMPDPYDDVLSTPNIYNYQGVFNE 434

Query: 301 DYNIANTPAPNDPPVSTPAVVTQDDVGEEEEDDEPSLNEDDDDDDLDDVDQGEELSTQHL 360
           DYNIANTPAPNDPP  TPAVVTQDDV EEEED EPSLNEDDDDDDLDDVDQGEELSTQHL
Sbjct: 435 DYNIANTPAPNDPPAGTPAVVTQDDVNEEEEDSEPSLNEDDDDDDLDDVDQGEELSTQHL 494

Query: 361 VLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKAT 396
           VLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKAT
Sbjct: 495 VLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKAT 531

[Close]

BLAST of HG10001500 vs. ExPASy TrEMBL
Match: A0A5D3CVW1 (Transcription initiation factor IIA subunit 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00280 PE=3 SV=1)

HSP 1 Score: 754.6 bits (1947), Expect = 2.3e-214
Identity = 381/394 (96.70%), Postives = 384/394 (97.46%), Query Frame = 0


Query: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60
           MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP
Sbjct: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60

Query: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNAMYNVPT 120
           SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNAMYNVPT
Sbjct: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNAMYNVPT 120

Query: 121 GPSDHSASGTDASPAATTPGGSANNNVEVRSGRPTPYMQPPSWMGQRTPVDVNIAYVEGR 180
           GPSDHSASGTD SPAATTPGGS NNNV VRSGRPTPYMQPPSWMGQRTPVDVNIAYVEGR
Sbjct: 121 GPSDHSASGTDDSPAATTPGGSGNNNVVVRSGRPTPYMQPPSWMGQRTPVDVNIAYVEGR 180

Query: 181 DEPDRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDGAGD-ANSVFEIEIS 240
           +E DRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDGAGD ANSVFEIEIS
Sbjct: 181 EEADRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDGAGDAANSVFEIEIS 240

Query: 241 GCNASDGRPGVITSTKSATSSHIERSLLKIPQLDGPMPDPYDDVLSTPNIYNYQGVFNED 300
           GCN+SDGRPGVITS KSATSS+IERSLLKIPQLDGPMPDPYDDVLSTPNIYNYQGVFNED
Sbjct: 241 GCNSSDGRPGVITSAKSATSSYIERSLLKIPQLDGPMPDPYDDVLSTPNIYNYQGVFNED 300

Query: 301 YNIANTPAPNDPPVSTPAVVTQDDVGEEEEDDEPSLNEDDDDDDLDDVDQGEELSTQHLV 360
           YNIANTPAPNDPP  TPAVVTQDDV EEEED EPSLNEDDDDDDLDDVDQGEELSTQHLV
Sbjct: 301 YNIANTPAPNDPPAGTPAVVTQDDVNEEEEDSEPSLNEDDDDDDLDDVDQGEELSTQHLV 360

Query: 361 LAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNK 394
           LAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNK
Sbjct: 361 LAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNK 394

[Close]

BLAST of HG10001500 vs. ExPASy TrEMBL
Match: A0A6J1FXQ4 (transcription initiation factor IIA large subunit-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111448672 PE=3 SV=1)

HSP 1 Score: 723.4 bits (1866), Expect = 5.8e-205
Identity = 367/396 (92.68%), Postives = 376/396 (94.95%), Query Frame = 0


Query: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60
           MA STSSIYINVIEDV+NKLRDEF DNGPGEDVLKELQGMWEAKMMQAGAV GPIERSAP
Sbjct: 1   MAISTSSIYINVIEDVVNKLRDEFTDNGPGEDVLKELQGMWEAKMMQAGAVNGPIERSAP 60

Query: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNAMYNVPT 120
           SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNAMYNVPT
Sbjct: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNAMYNVPT 120

Query: 121 GPSDHSASGTDASPAATTPGGSANNNVEVRSGRPTPYMQPPSWMGQRTPVDVNIAYVEGR 180
           GPSDHSASGTDASPA TTPGGSA +NV+VRSGRPT +MQPPSWMGQ+ PVDVNIAYVEGR
Sbjct: 121 GPSDHSASGTDASPAVTTPGGSA-SNVDVRSGRPTQFMQPPSWMGQKAPVDVNIAYVEGR 180

Query: 181 DEPDRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDGAGD-ANSVFEIEIS 240
           DE DRG    HP+LTQDFFMMNSGKRKRD FASQYQ NGFIPQQDGAGD ANSVFEIEIS
Sbjct: 181 DEADRGV--PHPALTQDFFMMNSGKRKRDGFASQYQTNGFIPQQDGAGDAANSVFEIEIS 240

Query: 241 GCNASDGRPGVITSTKSATSSHIERSLLKIPQLDGPMPDPYDDVLSTPNIYNYQGVFNED 300
           GCNASDGRPGVITS KSAT +HIERSL KIPQLDGP+PDPYDDVLSTPNIYNYQGVFNED
Sbjct: 241 GCNASDGRPGVITSAKSATLTHIERSLFKIPQLDGPIPDPYDDVLSTPNIYNYQGVFNED 300

Query: 301 YNIANTPAPNDPPVSTPAVVTQDDVGEEEEDDEPSLNEDDDDDDLDDVDQGEELSTQHLV 360
           YNIANTPAPNDPP  TPAVVTQDDVGEEEEDDEPSLNEDDDDDDLDDVDQGEE+STQHLV
Sbjct: 301 YNIANTPAPNDPPAGTPAVVTQDDVGEEEEDDEPSLNEDDDDDDLDDVDQGEEVSTQHLV 360

Query: 361 LAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKAT 396
           LAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKAT
Sbjct: 361 LAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKAT 393

[Close]

BLAST of HG10001500 vs. ExPASy TrEMBL
Match: A0A6J1JHB9 (transcription initiation factor IIA large subunit-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111484486 PE=3 SV=1)

HSP 1 Score: 721.8 bits (1862), Expect = 1.7e-204
Identity = 366/396 (92.42%), Postives = 376/396 (94.95%), Query Frame = 0


Query: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60
           MA STSSIYINVIEDV+NKLRDEF DNGPGEDVLKELQGMWEAKMMQAGAV GPIERSAP
Sbjct: 1   MAISTSSIYINVIEDVVNKLRDEFTDNGPGEDVLKELQGMWEAKMMQAGAVNGPIERSAP 60

Query: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNAMYNVPT 120
           SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNAMYNVPT
Sbjct: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNAMYNVPT 120

Query: 121 GPSDHSASGTDASPAATTPGGSANNNVEVRSGRPTPYMQPPSWMGQRTPVDVNIAYVEGR 180
           GPSDHSASGTDASPA TTPGGSA +NV+VRSGRPT +MQPPSWMGQ+ PVDVNIAYVEGR
Sbjct: 121 GPSDHSASGTDASPAVTTPGGSA-SNVDVRSGRPTQFMQPPSWMGQKAPVDVNIAYVEGR 180

Query: 181 DEPDRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDGAGD-ANSVFEIEIS 240
           DE DRG    HP+LTQDFFMMNSGKRKRD FASQYQ NGFIPQQDGAGD ANSVFEIEIS
Sbjct: 181 DEADRGV--PHPALTQDFFMMNSGKRKRDGFASQYQTNGFIPQQDGAGDAANSVFEIEIS 240

Query: 241 GCNASDGRPGVITSTKSATSSHIERSLLKIPQLDGPMPDPYDDVLSTPNIYNYQGVFNED 300
           GCNASDGRPGVITS KSAT +HI+RSL KIPQLDGP+PDPYDDVLSTPNIYNYQGVFNED
Sbjct: 241 GCNASDGRPGVITSAKSATLTHIKRSLFKIPQLDGPIPDPYDDVLSTPNIYNYQGVFNED 300

Query: 301 YNIANTPAPNDPPVSTPAVVTQDDVGEEEEDDEPSLNEDDDDDDLDDVDQGEELSTQHLV 360
           YNIANTPAPNDPP  TPAVVTQDDVGEEEEDDEPSLNEDDDDDDLDDVDQGEE+STQHLV
Sbjct: 301 YNIANTPAPNDPPAGTPAVVTQDDVGEEEEDDEPSLNEDDDDDDLDDVDQGEEVSTQHLV 360

Query: 361 LAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKAT 396
           LAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKAT
Sbjct: 361 LAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKAT 393

[Close]

BLAST of HG10001500 vs. TAIR 10
Match: AT1G07470.1 (Transcription factor IIA, alpha/beta subunit )

HSP 1 Score: 440.3 bits (1131), Expect = 1.9e-123
Identity = 242/396 (61.11%), Postives = 295/396 (74.49%), Query Frame = 0


Query: 3   TSTSSIYINVIEDVINKLRDEFVDN-GPGEDVLKELQGMWEAKMMQAGAVTGPIERSAPS 62
           T+TS++YI+VIEDV+NK+R+EF++N GPGE VL ELQG+WE KMMQAG + GPIERS+  
Sbjct: 5   TTTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSSAQ 64

Query: 63  KPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADN-AMYNVPT 122
           KPTPGGP+T  HDLNVPYEGTEEYETPTA++LFPPTPLQTP+ TPLPGTADN +MYN+PT
Sbjct: 65  KPTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPPTPLQTPLPTPLPGTADNSSMYNIPT 124

Query: 123 GPSDHSASGTDASPAATTPGGSANNNVEVRSGRPTPYMQPPS-WMGQRTPVDVNIAYVEG 182
           G SD+            TPG     N++V++ RP+PYM PPS W   R  +DVN+AYV+G
Sbjct: 125 GSSDY-----------PTPGTENGVNIDVKA-RPSPYMPPPSPWTNPR--LDVNVAYVDG 184

Query: 183 RDEPDRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDGAGDANSVFEIEIS 242
           RDEP+RG   ++   TQD F+ +SGKRKRDD ++ YQ  G IPQQDGA DA      E +
Sbjct: 185 RDEPERG--NSNQQFTQDLFVPSSGKRKRDDSSAHYQNGGSIPQQDGASDAIPEANFECA 244

Query: 243 GCNASDGRPGVITSTKSATSSHIERSLLKIPQLDGPMPDPYDDVLSTPNIYNYQGVFNED 302
               +      I      +SS       KIPQ+DGPMPDPYD++LSTPNIY+YQG  NE+
Sbjct: 245 ALRITYVGDRKIPRDLIGSSS-------KIPQVDGPMPDPYDEMLSTPNIYSYQGP-NEE 304

Query: 303 YNIANTPAPNDPPVSTPAVVTQDDVGEEEEDDEPSLNEDDDDDDLDDVDQGEELSTQHLV 362
           +N A TPAPN+   STP  V  D +    EDDE  LNEDDDDD+LDD++ GE+++TQHLV
Sbjct: 305 FNEARTPAPNEIQTSTPVAVPNDII----EDDEELLNEDDDDDELDDLESGEDMNTQHLV 364

Query: 363 LAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKAT 396
           LAQFDKVTRTKSRWKC+LKDGIMHIN+KDILFNKAT
Sbjct: 365 LAQFDKVTRTKSRWKCSLKDGIMHINDKDILFNKAT 370

[Close]

BLAST of HG10001500 vs. TAIR 10
Match: AT1G07480.1 (Transcription factor IIA, alpha/beta subunit )

HSP 1 Score: 438.0 bits (1125), Expect = 9.3e-123
Identity = 240/395 (60.76%), Postives = 294/395 (74.43%), Query Frame = 0


Query: 3   TSTSSIYINVIEDVINKLRDEFVDN-GPGEDVLKELQGMWEAKMMQAGAVTGPIERSAPS 62
           T+TS++YI+VIEDV+NK+R+EF++N GPGE VL ELQG+WE KMMQAG + GPIERS+  
Sbjct: 5   TTTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSSAQ 64

Query: 63  KPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADN-AMYNVPT 122
           KPTPGGP+T  HDLNVPYEGTEEYETPTA++LFPPTPLQTP+ TPLPGTADN +MYN+PT
Sbjct: 65  KPTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPPTPLQTPLPTPLPGTADNSSMYNIPT 124

Query: 123 GPSDHSASGTDASPAATTPGGSANNNVEVRSGRPTPYMQPPS-WMGQRTPVDVNIAYVEG 182
           G SD+            TPG     N++V++ RP+PYM PPS W   R  +DVN+AYV+G
Sbjct: 125 GSSDY-----------PTPGTENGVNIDVKA-RPSPYMPPPSPWTNPR--LDVNVAYVDG 184

Query: 183 RDEPDRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDGAGDANSVFEIEIS 242
           RDEP+RG   ++   TQD F+ +SGKRKRDD +  YQ  G IPQQDGAGDA      E  
Sbjct: 185 RDEPERG--NSNQQFTQDLFVPSSGKRKRDDSSGHYQNGGSIPQQDGAGDAIPEANFECD 244

Query: 243 GCNASDGRPGVITSTKSATSSHIERSLLKIPQLDGPMPDPYDDVLSTPNIYNYQGVFNED 302
               +      +     ++SS       KIPQ+DGPMPDPYD++LSTPNIY+YQG  +E+
Sbjct: 245 AFRITSIGDRKVPRDFFSSSS-------KIPQVDGPMPDPYDEMLSTPNIYSYQGP-SEE 304

Query: 303 YNIANTPAPNDPPVSTPAVVTQDDVGEEEEDDEPSLNEDDDDDDLDDVDQGEELSTQHLV 362
           +N A TPAPN+   STP  V  D +    EDDE  LNEDDDDD+LDD++ GE+++TQHLV
Sbjct: 305 FNEARTPAPNEIQTSTPVAVQNDII----EDDEELLNEDDDDDELDDLESGEDMNTQHLV 364

Query: 363 LAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKA 395
           LAQFDKVTRTKSRWKC+LKDGIMHIN+KDILFNKA
Sbjct: 365 LAQFDKVTRTKSRWKCSLKDGIMHINDKDILFNKA 369

[Close]

BLAST of HG10001500 vs. TAIR 10
Match: AT1G07480.2 (Transcription factor IIA, alpha/beta subunit )

HSP 1 Score: 438.0 bits (1125), Expect = 9.3e-123
Identity = 240/395 (60.76%), Postives = 294/395 (74.43%), Query Frame = 0


Query: 3   TSTSSIYINVIEDVINKLRDEFVDN-GPGEDVLKELQGMWEAKMMQAGAVTGPIERSAPS 62
           T+TS++YI+VIEDV+NK+R+EF++N GPGE VL ELQG+WE KMMQAG + GPIERS+  
Sbjct: 5   TTTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSSAQ 64

Query: 63  KPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADN-AMYNVPT 122
           KPTPGGP+T  HDLNVPYEGTEEYETPTA++LFPPTPLQTP+ TPLPGTADN +MYN+PT
Sbjct: 65  KPTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPPTPLQTPLPTPLPGTADNSSMYNIPT 124

Query: 123 GPSDHSASGTDASPAATTPGGSANNNVEVRSGRPTPYMQPPS-WMGQRTPVDVNIAYVEG 182
           G SD+            TPG     N++V++ RP+PYM PPS W   R  +DVN+AYV+G
Sbjct: 125 GSSDY-----------PTPGTENGVNIDVKA-RPSPYMPPPSPWTNPR--LDVNVAYVDG 184

Query: 183 RDEPDRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDGAGDANSVFEIEIS 242
           RDEP+RG   ++   TQD F+ +SGKRKRDD +  YQ  G IPQQDGAGDA      E  
Sbjct: 185 RDEPERG--NSNQQFTQDLFVPSSGKRKRDDSSGHYQNGGSIPQQDGAGDAIPEANFECD 244

Query: 243 GCNASDGRPGVITSTKSATSSHIERSLLKIPQLDGPMPDPYDDVLSTPNIYNYQGVFNED 302
               +      +     ++SS       KIPQ+DGPMPDPYD++LSTPNIY+YQG  +E+
Sbjct: 245 AFRITSIGDRKVPRDFFSSSS-------KIPQVDGPMPDPYDEMLSTPNIYSYQGP-SEE 304

Query: 303 YNIANTPAPNDPPVSTPAVVTQDDVGEEEEDDEPSLNEDDDDDDLDDVDQGEELSTQHLV 362
           +N A TPAPN+   STP  V  D +    EDDE  LNEDDDDD+LDD++ GE+++TQHLV
Sbjct: 305 FNEARTPAPNEIQTSTPVAVQNDII----EDDEELLNEDDDDDELDDLESGEDMNTQHLV 364

Query: 363 LAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKA 395
           LAQFDKVTRTKSRWKC+LKDGIMHIN+KDILFNKA
Sbjct: 365 LAQFDKVTRTKSRWKCSLKDGIMHINDKDILFNKA 369

[Close]

BLAST of HG10001500 vs. TAIR 10
Match: AT5G59230.1 (transcription factor-related )

HSP 1 Score: 64.3 bits (155), Expect = 2.8e-10
Identity = 34/75 (45.33%), Postives = 57/75 (76.00%), Query Frame = 0


Query: 321 QDDVGEEEEDDEPSLNEDDDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDG 380
           +D+   + +++E  LNEDDDD++ DD+D  ++++ QHLV+ QFDKV R+K++W+C    G
Sbjct: 109 RDEAIVDVDENEEPLNEDDDDEE-DDIDD-DDMNIQHLVMCQFDKVKRSKNKWECKFNAG 168

Query: 381 IMHINNKDILFNKAT 396
           +M IN K++LF++AT
Sbjct: 169 VMQINGKNVLFSQAT 181

The following BLAST results are available for this feature:

BLAST of HG10001500 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038901376.1	3.8e-219	97.98	transcription initiation factor IIA subunit 1-like [Benincasa hispida]	[more]
XP_008464085.1	6.7e-216	96.97	PREDICTED: transcription initiation factor IIA subunit 1 [Cucumis melo]	[more]
XP_004143132.2	3.7e-214	96.47	LOW QUALITY PROTEIN: transcription initiation factor IIA large subunit [Cucumis ...	[more]
XP_031745118.1	3.7e-214	96.47	LOW QUALITY PROTEIN: transcription initiation factor IIA subunit 1-like [Cucumis...	[more]
KAA0061868.1	4.8e-214	96.70	transcription initiation factor IIA subunit 1 [Cucumis melo var. makuwa] >TYK153...	[more]

BLAST of HG10001500 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9USU9	1.2e-10	23.56	Transcription initiation factor IIA large subunit OS=Schizosaccharomyces pombe (...	[more]
O08949	1.1e-08	25.25	Transcription initiation factor IIA subunit 1 OS=Rattus norvegicus OX=10116 GN=G...	[more]
Q54G80	3.3e-08	31.00	Transcription initiation factor IIA subunit 1 OS=Dictyostelium discoideum OX=446...	[more]
P52654	3.3e-08	23.10	Transcription initiation factor IIA subunit 1 OS=Drosophila melanogaster OX=7227...	[more]
P52655	7.4e-08	26.08	Transcription initiation factor IIA subunit 1 OS=Homo sapiens OX=9606 GN=GTF2A1 ...	[more]

BLAST of HG10001500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CM61	3.3e-216	96.97	transcription initiation factor IIA subunit 1 OS=Cucumis melo OX=3656 GN=LOC1035...	[more]
A0A0A0KE66	9.5e-216	96.98	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188660 PE=3 SV=1	[more]
A0A5D3CVW1	2.3e-214	96.70	Transcription initiation factor IIA subunit 1 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A6J1FXQ4	5.8e-205	92.68	transcription initiation factor IIA large subunit-like isoform X2 OS=Cucurbita m...	[more]
A0A6J1JHB9	1.7e-204	92.42	transcription initiation factor IIA large subunit-like isoform X2 OS=Cucurbita m...	[more]

BLAST of HG10001500 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07470.1	1.9e-123	61.11	Transcription factor IIA, alpha/beta subunit	[more]
AT1G07480.1	9.3e-123	60.76	Transcription factor IIA, alpha/beta subunit	[more]
AT1G07480.2	9.3e-123	60.76	Transcription factor IIA, alpha/beta subunit	[more]
AT5G59230.1	2.8e-10	45.33	transcription factor-related	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004855	Transcription factor IIA, alpha/beta subunit	SMART	SM01371	TFIIA_2	coord: 7..395 e-value: 5.3E-91 score: 318.3
IPR004855	Transcription factor IIA, alpha/beta subunit	PFAM	PF03153	TFIIA	coord: 261..395 e-value: 8.8E-29 score: 101.7 coord: 8..208 e-value: 7.9E-16 score: 59.0
IPR004855	Transcription factor IIA, alpha/beta subunit	PANTHER	PTHR12694	TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 1	coord: 2..395
None	No IPR available	GENE3D	1.10.287.100		coord: 1..53 e-value: 1.9E-20 score: 74.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 303..348
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 322..348
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..166
None	No IPR available	PANTHER	PTHR12694:SF16	BNAC08G45360D PROTEIN	coord: 2..395
None	No IPR available	CDD	cd07976	TFIIA_alpha_beta_like	coord: 355..396 e-value: 4.25248E-24 score: 94.1283
None	No IPR available	CDD	cd07976	TFIIA_alpha_beta_like	coord: 5..62 e-value: 7.32445E-17 score: 73.7127
None	No IPR available	SUPERFAMILY	47396	Transcription factor IIA (TFIIA), alpha-helical domain	coord: 4..46
IPR009088	Transcription factor IIA, beta-barrel	GENE3D	2.30.18.10		coord: 326..398 e-value: 1.0E-21 score: 78.1
IPR009088	Transcription factor IIA, beta-barrel	SUPERFAMILY	50784	Transcription factor IIA (TFIIA), beta-barrel domain	coord: 343..396

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10001500.1	HG10001500.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005672	transcription factor TFIIA complex
molecular_function	GO:0003743	translation initiation factor activity