HG10001499 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10001499
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Major viral transcription factor
Location	Chr09: 17601515 .. 17601889 (+)
RNA-Seq Expression	HG10001499
Synteny	HG10001499

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAACGAACACAAAGCCAGATTACCTAAACCTCCAACCAGATTACAGAAGCAGGCGCCGGCGAGTCTCCATCTCGATCAACTTTCAAGCGTCTCAATGTCTTCTGGTAGTACCGACACTTGTTCGAAGGCGATTCTTCCTCTCCTATCGCCACTCCCTTTATCGCCACAGCCGTTGCCTGAAATTGACGGAAATAGAATATCCGCGAACGGAAATGCCGCAGGCGGCGGCGGTAATGTCGATCAAAGAGGTATAGGTTTTGCAGCTCCTGGTGGCTGGCAACATCCAGCAGTGGCGGCGACATTCGCCGATCCTTCCACACTGTTTACTTTCTTTCAATCGCAATGCATCGTAACCAGTAACACACCGTAA

mRNA sequence

ATGGAAAACGAACACAAAGCCAGATTACCTAAACCTCCAACCAGATTACAGAAGCAGGCGCCGGCGAGTCTCCATCTCGATCAACTTTCAAGCGTCTCAATGTCTTCTGGTAGTACCGACACTTGTTCGAAGGCGATTCTTCCTCTCCTATCGCCACTCCCTTTATCGCCACAGCCGTTGCCTGAAATTGACGGAAATAGAATATCCGCGAACGGAAATGCCGCAGGCGGCGGCGGTAATGTCGATCAAAGAGGTATAGGTTTTGCAGCTCCTGGTGGCTGGCAACATCCAGCAGTGGCGGCGACATTCGCCGATCCTTCCACACTGTTTACTTTCTTTCAATCGCAATGCATCGTAACCAGTAACACACCGTAA

Coding sequence (CDS)

ATGGAAAACGAACACAAAGCCAGATTACCTAAACCTCCAACCAGATTACAGAAGCAGGCGCCGGCGAGTCTCCATCTCGATCAACTTTCAAGCGTCTCAATGTCTTCTGGTAGTACCGACACTTGTTCGAAGGCGATTCTTCCTCTCCTATCGCCACTCCCTTTATCGCCACAGCCGTTGCCTGAAATTGACGGAAATAGAATATCCGCGAACGGAAATGCCGCAGGCGGCGGCGGTAATGTCGATCAAAGAGGTATAGGTTTTGCAGCTCCTGGTGGCTGGCAACATCCAGCAGTGGCGGCGACATTCGCCGATCCTTCCACACTGTTTACTTTCTTTCAATCGCAATGCATCGTAACCAGTAACACACCGTAA

Protein sequence

MENEHKARLPKPPTRLQKQAPASLHLDQLSSVSMSSGSTDTCSKAILPLLSPLPLSPQPLPEIDGNRISANGNAAGGGGNVDQRGIGFAAPGGWQHPAVAATFADPSTLFTFFQSQCIVTSNTP

Homology

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BLAST of HG10001499 vs. NCBI nr
Match: XP_038902307.1 (uncharacterized protein LOC120088941 [Benincasa hispida])

HSP 1 Score: 233.4 bits (594), Expect = 1.0e-57
Identity = 121/125 (96.80%), Postives = 121/125 (96.80%), Query Frame = 0


Query: 1   MENEHKARLPKPPTRLQKQAPASLHLDQLSSVSMSSGSTDTCSKAILPLLSPLPLSPQPL 60
           MENEHKARLPKPPTRLQKQAPASLHLDQLSSVSMSSGS DTCSKAILPLLSPLPLSPQPL
Sbjct: 16  MENEHKARLPKPPTRLQKQAPASLHLDQLSSVSMSSGSADTCSKAILPLLSPLPLSPQPL 75

Query: 61  PEIDGNRISANGNAA-GGGGNVDQRGIGFAAPGGWQHPAVAATFADPSTLFTFFQSQCIV 120
           PEIDGNRISANGNAA GGGGN DQRGIGFAAPGGWQHPAVAATF DPSTLFTFFQSQCIV
Sbjct: 76  PEIDGNRISANGNAADGGGGNGDQRGIGFAAPGGWQHPAVAATFPDPSTLFTFFQSQCIV 135

Query: 121 TSNTP 125
           TSNTP
Sbjct: 136 TSNTP 140

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BLAST of HG10001499 vs. NCBI nr
Match: XP_011657141.1 (uncharacterized protein LOC105435808 [Cucumis sativus] >XP_031742438.1 uncharacterized protein LOC116404357 [Cucumis sativus] >KAE8645882.1 hypothetical protein Csa_017707 [Cucumis sativus])

HSP 1 Score: 218.8 bits (556), Expect = 2.7e-53
Identity = 113/125 (90.40%), Postives = 116/125 (92.80%), Query Frame = 0


Query: 1   MENEHKARLPKPPTRLQKQAPASLHLDQLSSVSMSSGSTDTCSKAILPLLSPLPLSPQPL 60
           MENE+K RLPKPPTRLQKQAPASLHLDQLSSVSMSS S D CSKAILPLLSPLPLSPQPL
Sbjct: 16  MENEYKPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDICSKAILPLLSPLPLSPQPL 75

Query: 61  PEIDGNRISANGNAA-GGGGNVDQRGIGFAAPGGWQHPAVAATFADPSTLFTFFQSQCIV 120
           PEIDGNRISANGNA  GGGGN DQRGIGF APGGWQHPAVAATF DPSTLFTFFQSQC+V
Sbjct: 76  PEIDGNRISANGNAVDGGGGNGDQRGIGFVAPGGWQHPAVAATFPDPSTLFTFFQSQCMV 135

Query: 121 TSNTP 125
           +SNTP
Sbjct: 136 SSNTP 140

[Close]

BLAST of HG10001499 vs. NCBI nr
Match: KAA0061869.1 (uncharacterized protein E6C27_scaffold89G001110 [Cucumis melo var. makuwa] >TYK15387.1 uncharacterized protein E5676_scaffold571G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 213.8 bits (543), Expect = 8.6e-52
Identity = 113/125 (90.40%), Postives = 114/125 (91.20%), Query Frame = 0


Query: 1   MENEHKARLPKPPTRLQKQAPASLHLDQLSSVSMSSGSTDTCSKAILPLLSPLPLSPQPL 60
           MENE K RLPKPPTRLQKQAPASLHLDQLSSVSMSS S DT SKAILPLLSPLPLSPQPL
Sbjct: 1   MENELKPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDTYSKAILPLLSPLPLSPQPL 60

Query: 61  PEIDGNRISANGNAA-GGGGNVDQRGIGFAAPGGWQHPAVAATFADPSTLFTFFQSQCIV 120
           PEIDGNRISA GNA  GGGGN DQRGIGF APGGWQHPAVAATF DPSTLFTFFQSQCIV
Sbjct: 61  PEIDGNRISATGNAVEGGGGNGDQRGIGFVAPGGWQHPAVAATFPDPSTLFTFFQSQCIV 120

Query: 121 TSNTP 125
           +SNTP
Sbjct: 121 SSNTP 125

[Close]

BLAST of HG10001499 vs. NCBI nr
Match: KAG6605440.1 (hypothetical protein SDJN03_02757, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035388.1 hypothetical protein SDJN02_02184, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 191.8 bits (486), Expect = 3.5e-45
Identity = 101/124 (81.45%), Postives = 105/124 (84.68%), Query Frame = 0


Query: 1   MENEHKARLPKPPTRLQKQAPASLHLDQLSSVSMSSGSTDTCSKAILPLLSPLPLSPQPL 60
           ME EHK+RLPKPPTRLQKQAPASLHLDQL+SVSMSSGS D  SKAILPLLSPLP SPQP 
Sbjct: 16  MEKEHKSRLPKPPTRLQKQAPASLHLDQLTSVSMSSGSADISSKAILPLLSPLPSSPQPF 75

Query: 61  PEIDGNRISANGNAAGGGGNVDQRGIGFAAPGGWQHPAVAATFADPSTLFTFFQSQCIVT 120
           PE +GNR +ANGN   GG   DQRGI FA PGGWQHPAVA TFADPSTLFTFFQSQCIV 
Sbjct: 76  PETEGNRRAANGNTVDGGYG-DQRGICFAPPGGWQHPAVATTFADPSTLFTFFQSQCIVN 135

Query: 121 SNTP 125
           S TP
Sbjct: 136 SKTP 138

[Close]

BLAST of HG10001499 vs. NCBI nr
Match: KAG6570684.1 (hypothetical protein SDJN03_29599, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010531.1 hypothetical protein SDJN02_27325, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 184.9 bits (468), Expect = 4.3e-43
Identity = 92/124 (74.19%), Postives = 105/124 (84.68%), Query Frame = 0


Query: 1   MENEHKARLPKPPTRLQKQAPASLHLDQLSSVSMSSGSTDTCSKAILPLLSPLPLSPQPL 60
           M+N+   R+PKPPTRLQKQAPA L+LDQLSSVSM S  T+T SK +LPLLSPLP SPQP 
Sbjct: 16  MDNDRGGRIPKPPTRLQKQAPAGLYLDQLSSVSMPSVGTETYSKTVLPLLSPLPSSPQPF 75

Query: 61  PEIDGNRISANGNAAGGGGNVDQRGIGFAAPGGWQHPAVAATFADPSTLFTFFQSQCIVT 120
           PE +GNR+ ANGN    GGN DQRGI FA+PGGWQHPAVAAT+ADPSTLFTFFQS+CI+T
Sbjct: 76  PETEGNRMLANGNGVNSGGNGDQRGIVFASPGGWQHPAVAATYADPSTLFTFFQSKCIIT 135

Query: 121 SNTP 125
           S+TP
Sbjct: 136 SSTP 139

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BLAST of HG10001499 vs. ExPASy TrEMBL
Match: A0A0A0KBQ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188670 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.3e-53
Identity = 113/125 (90.40%), Postives = 116/125 (92.80%), Query Frame = 0


Query: 1   MENEHKARLPKPPTRLQKQAPASLHLDQLSSVSMSSGSTDTCSKAILPLLSPLPLSPQPL 60
           MENE+K RLPKPPTRLQKQAPASLHLDQLSSVSMSS S D CSKAILPLLSPLPLSPQPL
Sbjct: 16  MENEYKPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDICSKAILPLLSPLPLSPQPL 75

Query: 61  PEIDGNRISANGNAA-GGGGNVDQRGIGFAAPGGWQHPAVAATFADPSTLFTFFQSQCIV 120
           PEIDGNRISANGNA  GGGGN DQRGIGF APGGWQHPAVAATF DPSTLFTFFQSQC+V
Sbjct: 76  PEIDGNRISANGNAVDGGGGNGDQRGIGFVAPGGWQHPAVAATFPDPSTLFTFFQSQCMV 135

Query: 121 TSNTP 125
           +SNTP
Sbjct: 136 SSNTP 140

[Close]

BLAST of HG10001499 vs. ExPASy TrEMBL
Match: A0A5A7V856 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00270 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 4.2e-52
Identity = 113/125 (90.40%), Postives = 114/125 (91.20%), Query Frame = 0


Query: 1   MENEHKARLPKPPTRLQKQAPASLHLDQLSSVSMSSGSTDTCSKAILPLLSPLPLSPQPL 60
           MENE K RLPKPPTRLQKQAPASLHLDQLSSVSMSS S DT SKAILPLLSPLPLSPQPL
Sbjct: 1   MENELKPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDTYSKAILPLLSPLPLSPQPL 60

Query: 61  PEIDGNRISANGNAA-GGGGNVDQRGIGFAAPGGWQHPAVAATFADPSTLFTFFQSQCIV 120
           PEIDGNRISA GNA  GGGGN DQRGIGF APGGWQHPAVAATF DPSTLFTFFQSQCIV
Sbjct: 61  PEIDGNRISATGNAVEGGGGNGDQRGIGFVAPGGWQHPAVAATFPDPSTLFTFFQSQCIV 120

Query: 121 TSNTP 125
           +SNTP
Sbjct: 121 SSNTP 125

[Close]

BLAST of HG10001499 vs. ExPASy TrEMBL
Match: A0A6J1D5B7 (uncharacterized protein LOC111017071 OS=Momordica charantia OX=3673 GN=LOC111017071 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 5.5e-20
Identity = 65/91 (71.43%), Postives = 71/91 (78.02%), Query Frame = 0


Query: 1   MENEHKA--RLPKPPTRLQKQAPASLHLDQLSSVSMSSGSTDTCSKAILPLLSPLPLSPQ 60
           ME EHKA  R+PKPPTRLQKQAPASLHLDQ+SS SM+ G  +T SKAILPLLSPLPLSPQ
Sbjct: 16  MEKEHKAKSRIPKPPTRLQKQAPASLHLDQVSSTSMAPGGAETSSKAILPLLSPLPLSPQ 75

Query: 61  PLPEID---GNRIS-ANGNAAGGGGNVDQRG 86
           P PE +    NR+S AN NA  GGG  DQRG
Sbjct: 76  PWPETEENNTNRVSAANENAVDGGG--DQRG 104

[Close]

BLAST of HG10001499 vs. ExPASy TrEMBL
Match: A0A6P3ZH11 (uncharacterized protein LOC107411018 OS=Ziziphus jujuba OX=326968 GN=LOC107411018 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.8e-16
Identity = 64/122 (52.46%), Postives = 80/122 (65.57%), Query Frame = 0


Query: 1   MENEHKARLPKPPTRLQKQAPASLHLDQLSSVSMSSGSTDTCSKAILPLLSPLPLSPQPL 60
           +  + +A+  KPPTRLQK+APASL LDQ+ + S ++ S +  SKAI PLLSPL LSPQPL
Sbjct: 4   INGQKEAKGWKPPTRLQKKAPASLKLDQVPT-SAANDSFNETSKAI-PLLSPLVLSPQPL 63

Query: 61  PEIDGNRISANGNAAGGGGNVDQRGIGFAAPG-GWQHPAVAATFADPSTLFTFFQSQCIV 120
           PE+   R    G AA      D+R      P  GWQHPAV  TF DPS+LF FFQSQC++
Sbjct: 64  PEMLEKR--RFGCAADQHDVEDKRSEAVPLPADGWQHPAVPTTFTDPSSLFAFFQSQCVI 121

Query: 121 TS 122
            +
Sbjct: 124 VN 121

[Close]

BLAST of HG10001499 vs. ExPASy TrEMBL
Match: A0A7J7DYM3 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW02G00441 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 9.0e-15
Identity = 54/116 (46.55%), Postives = 74/116 (63.79%), Query Frame = 0


Query: 4   EHKARLPKPPTRLQKQAPASLHLDQLSSVSMSSGSTDTCSKAILPLLSPLPLSPQPLPEI 63
           ++KAR+ KPPTRLQ+QAPA+LHLD +++   S       +   +PLLSPL +SP PLPE 
Sbjct: 16  KNKARVEKPPTRLQRQAPATLHLDHVTTTINS-----FLAPTAIPLLSPLVVSPPPLPEQ 75

Query: 64  DGNRISANGNAAGGGGNVDQRGIGFAAPGGWQHPAVAATFADPSTLFTFFQSQCIV 120
           +     ANG++  G    +  G      GGWQHPAVA  + +PS +F FFQSQC++
Sbjct: 76  EEFIFPANGDS--GKTTHENVGAPLTMGGGWQHPAVAG-YMEPSAIFAFFQSQCVL 123

[Close]

BLAST of HG10001499 vs. TAIR 10
Match: AT1G07473.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07476.1); Has 22 Blast hits to 22 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 2.2e-05
Identity = 25/54 (46.30%), Postives = 32/54 (59.26%), Query Frame = 0


Query: 6  KARLPKPPTRLQKQAPASLHLDQLSSVSMSSGSTDTCSKAILPLLSPLPLSPQP 60
          K+  P+ PTRLQKQAP +LHL  +        S+D      +PLLSPL +SP P
Sbjct: 10 KSESPRSPTRLQKQAPTALHLGLVPENPFLQQSSDVVGTTAIPLLSPLFVSPSP 63

[Close]

BLAST of HG10001499 vs. TAIR 10
Match: AT1G07476.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07473.1); Has 23 Blast hits to 23 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 40.8 bits (94), Expect = 9.3e-04
Identity = 24/52 (46.15%), Postives = 34/52 (65.38%), Query Frame = 0


Query: 6   KARLPKPPTRLQKQAPASLHLDQLSSVSMSSGSTDTCSKAILPLLSPLPLSP 58
           K+  P+ PTRLQ+QAPA+L+L ++        S D  + A +PLLSPL +SP
Sbjct: 53  KSESPRLPTRLQRQAPAALNLGRVPENPFLQQSGDEVAGAPIPLLSPLFVSP 104

The following BLAST results are available for this feature:

BLAST of HG10001499 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902307.1	1.0e-57	96.80	uncharacterized protein LOC120088941 [Benincasa hispida]	[more]
XP_011657141.1	2.7e-53	90.40	uncharacterized protein LOC105435808 [Cucumis sativus] >XP_031742438.1 uncharact...	[more]
KAA0061869.1	8.6e-52	90.40	uncharacterized protein E6C27_scaffold89G001110 [Cucumis melo var. makuwa] >TYK1...	[more]
KAG6605440.1	3.5e-45	81.45	hypothetical protein SDJN03_02757, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6570684.1	4.3e-43	74.19	hypothetical protein SDJN03_29599, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of HG10001499 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10001499 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBQ7	1.3e-53	90.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188670 PE=4 SV=1	[more]
A0A5A7V856	4.2e-52	90.40	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1D5B7	5.5e-20	71.43	uncharacterized protein LOC111017071 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A6P3ZH11	2.8e-16	52.46	uncharacterized protein LOC107411018 OS=Ziziphus jujuba OX=326968 GN=LOC10741101...	[more]
A0A7J7DYM3	9.0e-15	46.55	Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW02G00441 ...	[more]

BLAST of HG10001499 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07473.1	2.2e-05	46.30	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G07476.1	9.3e-04	46.15	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	PANTHER	PTHR33912:SF5	F22G5.17	coord: 4..122
IPR040381	Uncharacterized protein At4g14450-like	PANTHER	PTHR33912	OS01G0939400 PROTEIN	coord: 4..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10001499.1	HG10001499.1	mRNA