HG10001449 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10001449
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Histone superfamily protein
Location	Chr09: 17259732 .. 17260052 (+)
RNA-Seq Expression	HG10001449
Synteny	HG10001449

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGTTAGAAGTAATAGATGCCATTGCAAGGATTAAAAGACTAGGACTGATCCAAGCAGCTTCCAATTTAGATAACATTATGGTTAGAGAACTGTGGAGAACATTGAAGGCATTACAAAGCATACAATTCAGCATGAAGATTTTCCTTGAAAACGTGATTCGCGAAACTGTTACCCACCGAGCACATCAGGAGAAGGACAGTGACTGCCATGGATGCGGCGTACGACAGGGAAGAACTCTGTATGGTTTCGGGGTAAAGATGAATTTGAAGAATGATTTCCTTTCCTGGGGAGAGATGATCGGGCCAAGAAATCCGTGA

mRNA sequence

ATGCAGTTAGAAGTAATAGATGCCATTGCAAGGATTAAAAGACTAGGACTGATCCAAGCAGCTTCCAATTTAGATAACATTATGGTTAGAGAACTGTGGAGAACATTGAAGGCATTACAAAGCATACAATTCAGCATGAAGATTTTCCTTGAAAACGTGATTCGCGAAACTGTTACCCACCGAGCACATCAGGAGAAGGACAGTGACTGCCATGGATGCGGCGTACGACAGGGAAGAACTCTGTATGGTTTCGGGGTAAAGATGAATTTGAAGAATGATTTCCTTTCCTGGGGAGAGATGATCGGGCCAAGAAATCCGTGA

Coding sequence (CDS)

ATGCAGTTAGAAGTAATAGATGCCATTGCAAGGATTAAAAGACTAGGACTGATCCAAGCAGCTTCCAATTTAGATAACATTATGGTTAGAGAACTGTGGAGAACATTGAAGGCATTACAAAGCATACAATTCAGCATGAAGATTTTCCTTGAAAACGTGATTCGCGAAACTGTTACCCACCGAGCACATCAGGAGAAGGACAGTGACTGCCATGGATGCGGCGTACGACAGGGAAGAACTCTGTATGGTTTCGGGGTAAAGATGAATTTGAAGAATGATTTCCTTTCCTGGGGAGAGATGATCGGGCCAAGAAATCCGTGA

Protein sequence

MQLEVIDAIARIKRLGLIQAASNLDNIMVRELWRTLKALQSIQFSMKIFLENVIRETVTHRAHQEKDSDCHGCGVRQGRTLYGFGVKMNLKNDFLSWGEMIGPRNP

Homology

[Close]

BLAST of HG10001449 vs. TAIR 10
Match: AT1G07660.1 (Histone superfamily protein )

HSP 1 Score: 42.7 bits (99), Expect = 2.1e-04
Identity = 23/44 (52.27%), Postives = 28/44 (63.64%), Query Frame = 0


Query: 46  MKIFLENVIRETVTHRAHQEKDS----DCHGCGVRQGRTLYGFG 86
           +KIFLENVIR+ VT+  H  + +    D      RQGRTLYGFG
Sbjct: 59  LKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102

[Close]

BLAST of HG10001449 vs. TAIR 10
Match: AT1G07820.1 (Histone superfamily protein )

HSP 1 Score: 42.7 bits (99), Expect = 2.1e-04
Identity = 23/44 (52.27%), Postives = 28/44 (63.64%), Query Frame = 0


Query: 46  MKIFLENVIRETVTHRAHQEKDS----DCHGCGVRQGRTLYGFG 86
           +KIFLENVIR+ VT+  H  + +    D      RQGRTLYGFG
Sbjct: 59  LKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102

[Close]

BLAST of HG10001449 vs. TAIR 10
Match: AT1G07820.2 (Histone superfamily protein )

HSP 1 Score: 42.7 bits (99), Expect = 2.1e-04
Identity = 23/44 (52.27%), Postives = 28/44 (63.64%), Query Frame = 0


Query: 46  MKIFLENVIRETVTHRAHQEKDS----DCHGCGVRQGRTLYGFG 86
           +KIFLENVIR+ VT+  H  + +    D      RQGRTLYGFG
Sbjct: 59  LKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102

[Close]

BLAST of HG10001449 vs. TAIR 10
Match: AT1G07660.2 (Histone superfamily protein )

HSP 1 Score: 42.7 bits (99), Expect = 2.1e-04
Identity = 23/44 (52.27%), Postives = 28/44 (63.64%), Query Frame = 0


Query: 46 MKIFLENVIRETVTHRAHQEKDS----DCHGCGVRQGRTLYGFG 86
          +KIFLENVIR+ VT+  H  + +    D      RQGRTLYGFG
Sbjct: 42 LKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 85

[Close]

BLAST of HG10001449 vs. TAIR 10
Match: AT2G28740.1 (histone H4 )

HSP 1 Score: 42.7 bits (99), Expect = 2.1e-04
Identity = 23/44 (52.27%), Postives = 28/44 (63.64%), Query Frame = 0


Query: 46  MKIFLENVIRETVTHRAHQEKDS----DCHGCGVRQGRTLYGFG 86
           +KIFLENVIR+ VT+  H  + +    D      RQGRTLYGFG
Sbjct: 59  LKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102

The following BLAST results are available for this feature:

BLAST of HG10001449 vs.


Match Name	E-value	Identity	Description

BLAST of HG10001449 vs.


Match Name	E-value	Identity	Description

BLAST of HG10001449 vs.


Match Name	E-value	Identity	Description

BLAST of HG10001449 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07660.1	2.1e-04	52.27	Histone superfamily protein	[more]
AT1G07820.1	2.1e-04	52.27	Histone superfamily protein	[more]
AT1G07820.2	2.1e-04	52.27	Histone superfamily protein	[more]
AT1G07660.2	2.1e-04	52.27	Histone superfamily protein	[more]
AT2G28740.1	2.1e-04	52.27	histone H4	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10001449.1	HG10001449.1	mRNA