HG10001454 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10001454
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	THO complex subunit 4A-like
Location	Chr09: 17283332 .. 17284918 (+)
RNA-Seq Expression	HG10001454
Synteny	HG10001454

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCTCCTTTGGATATGAGTCTTGATGATATCATAAAGAACAACAAAAAATCCAGATCCGGTAATTCTAGAGGTCGCGGAAGAGGTTCTGGACCCGGTCCCGTCCGTCGATTTCCCAATCGCGCCGCTAATCGCACACCTTATTCTGCTCCCAAGGTATGGTTTCGAGTTTTTTGGTAGCTTCGAGGTTTATGACTTTTTTTTCCTGATTTGCACCATTTGAATCCTGGATTGAACTTTTGTTTTGATTGCTCTTGATTTGTTGTATTTGGCGTTAGGCGCCGGAGACGACGTGGCAGCACGATATGTTCGCCGATTCGGGTGCTGGATTCCCTGTGCAAGCTGGGCGAGCCTCTGCTATTCAGACTGGGACCAAGCTTTACATATCTAATTTGGATTACGGTGTTTCTAATGAAGATATTAAGGTATTTATACCTCTCGGCGTATGAGTAAAACGAGAAGAGAAATTTCCTTTTTTGTTTGCTTTTGTTGACAGTGACGGTGTTTGCAGGAACTTTTTTCTGAAGTTGGTGAGATGAAACGCTACGGAATTCACTATGACAAGAGTGGGAGATCTAAGGTAGCTTTACGAGGACTGACATTAAATACTGGTTGTTGTGCATTCTCTACTTTTTGGTCGAAGTTTAGAAATCCTCTTCTCTATAGGGAACCGCAGAAGTAGTTTTCTCACGACGACTAGATGCTGTTGCGGCCGTCAAGAAGTACAACAACGTTCAGCTTGATGGAAAACCAATGAAGATAGAGATCGTTGGAACTAATATTTCCACACCTGCTGTTGGTCCTATCGCTGCTGTGAACCCTTTCGAAAATTTAAATGGGGCTCCAAGAAGGTATAGATCCCATTTTGTTTTCATGCCAAATTGTTGAAAATAGAACACGAATTTGTTTAAAATTGGATGGAACAATTAATTACACCACTATAATGTAACAAAGTAAATCATGAATTGTAAGTCGTGTTTGGATGTCACGTGATGTGATATTAGCTGTTTAGTTTTTTTTTAGTCTATTTTGTTATAACTGTTAAAGTTTCTTCCCCTTGTATTGGAAAGTTTTATTTCTGCTTATAAAGGATTTCTATGTGAGTCTGTTCACAGGTGCTATAGTAGTGAACTTATTGTGTATGCATTATGGTATATTTTTGGTGGTAGTATGCTGTTGTATGTTTTATCTGAGAAATCTACCTCTGATGCAGACAAATATGCAAATATGCATTTGCACTTGAAACACTTTTTTAAAGATTTGTATTTGTTGTAAGACTATTGAAGCCATCTTTTTTCTTTTGTAGTATGCCCTTGTATTCAAATCTTCTTATTTTGCACTCAGTTTGGCTTCGTTGACATTCATTTTATACAATCAGTGGTACTACTACTATCTATAACATAATGACATTCCTTTTCATATGGAAACAGGCAGCAAGGTAGGGGTGGTCCACCATCACGTCAACGTGGTCGTGGTTTTGGAAGGGGGCGTGGCCGAGGAAGAGGTCCAAGTGAAAAAGTATCCGCCGAAGATCTTGATGCTGACTTGGAAAAGTATCATGCTGAGTCTATGCAGATAAATTAG

mRNA sequence

ATGGCCGCTCCTTTGGATATGAGTCTTGATGATATCATAAAGAACAACAAAAAATCCAGATCCGGTAATTCTAGAGGTCGCGGAAGAGGTTCTGGACCCGGTCCCGTCCGTCGATTTCCCAATCGCGCCGCTAATCGCACACCTTATTCTGCTCCCAAGGCGCCGGAGACGACGTGGCAGCACGATATGTTCGCCGATTCGGGTGCTGGATTCCCTGTGCAAGCTGGGCGAGCCTCTGCTATTCAGACTGGGACCAAGCTTTACATATCTAATTTGGATTACGGTGTTTCTAATGAAGATATTAAGGAACTTTTTTCTGAAGTTGGTGAGATGAAACGCTACGGAATTCACTATGACAAGAGTGGGAGATCTAAGGGAACCGCAGAAGTAGTTTTCTCACGACGACTAGATGCTGTTGCGGCCGTCAAGAAGTACAACAACGTTCAGCTTGATGGAAAACCAATGAAGATAGAGATCGTTGGAACTAATATTTCCACACCTGCTGTTGGTCCTATCGCTGCTGTGAACCCTTTCGAAAATTTAAATGGGGCTCCAAGAAGGCAGCAAGGTAGGGGTGGTCCACCATCACGTCAACGTGGTCGTGGTTTTGGAAGGGGGCGTGGCCGAGGAAGAGGTCCAAGTGAAAAAGTATCCGCCGAAGATCTTGATGCTGACTTGGAAAAGTATCATGCTGAGTCTATGCAGATAAATTAG

Coding sequence (CDS)

ATGGCCGCTCCTTTGGATATGAGTCTTGATGATATCATAAAGAACAACAAAAAATCCAGATCCGGTAATTCTAGAGGTCGCGGAAGAGGTTCTGGACCCGGTCCCGTCCGTCGATTTCCCAATCGCGCCGCTAATCGCACACCTTATTCTGCTCCCAAGGCGCCGGAGACGACGTGGCAGCACGATATGTTCGCCGATTCGGGTGCTGGATTCCCTGTGCAAGCTGGGCGAGCCTCTGCTATTCAGACTGGGACCAAGCTTTACATATCTAATTTGGATTACGGTGTTTCTAATGAAGATATTAAGGAACTTTTTTCTGAAGTTGGTGAGATGAAACGCTACGGAATTCACTATGACAAGAGTGGGAGATCTAAGGGAACCGCAGAAGTAGTTTTCTCACGACGACTAGATGCTGTTGCGGCCGTCAAGAAGTACAACAACGTTCAGCTTGATGGAAAACCAATGAAGATAGAGATCGTTGGAACTAATATTTCCACACCTGCTGTTGGTCCTATCGCTGCTGTGAACCCTTTCGAAAATTTAAATGGGGCTCCAAGAAGGCAGCAAGGTAGGGGTGGTCCACCATCACGTCAACGTGGTCGTGGTTTTGGAAGGGGGCGTGGCCGAGGAAGAGGTCCAAGTGAAAAAGTATCCGCCGAAGATCTTGATGCTGACTTGGAAAAGTATCATGCTGAGTCTATGCAGATAAATTAG

Protein sequence

MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADSGAGFPVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGEMKRYGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPIAAVNPFENLNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN

Homology

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BLAST of HG10001454 vs. NCBI nr
Match: XP_038901991.1 (THO complex subunit 4A-like [Benincasa hispida])

HSP 1 Score: 451.4 bits (1160), Expect = 4.7e-123
Identity = 230/237 (97.05%), Postives = 232/237 (97.89%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60

Query: 61  HDMFADSGAGFPVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGEMKRYGIHYDK 120
           HDMFAD G+GF  Q GRASAIQTGTKLYISNLDYGVSNEDIKELFSEVG+MKRYGIHYDK
Sbjct: 61  HDMFADPGSGFAGQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPIAAVNPFEN 180
           SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGP AAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180

Query: 181 LNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 238
           LNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
Sbjct: 181 LNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 237

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BLAST of HG10001454 vs. NCBI nr
Match: XP_004143092.1 (THO complex subunit 4A [Cucumis sativus] >KGN47175.1 hypothetical protein Csa_020836 [Cucumis sativus])

HSP 1 Score: 444.9 bits (1143), Expect = 4.4e-121
Identity = 227/237 (95.78%), Postives = 230/237 (97.05%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60

Query: 61  HDMFADSGAGFPVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGEMKRYGIHYDK 120
           HDMFAD  +GF VQ GRASAIQTGTKLYISNLDYGVSNEDIKELFSEVG+MKR+GIHYDK
Sbjct: 61  HDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPIAAVNPFEN 180
           SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGP AAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180

Query: 181 LNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 238
            NGAPRRQQGRGGPPSRQRG GFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
Sbjct: 181 SNGAPRRQQGRGGPPSRQRGHGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 237

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BLAST of HG10001454 vs. NCBI nr
Match: XP_008448384.1 (PREDICTED: THO complex subunit 4A-like isoform X1 [Cucumis melo] >XP_008448386.1 PREDICTED: THO complex subunit 4A-like isoform X1 [Cucumis melo] >XP_008448387.1 PREDICTED: THO complex subunit 4A-like isoform X1 [Cucumis melo] >XP_016900540.1 PREDICTED: THO complex subunit 4A-like isoform X1 [Cucumis melo])

HSP 1 Score: 442.2 bits (1136), Expect = 2.8e-120
Identity = 226/237 (95.36%), Postives = 230/237 (97.05%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAA+RTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAASRTPYSAPKAPETTWQ 60

Query: 61  HDMFADSGAGFPVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGEMKRYGIHYDK 120
           HDMFAD  +GF  Q GRASAIQTGTKLYISNLDYGVSNEDIKELFSEVG+MKR+GIHYDK
Sbjct: 61  HDMFADPSSGFIGQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPIAAVNPFEN 180
           SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGP AAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180

Query: 181 LNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 238
            NGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
Sbjct: 181 SNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 237

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BLAST of HG10001454 vs. NCBI nr
Match: KAG7035419.1 (THO complex subunit 4A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 428.7 bits (1101), Expect = 3.2e-116
Identity = 223/238 (93.70%), Postives = 226/238 (94.96%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNNKKSRSG SRGRGRGSGPGPVRR PNRAANRTPYSAPKAPETTWQ
Sbjct: 9   MAAPLDMSLDDIIKNNKKSRSGISRGRGRGSGPGPVRRIPNRAANRTPYSAPKAPETTWQ 68

Query: 61  HDMFADSGAGFPVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGEMKRYGIHYDK 120
           HDMF D GAGFPVQAGRAS+IQTGTKLYISNLDYGVSNEDIKELFSEVG+MKRYGIHYDK
Sbjct: 69  HDMFVDQGAGFPVQAGRASSIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK 128

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPIAAVNPFEN 180
           SGRSKGTAEVVFSRR DA AAVKKYNNVQLDGKPMKIEIVGTNI+T AVGP AAVNPFEN
Sbjct: 129 SGRSKGTAEVVFSRRGDAAAAVKKYNNVQLDGKPMKIEIVGTNIATHAVGPPAAVNPFEN 188

Query: 181 LNGAPRRQQGRGGPPSRQR-GRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 238
            NGAPRRQQGRGG PSRQR GRG GRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
Sbjct: 189 FNGAPRRQQGRGGLPSRQRGGRGSGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 246

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BLAST of HG10001454 vs. NCBI nr
Match: XP_022947495.1 (THO complex subunit 4A-like [Cucurbita moschata])

HSP 1 Score: 428.7 bits (1101), Expect = 3.2e-116
Identity = 223/238 (93.70%), Postives = 226/238 (94.96%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNNKKSRSG SRGRGRGSGPGPVRR PNRAANRTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGISRGRGRGSGPGPVRRIPNRAANRTPYSAPKAPETTWQ 60

Query: 61  HDMFADSGAGFPVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGEMKRYGIHYDK 120
           HDMF D GAGFPVQAGRAS+IQTGTKLYISNLDYGVSNEDIKELFSEVG+MKRYGIHYDK
Sbjct: 61  HDMFVDQGAGFPVQAGRASSIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPIAAVNPFEN 180
           SGRSKGTAEVVFSRR DA AAVKKYNNVQLDGKPMKIEIVGTNI+T AVGP AAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRGDAAAAVKKYNNVQLDGKPMKIEIVGTNIATHAVGPPAAVNPFEN 180

Query: 181 LNGAPRRQQGRGGPPSRQR-GRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 238
            NGAPRRQQGRGG PSRQR GRG GRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
Sbjct: 181 FNGAPRRQQGRGGLPSRQRGGRGSGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 238

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BLAST of HG10001454 vs. ExPASy Swiss-Prot
Match: Q8L773 (THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 1.4e-69
Identity = 158/251 (62.95%), Postives = 188/251 (74.90%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPE 60
           M+  LDMSLDD+I  N+KSR  +G +RG G GSGPGP RR  PNR + R+ PY + KAPE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPE 60

Query: 61  TTWQHDMFADSGAGFPVQAGRASA-IQTGTKLYISNLDYGVSNEDIKELFSEVGEMKRYG 120
           +TW HDMF+D       ++GR+SA I+TGTKLYISNLDYGV NEDIKELF+EVGE+KRY 
Sbjct: 61  STWGHDMFSDRSEDH--RSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 IHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPIAAV 180
           +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T A       
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPA 180

Query: 181 NPFENLNGAP-RRQQGRGGPPSRQRG--------RGFGRGRGRGRGPSEKVSAEDLDADL 238
           N   N NGAP R  QGRGG   +QRG         G GRGR  G+GP+EK+SAEDLDADL
Sbjct: 181 N--GNSNGAPWRGGQGRGG---QQRGGGRGGGGRGGGGRGRRPGKGPAEKISAEDLDADL 240

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BLAST of HG10001454 vs. ExPASy Swiss-Prot
Match: Q8L719 (THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 6.2e-62
Identity = 158/290 (54.48%), Postives = 180/290 (62.07%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRG-----------RGRGSGPGPVRRFPNRAANRT-P 60
           M+  LDMSLDDIIK+N+K      RG            G GS  GP RRF NR   RT P
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 61  YSAP----KAPETTWQHDMFADS-------GAGFPVQAGRASAIQTGTKLYISNLDYGVS 120
           YS P    +A +  WQ+D+FA         G       G  S+I+TGTKLYISNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 121 NEDIKELFSEVGEMKRYGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKI 180
           NEDIKELFSEVG++KRYGIHYD+SGRSKGTAEVVFSRR DA+AAVK+YNNVQLDGK MKI
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 181 EIVGTNISTPAVGPIAAVN-PF----------ENLNG-------APRRQQGRGGPPSRQR 236
           EIVGTN+S PA+  +A    PF          EN NG          R +GRGG   R R
Sbjct: 181 EIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGRGGFMGRPR 240

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BLAST of HG10001454 vs. ExPASy Swiss-Prot
Match: Q6NQ72 (THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.0e-43
Identity = 127/293 (43.34%), Postives = 161/293 (54.95%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGN---SRGRGR-----GSGPGPVRRFPNRAANRTPYS-- 60
           M+  L+M+LD+I+K  K +RSG    SRGRGR     G G GP RR P  A N  P S  
Sbjct: 1   MSGALNMTLDEIVKRGKTARSGGRGISRGRGRGRGGGGRGAGPARRGP-LAVNARPSSFT 60

Query: 61  ----APKAPETTWQHDMFADSGAGFPVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFS 120
                 +     WQ  +F D      ++A  AS ++ GT+L+++NLD GV+NEDI+ELFS
Sbjct: 61  INKPVRRVRSLPWQSGLFEDG-----LRAAGASGVEVGTRLHVTNLDQGVTNEDIRELFS 120

Query: 121 EVGEMKRYGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNIST 180
           E+GE++RY IHYDK+GR  GTAEVV+ RR DA  A+KKYNNV LDG+PM++EI+G N S+
Sbjct: 121 EIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNSS 180

Query: 181 PAV---------------------------------------GPIAAVN---PFENLNGA 235
            A                                        GP   V+   P  N  G 
Sbjct: 181 EAPLSGRVNVNVTGLNGRLKRTVVIQQGGGGRGRVRGGRGGRGPAPTVSRRLPIHNQQGG 240

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BLAST of HG10001454 vs. ExPASy Swiss-Prot
Match: Q94EH8 (THO complex subunit 4C OS=Arabidopsis thaliana OX=3702 GN=ALY3 PE=1 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.6e-41
Identity = 126/305 (41.31%), Postives = 167/305 (54.75%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSR----------GRGRGS---------GPGPVRRFPN 60
           M+  L+M+LD+I+K +K  RS  +R          GRGRG          G GPVRR P 
Sbjct: 1   MSDALNMTLDEIVKKSKSERSAAARSGGKGVSRKSGRGRGGPNGVVGGGRGGGPVRRGP- 60

Query: 61  RAANRTPYS-------APKAPETTW--QHDMFADSGAGFPVQAGRASAIQTGTKLYISNL 120
            A N  P S       A +     W  Q+D++ ++     ++A   S ++ GT +YI+NL
Sbjct: 61  LAVNTRPSSSFSINKLARRKRSLPWQNQNDLYEET-----LRAVGVSGVEVGTTVYITNL 120

Query: 121 DYGVSNEDIKELFSEVGEMKRYGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDG 180
           D GV+NEDI+EL++E+GE+KRY IHYDK+GR  G+AEVV+ RR DA+ A++KYNNV LDG
Sbjct: 121 DQGVTNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMRKYNNVLLDG 180

Query: 181 KPMKIEIVGTNISTPAVGPIAAVNPFENLNGAPRRQ-------------QGRGGPPSRQR 238
           +PMK+EI+G N  +    P+AA      LNG  +R              +GRG  PS +R
Sbjct: 181 RPMKLEILGGNTES---APVAARVNVTGLNGRMKRSVFIGQGVRGGRVGRGRGSGPSGRR 240

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BLAST of HG10001454 vs. ExPASy Swiss-Prot
Match: Q3T0I4 (THO complex subunit 4 OS=Bos taurus OX=9913 GN=ALYREF PE=2 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 7.9e-41
Identity = 118/265 (44.53%), Postives = 151/265 (56.98%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRG-------------------SGPGPVRRFPN 60
           MA  +DMSLDDIIK N+  R G   GRGRG                    G GP+R  P 
Sbjct: 1   MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGGAQAAARVNRGGGPIRNRPA 60

Query: 61  RA--------ANR-TPYSAPKAPETTWQHDMFADSGAGFPVQAGRASAIQTGTKLYISNL 120
            A         NR  PYS PK     WQHD+F DSG       G  + ++TG KL +SNL
Sbjct: 61  IARGAAGGGGRNRPAPYSRPKQLPDKWQHDLF-DSG------FGGGAGVETGGKLLVSNL 120

Query: 121 DYGVSNEDIKELFSEVGEMKRYGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDG 180
           D+GVS+ DI+ELF+E G +K+  +HYD+SGRS GTA+V F R+ DA+ A+K+YN V LDG
Sbjct: 121 DFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG 180

Query: 181 KPMKIEIVGTNISTPAVGPIAAVNPFENLNGAPRRQQGR----GGPPSRQRGRGFGRGRG 232
           +PM I++V + I T    P  +VN      G   R +G     GG  +R+  RG  RGRG
Sbjct: 181 RPMNIQLVTSQIDTQR-RPAQSVN-----RGGMTRNRGSGGFGGGGGTRRGTRGGSRGRG 240

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BLAST of HG10001454 vs. ExPASy TrEMBL
Match: A0A0A0KBU2 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G193610 PE=4 SV=1)

HSP 1 Score: 444.9 bits (1143), Expect = 2.1e-121
Identity = 227/237 (95.78%), Postives = 230/237 (97.05%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60

Query: 61  HDMFADSGAGFPVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGEMKRYGIHYDK 120
           HDMFAD  +GF VQ GRASAIQTGTKLYISNLDYGVSNEDIKELFSEVG+MKR+GIHYDK
Sbjct: 61  HDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPIAAVNPFEN 180
           SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGP AAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180

Query: 181 LNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 238
            NGAPRRQQGRGGPPSRQRG GFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
Sbjct: 181 SNGAPRRQQGRGGPPSRQRGHGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 237

[Close]

BLAST of HG10001454 vs. ExPASy TrEMBL
Match: A0A1S3BK70 (THO complex subunit 4A-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490589 PE=4 SV=1)

HSP 1 Score: 442.2 bits (1136), Expect = 1.4e-120
Identity = 226/237 (95.36%), Postives = 230/237 (97.05%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAA+RTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAASRTPYSAPKAPETTWQ 60

Query: 61  HDMFADSGAGFPVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGEMKRYGIHYDK 120
           HDMFAD  +GF  Q GRASAIQTGTKLYISNLDYGVSNEDIKELFSEVG+MKR+GIHYDK
Sbjct: 61  HDMFADPSSGFIGQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPIAAVNPFEN 180
           SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGP AAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180

Query: 181 LNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 238
            NGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
Sbjct: 181 SNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 237

[Close]

BLAST of HG10001454 vs. ExPASy TrEMBL
Match: A0A6J1G721 (THO complex subunit 4A-like OS=Cucurbita moschata OX=3662 GN=LOC111451345 PE=4 SV=1)

HSP 1 Score: 428.7 bits (1101), Expect = 1.6e-116
Identity = 223/238 (93.70%), Postives = 226/238 (94.96%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNNKKSRSG SRGRGRGSGPGPVRR PNRAANRTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGISRGRGRGSGPGPVRRIPNRAANRTPYSAPKAPETTWQ 60

Query: 61  HDMFADSGAGFPVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGEMKRYGIHYDK 120
           HDMF D GAGFPVQAGRAS+IQTGTKLYISNLDYGVSNEDIKELFSEVG+MKRYGIHYDK
Sbjct: 61  HDMFVDQGAGFPVQAGRASSIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPIAAVNPFEN 180
           SGRSKGTAEVVFSRR DA AAVKKYNNVQLDGKPMKIEIVGTNI+T AVGP AAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRGDAAAAVKKYNNVQLDGKPMKIEIVGTNIATHAVGPPAAVNPFEN 180

Query: 181 LNGAPRRQQGRGGPPSRQR-GRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 238
            NGAPRRQQGRGG PSRQR GRG GRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
Sbjct: 181 FNGAPRRQQGRGGLPSRQRGGRGSGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 238

[Close]

BLAST of HG10001454 vs. ExPASy TrEMBL
Match: A0A6J1L1M6 (THO complex subunit 4A-like OS=Cucurbita maxima OX=3661 GN=LOC111499593 PE=4 SV=1)

HSP 1 Score: 427.2 bits (1097), Expect = 4.6e-116
Identity = 222/238 (93.28%), Postives = 225/238 (94.54%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNNKKSRSG SRGRGRGSGPGPVRR PNRAANRTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGISRGRGRGSGPGPVRRIPNRAANRTPYSAPKAPETTWQ 60

Query: 61  HDMFADSGAGFPVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGEMKRYGIHYDK 120
           HDMF D GAGFPVQAGRAS+IQTGTKLYISNLDYGVSNEDIKELFSEVG+MKRYGIHYDK
Sbjct: 61  HDMFVDQGAGFPVQAGRASSIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPIAAVNPFEN 180
           SGRSKGTAEVVFSRR DA AAVKKYNNVQLDGKPMKIEIVGTNI+T AVGP AAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRGDAAAAVKKYNNVQLDGKPMKIEIVGTNIATHAVGPPAAVNPFEN 180

Query: 181 LNGAPRRQQGRGGPPSRQR-GRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 238
            NG PRRQQGRGG PSRQR GRG GRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
Sbjct: 181 FNGVPRRQQGRGGLPSRQRGGRGSGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 238

[Close]

BLAST of HG10001454 vs. ExPASy TrEMBL
Match: A0A6J1D4W8 (THO complex subunit 4A-like OS=Momordica charantia OX=3673 GN=LOC111017043 PE=4 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 6.8e-112
Identity = 218/243 (89.71%), Postives = 223/243 (91.77%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSR-GRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTW 60
           MAAPLDMSLDDIIKNNKKSRSGNSR GRGR SGPGPVRRFPNRAANRTPY+APKAPET W
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGGRGRPSGPGPVRRFPNRAANRTPYAAPKAPETAW 60

Query: 61  QHDMFADSGAGFPVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGEMKRYGIHYD 120
           QHDMF D  +GF VQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVG+MK Y IHYD
Sbjct: 61  QHDMFIDQTSGFAVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKHYSIHYD 120

Query: 121 KSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPIAAVNPFE 180
           KSGRSKGTAEVVFSRR+DAVAAVKKYNNVQLDGKPMKIEIVGTNI+TPA  P AAV PFE
Sbjct: 121 KSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAAVPTAAVAPFE 180

Query: 181 NLNGAPRRQQGRGGPPSRQR-----GRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESM 238
           NLNG PRRQQGRGG PSRQR     GRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESM
Sbjct: 181 NLNGFPRRQQGRGGLPSRQRGGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESM 240

[Close]

BLAST of HG10001454 vs. TAIR 10
Match: AT5G59950.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 264.2 bits (674), Expect = 9.9e-71
Identity = 158/251 (62.95%), Postives = 188/251 (74.90%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPE 60
           M+  LDMSLDD+I  N+KSR  +G +RG G GSGPGP RR  PNR + R+ PY + KAPE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPE 60

Query: 61  TTWQHDMFADSGAGFPVQAGRASA-IQTGTKLYISNLDYGVSNEDIKELFSEVGEMKRYG 120
           +TW HDMF+D       ++GR+SA I+TGTKLYISNLDYGV NEDIKELF+EVGE+KRY 
Sbjct: 61  STWGHDMFSDRSEDH--RSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 IHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPIAAV 180
           +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T A       
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPA 180

Query: 181 NPFENLNGAP-RRQQGRGGPPSRQRG--------RGFGRGRGRGRGPSEKVSAEDLDADL 238
           N   N NGAP R  QGRGG   +QRG         G GRGR  G+GP+EK+SAEDLDADL
Sbjct: 181 N--GNSNGAPWRGGQGRGG---QQRGGGRGGGGRGGGGRGRRPGKGPAEKISAEDLDADL 240

[Close]

BLAST of HG10001454 vs. TAIR 10
Match: AT5G59950.5 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 263.8 bits (673), Expect = 1.3e-70
Identity = 158/252 (62.70%), Postives = 188/252 (74.60%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPE 60
           M+  LDMSLDD+I  N+KSR  +G +RG G GSGPGP RR  PNR + R+ PY + KAPE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPE 60

Query: 61  TTWQHDMFADSGAGFPVQAGRASA-IQTGTKLYISNLDYGVSNEDIKELFSEVGEMKRYG 120
           +TW HDMF+D       ++GR+SA I+TGTKLYISNLDYGV NEDIKELF+EVGE+KRY 
Sbjct: 61  STWGHDMFSDRSEDH--RSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 IHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPIAAV 180
           +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T A       
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPA 180

Query: 181 NPFENLNGAP--RRQQGRGGPPSRQRG--------RGFGRGRGRGRGPSEKVSAEDLDAD 238
           N   N NGAP  R  QGRGG   +QRG         G GRGR  G+GP+EK+SAEDLDAD
Sbjct: 181 N--GNSNGAPWSRGGQGRGG---QQRGGGRGGGGRGGGGRGRRPGKGPAEKISAEDLDAD 240

[Close]

BLAST of HG10001454 vs. TAIR 10
Match: AT5G59950.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 258.1 bits (658), Expect = 7.1e-69
Identity = 157/251 (62.55%), Postives = 187/251 (74.50%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPE 60
           M+  LDMSLDD+I  N+KSR  +G +RG G GSGPGP RR  PNR + R+ PY +  APE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQS--APE 60

Query: 61  TTWQHDMFADSGAGFPVQAGRASA-IQTGTKLYISNLDYGVSNEDIKELFSEVGEMKRYG 120
           +TW HDMF+D       ++GR+SA I+TGTKLYISNLDYGV NEDIKELF+EVGE+KRY 
Sbjct: 61  STWGHDMFSDRSEDH--RSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 IHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPIAAV 180
           +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T A       
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPA 180

Query: 181 NPFENLNGAP-RRQQGRGGPPSRQRG--------RGFGRGRGRGRGPSEKVSAEDLDADL 238
           N   N NGAP R  QGRGG   +QRG         G GRGR  G+GP+EK+SAEDLDADL
Sbjct: 181 N--GNSNGAPWRGGQGRGG---QQRGGGRGGGGRGGGGRGRRPGKGPAEKISAEDLDADL 240

[Close]

BLAST of HG10001454 vs. TAIR 10
Match: AT5G02530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 238.8 bits (608), Expect = 4.4e-63
Identity = 158/290 (54.48%), Postives = 180/290 (62.07%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRG-----------RGRGSGPGPVRRFPNRAANRT-P 60
           M+  LDMSLDDIIK+N+K      RG            G GS  GP RRF NR   RT P
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 61  YSAP----KAPETTWQHDMFADS-------GAGFPVQAGRASAIQTGTKLYISNLDYGVS 120
           YS P    +A +  WQ+D+FA         G       G  S+I+TGTKLYISNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 121 NEDIKELFSEVGEMKRYGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKI 180
           NEDIKELFSEVG++KRYGIHYD+SGRSKGTAEVVFSRR DA+AAVK+YNNVQLDGK MKI
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 181 EIVGTNISTPAVGPIAAVN-PF----------ENLNG-------APRRQQGRGGPPSRQR 236
           EIVGTN+S PA+  +A    PF          EN NG          R +GRGG   R R
Sbjct: 181 EIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGRGGFMGRPR 240

[Close]

BLAST of HG10001454 vs. TAIR 10
Match: AT5G02530.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 237.3 bits (604), Expect = 1.3e-62
Identity = 157/288 (54.51%), Postives = 179/288 (62.15%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRG-----------RGRGSGPGPVRRFPNRAANRT-P 60
           M+  LDMSLDDIIK+N+K      RG            G GS  GP RRF NR   RT P
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 61  YSAP----KAPETTWQHDMFADS-------GAGFPVQAGRASAIQTGTKLYISNLDYGVS 120
           YS P    +A +  WQ+D+FA         G       G  S+I+TGTKLYISNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 121 NEDIKELFSEVGEMKRYGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKI 180
           NEDIKELFSEVG++KRYGIHYD+SGRSKGTAEVVFSRR DA+AAVK+YNNVQLDGK MKI
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 181 EIVGTNISTPAVGPIAAVN-PF----------ENLNGAPRRQ-----QGRGGPPSRQRGR 236
           EIVGTN+S PA+  +A    PF          EN NG          +GRGG   R RG 
Sbjct: 181 EIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGGFMGRPRGG 240

The following BLAST results are available for this feature:

BLAST of HG10001454 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038901991.1	4.7e-123	97.05	THO complex subunit 4A-like [Benincasa hispida]	[more]
XP_004143092.1	4.4e-121	95.78	THO complex subunit 4A [Cucumis sativus] >KGN47175.1 hypothetical protein Csa_02...	[more]
XP_008448384.1	2.8e-120	95.36	PREDICTED: THO complex subunit 4A-like isoform X1 [Cucumis melo] >XP_008448386.1...	[more]
KAG7035419.1	3.2e-116	93.70	THO complex subunit 4A, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022947495.1	3.2e-116	93.70	THO complex subunit 4A-like [Cucurbita moschata]	[more]

BLAST of HG10001454 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L773	1.4e-69	62.95	THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1	[more]
Q8L719	6.2e-62	54.48	THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1	[more]
Q6NQ72	1.0e-43	43.34	THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1	[more]
Q94EH8	1.6e-41	41.31	THO complex subunit 4C OS=Arabidopsis thaliana OX=3702 GN=ALY3 PE=1 SV=1	[more]
Q3T0I4	7.9e-41	44.53	THO complex subunit 4 OS=Bos taurus OX=9913 GN=ALYREF PE=2 SV=1	[more]

BLAST of HG10001454 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBU2	2.1e-121	95.78	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G193610 PE=4 SV...	[more]
A0A1S3BK70	1.4e-120	95.36	THO complex subunit 4A-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490589 P...	[more]
A0A6J1G721	1.6e-116	93.70	THO complex subunit 4A-like OS=Cucurbita moschata OX=3662 GN=LOC111451345 PE=4 S...	[more]
A0A6J1L1M6	4.6e-116	93.28	THO complex subunit 4A-like OS=Cucurbita maxima OX=3661 GN=LOC111499593 PE=4 SV=...	[more]
A0A6J1D4W8	6.8e-112	89.71	THO complex subunit 4A-like OS=Momordica charantia OX=3673 GN=LOC111017043 PE=4 ...	[more]

BLAST of HG10001454 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59950.1	9.9e-71	62.95	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G59950.5	1.3e-70	62.70	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G59950.3	7.1e-69	62.55	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G02530.1	4.4e-63	54.48	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G02530.2	1.3e-62	54.51	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 86..158 e-value: 1.5E-18 score: 77.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 87..155 e-value: 1.4E-14 score: 53.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 85..162 score: 16.039637
IPR025715	Chromatin target of PRMT1 protein, C-terminal	SMART	SM01218	FoP_duplication_2	coord: 165..237 e-value: 2.5E-11 score: 53.6
IPR025715	Chromatin target of PRMT1 protein, C-terminal	PFAM	PF13865	FoP_duplication	coord: 178..232 e-value: 1.8E-9 score: 38.1
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 73..219 e-value: 6.1E-26 score: 93.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 179..237
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 208..230
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..57
None	No IPR available	PANTHER	PTHR19965	RNA AND EXPORT FACTOR BINDING PROTEIN	coord: 1..236
None	No IPR available	PANTHER	PTHR19965:SF74	CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED	coord: 1..236
None	No IPR available	CDD	cd12680	RRM_THOC4	coord: 85..159 e-value: 3.61222E-47 score: 148.942
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 20..159

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10001454.1	HG10001454.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006406	mRNA export from nucleus
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding