HG10001439 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10001439
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	DNA repair protein RAD51 homolog 4
Location	Chr09: 17178591 .. 17181606 (-)
RNA-Seq Expression	HG10001439
Synteny	HG10001439

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCATTGAAGTCTCTGGAGCAGGTCTGCCCCCTCATCGACTCTAATTTCCAGACATTTTGTGCTTCACACGGCATTTTCACTGGTACTTTCTTCTACGTCCCATTTGATTTTGATTCAATTTCAATATAACCCCATCATTTTGATTTTGCTGCCAGTGGAGGATTTCCTCATCCATGACCTATATGTTTTAGCTGCTTTTGCAGAGCAACAGCCTGCATCAGAGAAATTAAAGCAGGTAAAAACCTTCCTTACAGTTTCCATTCTCTTGTTTATCATTCACTCTACTAACTTCTTAACATCTTGTATGACTGTAACAGGGGATTACCCAAATCCTTTCAATAATTGACGCTGCTGAGCGACAACCATGGATGAACGGTTTGGAGCTTTTGGAAGATGCTCGAGAAAACAAGCATATTCTGTCCACTGATTTTGAAGGGTATTTTCATGAACTTTGAGGCTCAATTACTCACCTGTTTACTTAATTGAGTTTATGCCAGGATTGATATTTTGCTTGGAGGTGGACTACGCGAGGGACAGTTGACTGAAATTGTTGGGCCATCGTCTTCTGGTAAAACTCAGGTAGCTAGTTGGGCATCTTTTGGCTGTGATGAATTTTGCATTTGAAGGTGATTGCTATGATTCTACTTGAACGCCATTTCCAAATTTTAATTATTCAAGCGCTGGATTTATGGTTTAGGAACTTGATTTCTATAATTGGGTTTATTTCTCTCGACCTGTTTAACATGCCGCTGGTACTACATTAGTTTGTGCATGATATGTTTGAATTTTTTATTTATGGCAAGGTTTGTTTGCGAGCTGCTGCAAATGTGGCAACGAACTATAAGGCTAAGGTTTTCTACTTGGACTCAGGCAATTCCTTTTCACCCCAACGCATCTCAGGCTTTGTTAATTGGAAACCCGGAACTGCTTTAGAAAGGGTAACTAAACTACGTGTGGCTGTTGGAACTTTTTGTTCTATAAGATTGGAATTCACCGATCTCTTTGAGTCAAAATTATGGTCTACATTCTAGAAAAAAAGGACAACCACTTCAACTACCCAAAATTATAGGGACAATCGGATACGTCCAGCCATTGTTATATAGAATCTCATAAAATGTCGTCCCAAATTAGCAGTTTGGGGCCGTCAACAACTCAAGCAGTTCGTGGTAGCTGCTATTCAACAAATTCAGAAACTTAAGAAATATGATCTTGTATATATTTGTTTTTTTTTCCTAAACCTTAAGCAATCTCATAATATGATGTGATGGTGTATATCGTTTAAACAGGAGAAGGTTTAAGGATTGAGTACTTGCACACTGCATCCTATTATTTATAACCTCTTCTCATAACGATGGAAACGAACATGCAGGCTAGGCAACGATCGTTTTTGTGCAAGTATTTGGTCCCCTTAAGCCTTTTCTTTTGTTTCAAAGATATACCATTGAGTTATGAGATCGTTGAAGGCTTAGAAAAACAAATATTATACTTTCTTATTTTATTTGGGTTGCTTTATTACTTGCGTTGCTAAGTTGCTAGTCCAGCCAGGACAAACTGCTGGTTTGCCAACGTTTTGACATTCTATATAACAATGGCTGGAGTAAACAGTTGCCTTCATTTCCCTTTCTTGTGACTTATTCTTCTTATATTCTCTATATTTTCATCTTCCAAGTTTGTATTTTTTTTAATGCTTCAACTTTATCTGGCTCTGTCTCTTGAATCCATTTCATAGACTGAACAGAGCATGCTTCAACAAGTAATGAGCAGTATTTCATGTCACTCTGTGTTCAACATTTTTGCAATGTTTGATGTCTTGCATCAGCTGGAATTCAATTTGAGATCCCAGGTTCACATTAACATAATGCATCTTAGGTGGTGAGTTTCACCCGGCGTAATCTTTTTAAATGCCAATTAACAAACTAAAACCATATCAGATGGGCAAAGGGGATCGGAGAGTGCAGTTACTGATTGTAGATTCGATTTCTTCGCTAATTACACCCATCCTTGGTGGAAGTAGTTCACAGGGTACGCATGATTGGATGTGGATGACTGTATATCCTTCATATATGCATGATTTGTCGAGCTTGATTAAAAGCACATGTCCAATTTCTAGGTTCTTCAGACAATACAAAGATATGGCATGTCCTTCAGGAAAGGAATTCTGCGTATTACATATACATGTGCTTAGACAAGATATTTCTGAAGGTTTATTTATGACTGTGATAATTGTTGTTATGTACCAAGTGACTTGATCTTGGACATTTGTTTTCTTTGTTTGTTTTGGTTGTCATTTCAGATTTCATTACACTTTTATGTTCAATTCTATGGTTTTAAAAAATATTTATTAATAAAATGTTGAATTAGATGCATTAATCTGTAAGAACTTCATATGTTAGACTTCTATATACGATAAAAAACAGAAGATTCATGCTTGATGAGTATGTACAGGACATGCTTTGATGATATCTGCTGGAACACTACTGAAGAAAATAGCTCATGAACATAATATAGCAGTACTGGTAATTTCTGACTTGAAGGTTCTTCAGTTACAAATATGGCTTTTTCAACATAAAAAACAATAAAAACTAGAGCAAACATATAATATTGGATTCTAAATTGTACCCAAGCAACAGTAAATGTTACTTAACCCTCTCTGATTTTAAGTAATTTGTCCTAAACTTCTGCTCTCCCTTCTCTTCACTGGATTCCTTTTGTTTCTTCGTGTATAGAACTCCCCGAATTAACATTATGATATTTTTAATTTTAGCTAATAAAGAATGAATTAAATACACTCTTTGTTGACTTCCAGTAACTTGTAATTGTAATGCCGAAGGTAACAAATCACACTGTGGGTGGAGATAGAGGTACTTCAAAACCTGCCCTAGGAGAGAGTTGGAAGAGTGTTCCACACGTGAGGCTTCAGCTTTCCCGAGATGCAGGAAGCAATGTCTGCCAAGCTTCAATATTAAAACACTCATCCATGGTATATTCCTTTATGCACACGCATCATTGA

mRNA sequence

ATGGCGCCATTGAAGTCTCTGGAGCAGGTCTGCCCCCTCATCGACTCTAATTTCCAGACATTTTGTGCTTCACACGGCATTTTCACTGTGGAGGATTTCCTCATCCATGACCTATATGTTTTAGCTGCTTTTGCAGAGCAACAGCCTGCATCAGAGAAATTAAAGCAGGGGATTACCCAAATCCTTTCAATAATTGACGCTGCTGAGCGACAACCATGGATGAACGGTTTGGAGCTTTTGGAAGATGCTCGAGAAAACAAGCATATTCTGTCCACTGATTTTGAAGGGATTGATATTTTGCTTGGAGGTGGACTACGCGAGGGACAGTTGACTGAAATTGTTGGGCCATCGTCTTCTGGTAAAACTCAGGTTTGTTTGCGAGCTGCTGCAAATGTGGCAACGAACTATAAGGCTAAGGTTTTCTACTTGGACTCAGGCAATTCCTTTTCACCCCAACGCATCTCAGGCTTTGTTAATTGGAAACCCGGAACTGCTTTAGAAAGGACTGAACAGAGCATGCTTCAACAAGTAATGAGCAGTATTTCATGTCACTCTGTGTTCAACATTTTTGCAATGTTTGATGTCTTGCATCAGCTGGAATTCAATTTGAGATCCCAGATGGGCAAAGGGGATCGGAGAGTGCAGTTACTGATTGTAGATTCGATTTCTTCGCTAATTACACCCATCCTTGGTGGAAGTAGTTCACAGGGACATGCTTTGATGATATCTGCTGGAACACTACTGAAGAAAATAGCTCATGAACATAATATAGCAGTACTGGTAACAAATCACACTGTGGGTGGAGATAGAGGTACTTCAAAACCTGCCCTAGGAGAGAGTTGGAAGAGTGTTCCACACGTGAGGCTTCAGCTTTCCCGAGATGCAGGAAGCAATGTCTGCCAAGCTTCAATATTAAAACACTCATCCATGGTATATTCCTTTATGCACACGCATCATTGA

Coding sequence (CDS)

ATGGCGCCATTGAAGTCTCTGGAGCAGGTCTGCCCCCTCATCGACTCTAATTTCCAGACATTTTGTGCTTCACACGGCATTTTCACTGTGGAGGATTTCCTCATCCATGACCTATATGTTTTAGCTGCTTTTGCAGAGCAACAGCCTGCATCAGAGAAATTAAAGCAGGGGATTACCCAAATCCTTTCAATAATTGACGCTGCTGAGCGACAACCATGGATGAACGGTTTGGAGCTTTTGGAAGATGCTCGAGAAAACAAGCATATTCTGTCCACTGATTTTGAAGGGATTGATATTTTGCTTGGAGGTGGACTACGCGAGGGACAGTTGACTGAAATTGTTGGGCCATCGTCTTCTGGTAAAACTCAGGTTTGTTTGCGAGCTGCTGCAAATGTGGCAACGAACTATAAGGCTAAGGTTTTCTACTTGGACTCAGGCAATTCCTTTTCACCCCAACGCATCTCAGGCTTTGTTAATTGGAAACCCGGAACTGCTTTAGAAAGGACTGAACAGAGCATGCTTCAACAAGTAATGAGCAGTATTTCATGTCACTCTGTGTTCAACATTTTTGCAATGTTTGATGTCTTGCATCAGCTGGAATTCAATTTGAGATCCCAGATGGGCAAAGGGGATCGGAGAGTGCAGTTACTGATTGTAGATTCGATTTCTTCGCTAATTACACCCATCCTTGGTGGAAGTAGTTCACAGGGACATGCTTTGATGATATCTGCTGGAACACTACTGAAGAAAATAGCTCATGAACATAATATAGCAGTACTGGTAACAAATCACACTGTGGGTGGAGATAGAGGTACTTCAAAACCTGCCCTAGGAGAGAGTTGGAAGAGTGTTCCACACGTGAGGCTTCAGCTTTCCCGAGATGCAGGAAGCAATGTCTGCCAAGCTTCAATATTAAAACACTCATCCATGGTATATTCCTTTATGCACACGCATCATTGA

Protein sequence

MAPLKSLEQVCPLIDSNFQTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQILSIIDAAERQPWMNGLELLEDARENKHILSTDFEGIDILLGGGLREGQLTEIVGPSSSGKTQVCLRAAANVATNYKAKVFYLDSGNSFSPQRISGFVNWKPGTALERTEQSMLQQVMSSISCHSVFNIFAMFDVLHQLEFNLRSQMGKGDRRVQLLIVDSISSLITPILGGSSSQGHALMISAGTLLKKIAHEHNIAVLVTNHTVGGDRGTSKPALGESWKSVPHVRLQLSRDAGSNVCQASILKHSSMVYSFMHTHH

Homology

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BLAST of HG10001439 vs. NCBI nr
Match: XP_038901758.1 (DNA repair protein RAD51 homolog 4 isoform X2 [Benincasa hispida])

HSP 1 Score: 591.7 bits (1524), Expect = 3.9e-165
Identity = 296/310 (95.48%), Postives = 303/310 (97.74%), Query Frame = 0


Query: 1   MAPLKSLEQVCPLIDSNFQTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQ 60
           MAPLKSLEQVCPLIDSNFQTFCASHGIFTVEDFLIHDLY LAAFAEQQPASEKLKQGITQ
Sbjct: 1   MAPLKSLEQVCPLIDSNFQTFCASHGIFTVEDFLIHDLYALAAFAEQQPASEKLKQGITQ 60

Query: 61  ILSIIDAAERQPWMNGLELLEDARENKHILSTDFEGIDILLGGGLREGQLTEIVGPSSSG 120
           ILSIIDAAERQPWMNGLELLEDARENKHILST FEGID+LLGGGLREGQLTEIVGPSSSG
Sbjct: 61  ILSIIDAAERQPWMNGLELLEDARENKHILSTGFEGIDVLLGGGLREGQLTEIVGPSSSG 120

Query: 121 KTQVCLRAAANVATNYKAKVFYLDSGNSFSPQRISGFVNWKPGTALERTEQSMLQQVMSS 180
           KTQVCLRAA+NV+TNYKAKVFYLDSGNSFSPQRISGFVNWKPGTAL+RTEQSMLQQV+SS
Sbjct: 121 KTQVCLRAASNVSTNYKAKVFYLDSGNSFSPQRISGFVNWKPGTALDRTEQSMLQQVLSS 180

Query: 181 ISCHSVFNIFAMFDVLHQLEFNLRSQMGKGDRRVQLLIVDSISSLITPILGGSSSQGHAL 240
           ISCHSVFNIF MFD LHQLEFNLRSQM KG +RVQLLIVDSISSL+TPILGGS SQGHAL
Sbjct: 181 ISCHSVFNIFTMFDALHQLEFNLRSQMCKGHQRVQLLIVDSISSLVTPILGGSGSQGHAL 240

Query: 241 MISAGTLLKKIAHEHNIAVLVTNHTVGGDRGTSKPALGESWKSVPHVRLQLSRDAGSNVC 300
           MISAGTLLKKIAHEHNIAVLVTNHTVGGDRGTSKPALGESWKSVPHVRLQLSRDAGSNVC
Sbjct: 241 MISAGTLLKKIAHEHNIAVLVTNHTVGGDRGTSKPALGESWKSVPHVRLQLSRDAGSNVC 300

Query: 301 QASILKHSSM 311
           QASILKHSSM
Sbjct: 301 QASILKHSSM 310

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BLAST of HG10001439 vs. NCBI nr
Match: XP_038901757.1 (DNA repair protein RAD51 homolog 4 isoform X1 [Benincasa hispida])

HSP 1 Score: 586.3 bits (1510), Expect = 1.6e-163
Identity = 296/313 (94.57%), Postives = 303/313 (96.81%), Query Frame = 0


Query: 1   MAPLKSLEQVCPLIDSNFQTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQ 60
           MAPLKSLEQVCPLIDSNFQTFCASHGIFTVEDFLIHDLY LAAFAEQQPASEKLKQGITQ
Sbjct: 1   MAPLKSLEQVCPLIDSNFQTFCASHGIFTVEDFLIHDLYALAAFAEQQPASEKLKQGITQ 60

Query: 61  ILSIIDAAERQPWMNGLELLEDARENKHILSTDFEGIDILLGGGLREGQLTEIVGPSSSG 120
           ILSIIDAAERQPWMNGLELLEDARENKHILST FEGID+LLGGGLREGQLTEIVGPSSSG
Sbjct: 61  ILSIIDAAERQPWMNGLELLEDARENKHILSTGFEGIDVLLGGGLREGQLTEIVGPSSSG 120

Query: 121 KTQVCLRAAANVATNYKAKVFYLDSGNSFSPQRISGFVNWKPGTALERTEQSMLQQVMSS 180
           KTQVCLRAA+NV+TNYKAKVFYLDSGNSFSPQRISGFVNWKPGTAL+RTEQSMLQQV+SS
Sbjct: 121 KTQVCLRAASNVSTNYKAKVFYLDSGNSFSPQRISGFVNWKPGTALDRTEQSMLQQVLSS 180

Query: 181 ISCHSVFNIFAMFDVLHQLEFNLRSQMGKGDRRVQLLIVDSISSLITPILGGSSS---QG 240
           ISCHSVFNIF MFD LHQLEFNLRSQM KG +RVQLLIVDSISSL+TPILGGS S   QG
Sbjct: 181 ISCHSVFNIFTMFDALHQLEFNLRSQMCKGHQRVQLLIVDSISSLVTPILGGSGSQGMQG 240

Query: 241 HALMISAGTLLKKIAHEHNIAVLVTNHTVGGDRGTSKPALGESWKSVPHVRLQLSRDAGS 300
           HALMISAGTLLKKIAHEHNIAVLVTNHTVGGDRGTSKPALGESWKSVPHVRLQLSRDAGS
Sbjct: 241 HALMISAGTLLKKIAHEHNIAVLVTNHTVGGDRGTSKPALGESWKSVPHVRLQLSRDAGS 300

Query: 301 NVCQASILKHSSM 311
           NVCQASILKHSSM
Sbjct: 301 NVCQASILKHSSM 313

[Close]

BLAST of HG10001439 vs. NCBI nr
Match: XP_031743457.1 (DNA repair protein RAD51 homolog 4 isoform X2 [Cucumis sativus])

HSP 1 Score: 560.8 bits (1444), Expect = 7.4e-156
Identity = 284/327 (86.85%), Postives = 301/327 (92.05%), Query Frame = 0


Query: 1   MAPLKSLEQVCPLIDSNFQTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQ 60
           MAPLKSLE++CP IDSNF TFCASHGIFTVEDFLI DLYVLAAFAEQQPASEKLKQGITQ
Sbjct: 1   MAPLKSLEELCPFIDSNFLTFCASHGIFTVEDFLIRDLYVLAAFAEQQPASEKLKQGITQ 60

Query: 61  ILSIIDAAERQPWMNGLELLEDARENKHILSTDFEGIDILLGGGLREGQLTEIVGPSSSG 120
           ILSIIDA ERQPW+NGLELLEDARENK+ILS  FEG+D+LLGGGLREGQLTEIVGPSSSG
Sbjct: 61  ILSIIDATERQPWVNGLELLEDARENKNILSIGFEGVDVLLGGGLREGQLTEIVGPSSSG 120

Query: 121 KTQVCLRAAANVATNYKAKVFYLDSGNSFSPQRISGFVNWKPGTALE------------- 180
           KTQVCLRAA+NVA NYKA+VFY+D+GNSFSPQRISGFVNWKPGTAL+             
Sbjct: 121 KTQVCLRAASNVAKNYKAEVFYMDTGNSFSPQRISGFVNWKPGTALDWARQKLSLLQWTE 180

Query: 181 ----RTEQSMLQQVMSSISCHSVFNIFAMFDVLHQLEFNLRSQMGKGDRRVQLLIVDSIS 240
               ++EQSMLQ+VM+SISCHSVFNIFA+FDVLHQLEFNLRSQ  KGDRRVQLLI+DSIS
Sbjct: 181 IINNKSEQSMLQRVMTSISCHSVFNIFALFDVLHQLEFNLRSQTCKGDRRVQLLIIDSIS 240

Query: 241 SLITPILGGSSSQGHALMISAGTLLKKIAHEHNIAVLVTNHTVGGDRGTSKPALGESWKS 300
           SLITPILGGSSSQGHALMISAGTLLKKIAHEHNIAVLVTNHTVGGDRGTSKPALGESWKS
Sbjct: 241 SLITPILGGSSSQGHALMISAGTLLKKIAHEHNIAVLVTNHTVGGDRGTSKPALGESWKS 300

Query: 301 VPHVRLQLSRDAGSNVCQASILKHSSM 311
           VPHVRLQLSRDAGSNVCQASILKHSSM
Sbjct: 301 VPHVRLQLSRDAGSNVCQASILKHSSM 327

[Close]

BLAST of HG10001439 vs. NCBI nr
Match: XP_031743458.1 (DNA repair protein RAD51 homolog 4 isoform X3 [Cucumis sativus] >KGN47440.2 hypothetical protein Csa_022946 [Cucumis sativus])

HSP 1 Score: 558.9 bits (1439), Expect = 2.8e-155
Identity = 284/327 (86.85%), Postives = 300/327 (91.74%), Query Frame = 0


Query: 1   MAPLKSLEQVCPLIDSNFQTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQ 60
           MAPLKSLE++CP IDSNF TFCASHGIFTVEDFLI DLYVLAAFAEQQPASEKLKQGITQ
Sbjct: 1   MAPLKSLEELCPFIDSNFLTFCASHGIFTVEDFLIRDLYVLAAFAEQQPASEKLKQGITQ 60

Query: 61  ILSIIDAAERQPWMNGLELLEDARENKHILSTDFEGIDILLGGGLREGQLTEIVGPSSSG 120
           ILSIIDA ERQPW+NGLELLEDARENK+ILS  FEG+D+LLGGGLREGQLTEIVGPSSSG
Sbjct: 61  ILSIIDATERQPWVNGLELLEDARENKNILSIGFEGVDVLLGGGLREGQLTEIVGPSSSG 120

Query: 121 KTQVCLRAAANVATNYKAKVFYLDSGNSFSPQRISGFVNWKPGTALERTEQSMLQQVMSS 180
           KTQVCLRAA+NVA NYKA+VFY+D+GNSFSPQRISGFVNWKPGTAL+ +EQSMLQ+VM+S
Sbjct: 121 KTQVCLRAASNVAKNYKAEVFYMDTGNSFSPQRISGFVNWKPGTALDWSEQSMLQRVMTS 180

Query: 181 ISCHSVFNIFAMFDVLHQLEFNLRSQMGKGDRRVQLLIVDSISSLITPILGGSSSQGHAL 240
           ISCHSVFNIFA+FDVLHQLEFNLRSQ  KGDRRVQLLI+DSISSLITPILGGSSSQGHAL
Sbjct: 181 ISCHSVFNIFALFDVLHQLEFNLRSQTCKGDRRVQLLIIDSISSLITPILGGSSSQGHAL 240

Query: 241 MISAGTLLKKIAHEHNIAVL-----------------VTNHTVGGDRGTSKPALGESWKS 300
           MISAGTLLKKIAHEHNIAVL                 VTNHTVGGDRGTSKPALGESWKS
Sbjct: 241 MISAGTLLKKIAHEHNIAVLVISYLKILQLQHGFLSTVTNHTVGGDRGTSKPALGESWKS 300

Query: 301 VPHVRLQLSRDAGSNVCQASILKHSSM 311
           VPHVRLQLSRDAGSNVCQASILKHSSM
Sbjct: 301 VPHVRLQLSRDAGSNVCQASILKHSSM 327

[Close]

BLAST of HG10001439 vs. NCBI nr
Match: XP_008448361.1 (PREDICTED: DNA repair protein RAD51 homolog 4 isoform X2 [Cucumis melo])

HSP 1 Score: 555.8 bits (1431), Expect = 2.4e-154
Identity = 279/310 (90.00%), Postives = 294/310 (94.84%), Query Frame = 0


Query: 1   MAPLKSLEQVCPLIDSNFQTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQ 60
           MAPLK LE++ P IDSNF TFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQ
Sbjct: 1   MAPLKFLEELYPFIDSNFLTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQ 60

Query: 61  ILSIIDAAERQPWMNGLELLEDARENKHILSTDFEGIDILLGGGLREGQLTEIVGPSSSG 120
           ILSIID  ERQPW+NGLELLEDARENKHILS  FE +D+LLGGGLREGQLTEIVGPSSSG
Sbjct: 61  ILSIIDVTERQPWLNGLELLEDARENKHILSIGFERVDVLLGGGLREGQLTEIVGPSSSG 120

Query: 121 KTQVCLRAAANVATNYKAKVFYLDSGNSFSPQRISGFVNWKPGTALERTEQSMLQQVMSS 180
           KTQVCLRAA+NVA NY A+VFY+D+GNSFSPQRISGFVNWKPGTAL+ +EQSMLQQVMSS
Sbjct: 121 KTQVCLRAASNVAKNYNAEVFYVDTGNSFSPQRISGFVNWKPGTALDWSEQSMLQQVMSS 180

Query: 181 ISCHSVFNIFAMFDVLHQLEFNLRSQMGKGDRRVQLLIVDSISSLITPILGGSSSQGHAL 240
           ISCHSVF+IFA+FDVLH+LEFNLRSQ  KGDRRVQ LI+DSISSLITPILGGSSSQGHAL
Sbjct: 181 ISCHSVFDIFALFDVLHRLEFNLRSQTCKGDRRVQFLIIDSISSLITPILGGSSSQGHAL 240

Query: 241 MISAGTLLKKIAHEHNIAVLVTNHTVGGDRGTSKPALGESWKSVPHVRLQLSRDAGSNVC 300
           MISAGTLLKKIAHEHNIAVLVTNHTVGGDRGTSKPALGESWKSVPHVRLQLSRDAGSNV 
Sbjct: 241 MISAGTLLKKIAHEHNIAVLVTNHTVGGDRGTSKPALGESWKSVPHVRLQLSRDAGSNVY 300

Query: 301 QASILKHSSM 311
           QASILKHSSM
Sbjct: 301 QASILKHSSM 310

[Close]

BLAST of HG10001439 vs. ExPASy Swiss-Prot
Match: Q9LQQ2 (DNA repair protein RAD51 homolog 4 OS=Arabidopsis thaliana OX=3702 GN=RAD51D PE=2 SV=2)

HSP 1 Score: 360.5 bits (924), Expect = 1.9e-98
Identity = 184/312 (58.97%), Postives = 240/312 (76.92%), Query Frame = 0


Query: 1   MAPLKSLEQVCPLIDSNFQTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQ 60
           MAPLK LE+  P+ID+ FQ FCASHGI T+EDFL+HDLY L AF+++Q  +++LK+GIT 
Sbjct: 1   MAPLKHLEKENPIIDACFQDFCASHGILTIEDFLLHDLYELTAFSQRQTNADRLKEGITL 60

Query: 61  ILSIIDAAERQPWMNGLELLEDARENKHILSTDFEGIDILLGGGLREGQLTEIVGPSSSG 120
           ILS+I+  + +P +NGL+LLED   NKH LST  +  D LL GG REGQLTE+VGPSSSG
Sbjct: 61  ILSLIE-RQCRPLVNGLKLLEDLHRNKHTLSTGDKETDSLLQGGFREGQLTELVGPSSSG 120

Query: 121 KTQVCLRAAANVATNYKAKVFYLDSGNSFSPQRISGFVNWKPGTALERTEQSMLQQVMSS 180
           KTQ C++AAA+VA N+  +V YLD+GNSFS +RI+ F+          ++ ++ Q+VMS 
Sbjct: 121 KTQFCMQAAASVAENHLGRVLYLDTGNSFSARRIAQFI-------CSSSDATLGQKVMSR 180

Query: 181 ISCHSVFNIFAMFDVLHQLEFNLRSQMGKGDRRVQLLIVDSISSLITPILGGSSSQGHAL 240
           I CH+V++I+ +FD L  LE  LR QM   + R++LL+VDSISSLITPILGGS SQG AL
Sbjct: 181 ILCHTVYDIYTLFDTLQDLEITLRLQMNVNESRLRLLVVDSISSLITPILGGSGSQGRAL 240

Query: 241 MISAGTLLKKIAHEHNIAVLVTNHTV--GGDRGTSKPALGESWKSVPHVRLQLSRDAGSN 300
           M++ G LLKK+AHEH+IA+LVTNHTV  GG+ G +KPALGE+WKS+PHVRL LSRD  ++
Sbjct: 241 MVAIGYLLKKLAHEHSIAILVTNHTVGAGGEGGKTKPALGETWKSIPHVRLSLSRDHKNS 300

Query: 301 VCQASILKHSSM 311
            C  SILKH+S+
Sbjct: 301 NCTISILKHTSL 304

[Close]

BLAST of HG10001439 vs. ExPASy Swiss-Prot
Match: Q2HJ51 (DNA repair protein RAD51 homolog 4 OS=Bos taurus OX=9913 GN=RAD51D PE=2 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.4e-35
Identity = 103/289 (35.64%), Postives = 148/289 (51.21%), Query Frame = 0


Query: 10  VCPLIDSNFQTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQILSIIDAAE 69
           +CP +  +      S GI TV D +  D   L   A++   S K    + ++L    +A 
Sbjct: 8   LCPGLTQDMVQLLQSRGIKTVVDLVCAD---LEEVAQKCGLSYKALVALRRVLLAQFSAF 67

Query: 70  RQPWMNGLELLEDARENKHILSTDFEGIDILLGGGLREGQLTEIVGPSSSGKTQVCLRAA 129
                NG +L E+ + +  ILST    +D LL  GL  G++TEIVG   SGKTQVCL  A
Sbjct: 68  P---FNGADLYEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGAPGSGKTQVCLCVA 127

Query: 130 ANVATNYKAKVFYLDSGNSFSPQRISGFVNWKPGTALERTEQSMLQQVMSSISCHSVFNI 189
           A+VA   +  V Y+DS    +  RI   +  +  T  E  +   LQ+    I     F+I
Sbjct: 128 AHVAHGLQQNVLYIDSNGGLTASRILQLLQAR--TPDEEEQAGALQR----IQVVRAFDI 187

Query: 190 FAMFDVLHQLEFNLRSQMGKGDRRVQLLIVDSISSLITPILGGSSSQGHALMISAGTLLK 249
           F M DVL  L   +  Q+      +++++VDS+++++ P+LGG   +G ALM+     LK
Sbjct: 188 FQMLDVLQDLRGAVSQQVSSSSGTLKVVVVDSVAAVVAPLLGGQQREGLALMMQLARELK 247

Query: 250 KIAHEHNIAVLVTNH-TVGGDRGTSKPALGESWKSVPHVRLQLSRDAGS 298
            +A + ++AVLVTNH T   D G  KPALG SW  VP  RL L     S
Sbjct: 248 TLARDLSVAVLVTNHMTRDRDSGQLKPALGRSWSFVPSTRLLLDSTQSS 284

[Close]

BLAST of HG10001439 vs. ExPASy Swiss-Prot
Match: O75771 (DNA repair protein RAD51 homolog 4 OS=Homo sapiens OX=9606 GN=RAD51D PE=1 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.4e-35
Identity = 102/289 (35.29%), Postives = 150/289 (51.90%), Query Frame = 0


Query: 10  VCPLIDSNFQTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQILSIIDAAE 69
           +CP +         SH I TV D +  D   L   A++   S K    + ++L    +A 
Sbjct: 8   LCPGLTEEMIQLLRSHRIKTVVDLVSAD---LEEVAQKCGLSYKALVALRRVLLAQFSAF 67

Query: 70  RQPWMNGLELLEDARENKHILSTDFEGIDILLGGGLREGQLTEIVGPSSSGKTQVCLRAA 129
               +NG +L E+ + +  ILST    +D LL  GL  G++TEIVG   SGKTQVCL  A
Sbjct: 68  P---VNGADLYEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMA 127

Query: 130 ANVATNYKAKVFYLDSGNSFSPQRISGFVNWKPGTALERTEQSMLQQVMSSISCHSVFNI 189
           ANVA   +  V Y+DS    +  R+   +  K     E+ E     QV+ +      F+I
Sbjct: 128 ANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQVVHA------FDI 187

Query: 190 FAMFDVLHQLEFNLRSQMGKGDRRVQLLIVDSISSLITPILGGSSSQGHALMISAGTLLK 249
           F M DVL +L   +  Q+      V++++VDS++++++P+LGG   +G ALM+     LK
Sbjct: 188 FQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQLARELK 247

Query: 250 KIAHEHNIAVLVTNH-TVGGDRGTSKPALGESWKSVPHVRLQLSRDAGS 298
            +A +  +AV+VTNH T   D G  KPALG SW  VP  R+ L    G+
Sbjct: 248 TLARDLGMAVVVTNHITRDRDSGRLKPALGRSWSFVPSTRILLDTIEGA 284

[Close]

BLAST of HG10001439 vs. ExPASy Swiss-Prot
Match: O55230 (DNA repair protein RAD51 homolog 4 OS=Mus musculus OX=10090 GN=Rad51d PE=1 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.7e-33
Identity = 88/231 (38.10%), Postives = 127/231 (54.98%), Query Frame = 0


Query: 74  MNGLELLEDARENKHILSTDFEGIDILLGGGLREGQLTEIVGPSSSGKTQVCLRAAANVA 133
           +NG +L E+ + +  ILST    +D LL  GL  G++TEIVG   SGKTQVCL  AANVA
Sbjct: 66  LNGADLYEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCVAANVA 125

Query: 134 TNYKAKVFYLDSGNSFSPQRISGFVNWKPGTALERTEQSMLQQVMSSISCHSVFNIFAMF 193
            + +  V Y+DS    +  R+   +  +  T  E  + S LQ++    S    F+IF M 
Sbjct: 126 HSLQQNVLYVDSNGGMTASRLLQLLQAR--TQDEEKQASALQRIQVVRS----FDIFRML 185

Query: 194 DVLHQLEFNLRSQMGKGDRRVQLLIVDSISSLITPILGGSSSQGHALMISAGTLLKKIAH 253
           D+L  L   +  Q       V+++IVDS+++++ P+LGG   +G ALM+     LK +A 
Sbjct: 186 DMLQDLRGTIAQQEATSSGAVKVVIVDSVTAVVAPLLGGQQREGLALMMQLARELKILAR 245

Query: 254 EHNIAVLVTNH-TVGGDRGTSKPALGESWKSVPHVRLQLSRDAGSNVCQAS 304
           +  +AV+VTNH T   D    KPALG SW  VP  R+ L    G+    +S
Sbjct: 246 DLGVAVVVTNHLTRDWDGRRFKPALGRSWSFVPSTRILLDVTEGAGTLGSS 290

[Close]

BLAST of HG10001439 vs. ExPASy Swiss-Prot
Match: Q1ZXF0 (Probable DNA repair protein RAD51 homolog 4 OS=Dictyostelium discoideum OX=44689 GN=rad51d PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 6.1e-28
Identity = 76/250 (30.40%), Postives = 134/250 (53.60%), Query Frame = 0


Query: 74  MNGLELLEDARENKHILSTDFEGIDILLGG-GLREGQLTEIVGPSSSGKTQVCLRAAANV 133
           +NG +   D +E K   S+  + +D LLGG G   G++ E+VG +S GKTQ+ +  + N+
Sbjct: 73  INGYQHYLDVKEFKTHYSSGIKLLDQLLGGNGFTSGEIYELVGNTSCGKTQISMCCSLNL 132

Query: 134 ATNYKAKVFYLDSGNSFSPQRI-----SGFV---------------NWKPGTALERTEQS 193
           +  Y + + Y+DS NSFSP R+     S ++               + K     ++ EQ 
Sbjct: 133 SQQYNSNIIYIDSSNSFSPPRLIEIFKSNYLIKQRQKQQQKQQQKQHQKQQENNDKIEQD 192

Query: 194 MLQQVMSSISCHSVFNIFAMFDVLHQLEFNL----------RSQMGKGDRRVQLLIVDSI 253
            + +++  I   + F+   + ++L  ++  L           +Q  KG   ++++++DSI
Sbjct: 193 KILKILDRIKVFNCFDSITLLELLSTIDSTLSIISDEIPTFENQFYKG---LKMVVIDSI 252

Query: 254 SSLITPILGGSSSQGHALMISAGTLLKKIAHEHNIAVLVTNHTVGGDRGTSKPALGESWK 293
            +L+ PI+GG  +QGH  M+    L+K IA  + I  L+TN+TVGG+   +K ALGE+W 
Sbjct: 253 GTLLAPIIGGKQTQGHYTMMMISRLIKYIADTYQIIFLITNNTVGGNSFDNKAALGEAWS 312

[Close]

BLAST of HG10001439 vs. ExPASy TrEMBL
Match: A0A0A0KCU0 (RECA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G302700 PE=4 SV=1)

HSP 1 Score: 569.7 bits (1467), Expect = 7.7e-159
Identity = 284/310 (91.61%), Postives = 300/310 (96.77%), Query Frame = 0


Query: 1   MAPLKSLEQVCPLIDSNFQTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQ 60
           MAPLKSLE++CP IDSNF TFCASHGIFTVEDFLI DLYVLAAFAEQQPASEKLKQGITQ
Sbjct: 1   MAPLKSLEELCPFIDSNFLTFCASHGIFTVEDFLIRDLYVLAAFAEQQPASEKLKQGITQ 60

Query: 61  ILSIIDAAERQPWMNGLELLEDARENKHILSTDFEGIDILLGGGLREGQLTEIVGPSSSG 120
           ILSIIDA ERQPW+NGLELLEDARENK+ILS  FEG+D+LLGGGLREGQLTEIVGPSSSG
Sbjct: 61  ILSIIDATERQPWVNGLELLEDARENKNILSIGFEGVDVLLGGGLREGQLTEIVGPSSSG 120

Query: 121 KTQVCLRAAANVATNYKAKVFYLDSGNSFSPQRISGFVNWKPGTALERTEQSMLQQVMSS 180
           KTQVCLRAA+NVA NYKA+VFY+D+GNSFSPQRISGFVNWKPGTAL+ +EQSMLQ+VM+S
Sbjct: 121 KTQVCLRAASNVAKNYKAEVFYMDTGNSFSPQRISGFVNWKPGTALDWSEQSMLQRVMTS 180

Query: 181 ISCHSVFNIFAMFDVLHQLEFNLRSQMGKGDRRVQLLIVDSISSLITPILGGSSSQGHAL 240
           ISCHSVFNIFA+FDVLHQLEFNLRSQ  KGDRRVQLLI+DSISSLITPILGGSSSQGHAL
Sbjct: 181 ISCHSVFNIFALFDVLHQLEFNLRSQTCKGDRRVQLLIIDSISSLITPILGGSSSQGHAL 240

Query: 241 MISAGTLLKKIAHEHNIAVLVTNHTVGGDRGTSKPALGESWKSVPHVRLQLSRDAGSNVC 300
           MISAGTLLKKIAHEHNIAVLVTNHTVGGDRGTSKPALGESWKSVPHVRLQLSRDAGSNVC
Sbjct: 241 MISAGTLLKKIAHEHNIAVLVTNHTVGGDRGTSKPALGESWKSVPHVRLQLSRDAGSNVC 300

Query: 301 QASILKHSSM 311
           QASILKHSSM
Sbjct: 301 QASILKHSSM 310

[Close]

BLAST of HG10001439 vs. ExPASy TrEMBL
Match: A0A1S3BJI2 (DNA repair protein RAD51 homolog 4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490575 PE=4 SV=1)

HSP 1 Score: 555.8 bits (1431), Expect = 1.1e-154
Identity = 279/310 (90.00%), Postives = 294/310 (94.84%), Query Frame = 0


Query: 1   MAPLKSLEQVCPLIDSNFQTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQ 60
           MAPLK LE++ P IDSNF TFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQ
Sbjct: 1   MAPLKFLEELYPFIDSNFLTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQ 60

Query: 61  ILSIIDAAERQPWMNGLELLEDARENKHILSTDFEGIDILLGGGLREGQLTEIVGPSSSG 120
           ILSIID  ERQPW+NGLELLEDARENKHILS  FE +D+LLGGGLREGQLTEIVGPSSSG
Sbjct: 61  ILSIIDVTERQPWLNGLELLEDARENKHILSIGFERVDVLLGGGLREGQLTEIVGPSSSG 120

Query: 121 KTQVCLRAAANVATNYKAKVFYLDSGNSFSPQRISGFVNWKPGTALERTEQSMLQQVMSS 180
           KTQVCLRAA+NVA NY A+VFY+D+GNSFSPQRISGFVNWKPGTAL+ +EQSMLQQVMSS
Sbjct: 121 KTQVCLRAASNVAKNYNAEVFYVDTGNSFSPQRISGFVNWKPGTALDWSEQSMLQQVMSS 180

Query: 181 ISCHSVFNIFAMFDVLHQLEFNLRSQMGKGDRRVQLLIVDSISSLITPILGGSSSQGHAL 240
           ISCHSVF+IFA+FDVLH+LEFNLRSQ  KGDRRVQ LI+DSISSLITPILGGSSSQGHAL
Sbjct: 181 ISCHSVFDIFALFDVLHRLEFNLRSQTCKGDRRVQFLIIDSISSLITPILGGSSSQGHAL 240

Query: 241 MISAGTLLKKIAHEHNIAVLVTNHTVGGDRGTSKPALGESWKSVPHVRLQLSRDAGSNVC 300
           MISAGTLLKKIAHEHNIAVLVTNHTVGGDRGTSKPALGESWKSVPHVRLQLSRDAGSNV 
Sbjct: 241 MISAGTLLKKIAHEHNIAVLVTNHTVGGDRGTSKPALGESWKSVPHVRLQLSRDAGSNVY 300

Query: 301 QASILKHSSM 311
           QASILKHSSM
Sbjct: 301 QASILKHSSM 310

[Close]

BLAST of HG10001439 vs. ExPASy TrEMBL
Match: A0A6J1L7F6 (DNA repair protein RAD51 homolog 4 OS=Cucurbita maxima OX=3661 GN=LOC111499870 PE=4 SV=1)

HSP 1 Score: 546.6 bits (1407), Expect = 7.0e-152
Identity = 275/310 (88.71%), Postives = 293/310 (94.52%), Query Frame = 0


Query: 1   MAPLKSLEQVCPLIDSNFQTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQ 60
           MAPLKSLEQ+ P+ID+ FQ+FCASHGIFTVEDFLIHDLYVLAAFAEQQP SEKLKQGITQ
Sbjct: 1   MAPLKSLEQLHPIIDTTFQSFCASHGIFTVEDFLIHDLYVLAAFAEQQPESEKLKQGITQ 60

Query: 61  ILSIIDAAERQPWMNGLELLEDARENKHILSTDFEGIDILLGGGLREGQLTEIVGPSSSG 120
           ILS+I+ AERQPWMNGLELLEDARENKH LST FEG+D LLGGGLREGQLTEIVGPSSSG
Sbjct: 61  ILSVIN-AERQPWMNGLELLEDARENKHFLSTGFEGVDTLLGGGLREGQLTEIVGPSSSG 120

Query: 121 KTQVCLRAAANVATNYKAKVFYLDSGNSFSPQRISGFVNWKPGTALERTEQSMLQQVMSS 180
           KTQVCLRAA+NVATNY AKVFYLD+GNSFSPQRISGFVNWK G ++ RT Q+MLQQVMSS
Sbjct: 121 KTQVCLRAASNVATNYNAKVFYLDTGNSFSPQRISGFVNWKSGPSIARTGQNMLQQVMSS 180

Query: 181 ISCHSVFNIFAMFDVLHQLEFNLRSQMGKGDRRVQLLIVDSISSLITPILGGSSSQGHAL 240
           ISCHSV++IFA FDVLHQLEFNLRSQ  KGDRRVQLLIVDSISSLITPILGGSSSQGHAL
Sbjct: 181 ISCHSVYDIFAFFDVLHQLEFNLRSQTCKGDRRVQLLIVDSISSLITPILGGSSSQGHAL 240

Query: 241 MISAGTLLKKIAHEHNIAVLVTNHTVGGDRGTSKPALGESWKSVPHVRLQLSRDAGSNVC 300
           M+SAG+LLKKIAHE+NIAVLV NHTVGGDRGTSKPALG+SWKSVPHVRLQLSRD GSNVC
Sbjct: 241 MVSAGSLLKKIAHEYNIAVLVINHTVGGDRGTSKPALGQSWKSVPHVRLQLSRDPGSNVC 300

Query: 301 QASILKHSSM 311
           QASILKHSSM
Sbjct: 301 QASILKHSSM 309

[Close]

BLAST of HG10001439 vs. ExPASy TrEMBL
Match: A0A6J1G6S8 (DNA repair protein RAD51 homolog 4 OS=Cucurbita moschata OX=3662 GN=LOC111451356 PE=4 SV=1)

HSP 1 Score: 541.2 bits (1393), Expect = 2.9e-150
Identity = 272/310 (87.74%), Postives = 292/310 (94.19%), Query Frame = 0


Query: 1   MAPLKSLEQVCPLIDSNFQTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQ 60
           MAPLKSLEQ+ P+ID+ FQ+FCASHGIFTVEDFLIHDLYVLAAFAEQQP SEKLKQGITQ
Sbjct: 1   MAPLKSLEQLHPIIDTTFQSFCASHGIFTVEDFLIHDLYVLAAFAEQQPESEKLKQGITQ 60

Query: 61  ILSIIDAAERQPWMNGLELLEDARENKHILSTDFEGIDILLGGGLREGQLTEIVGPSSSG 120
           ILS+I+ AERQ WMNGLELLEDARENKH+LST FEG+D LLGGGLREGQLTEIVGPSSSG
Sbjct: 61  ILSVIN-AERQSWMNGLELLEDARENKHVLSTGFEGVDTLLGGGLREGQLTEIVGPSSSG 120

Query: 121 KTQVCLRAAANVATNYKAKVFYLDSGNSFSPQRISGFVNWKPGTALERTEQSMLQQVMSS 180
           KTQVCLRAA+NVATNY AKVFYLD+GNSFSPQRISGFVNWK G ++ RT Q+MLQQVM+S
Sbjct: 121 KTQVCLRAASNVATNYNAKVFYLDTGNSFSPQRISGFVNWKSGPSIARTGQNMLQQVMNS 180

Query: 181 ISCHSVFNIFAMFDVLHQLEFNLRSQMGKGDRRVQLLIVDSISSLITPILGGSSSQGHAL 240
           ISCHSV++IF  FDVLHQLEFNLRSQ  KGDRRVQLLIVDSISSLITPILGGSSSQGHAL
Sbjct: 181 ISCHSVYDIFTFFDVLHQLEFNLRSQTCKGDRRVQLLIVDSISSLITPILGGSSSQGHAL 240

Query: 241 MISAGTLLKKIAHEHNIAVLVTNHTVGGDRGTSKPALGESWKSVPHVRLQLSRDAGSNVC 300
           M+SAG+LLKKIAHE+NIAVLV NHTVGGDRGTSKPALGESWKSVPHVRLQLSRD GS+VC
Sbjct: 241 MVSAGSLLKKIAHEYNIAVLVINHTVGGDRGTSKPALGESWKSVPHVRLQLSRDPGSSVC 300

Query: 301 QASILKHSSM 311
           QASILKHSSM
Sbjct: 301 QASILKHSSM 309

[Close]

BLAST of HG10001439 vs. ExPASy TrEMBL
Match: A0A1S3BIX1 (DNA repair protein RAD51 homolog 4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490575 PE=4 SV=1)

HSP 1 Score: 541.2 bits (1393), Expect = 2.9e-150
Identity = 279/337 (82.79%), Postives = 294/337 (87.24%), Query Frame = 0


Query: 1   MAPLKSLEQVCPLIDSNFQTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLK----- 60
           MAPLK LE++ P IDSNF TFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLK     
Sbjct: 1   MAPLKFLEELYPFIDSNFLTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQVKPS 60

Query: 61  ----------------------QGITQILSIIDAAERQPWMNGLELLEDARENKHILSTD 120
                                 QGITQILSIID  ERQPW+NGLELLEDARENKHILS  
Sbjct: 61  LHFPFSCLSFTVLNFSISCMCTQGITQILSIIDVTERQPWLNGLELLEDARENKHILSIG 120

Query: 121 FEGIDILLGGGLREGQLTEIVGPSSSGKTQVCLRAAANVATNYKAKVFYLDSGNSFSPQR 180
           FE +D+LLGGGLREGQLTEIVGPSSSGKTQVCLRAA+NVA NY A+VFY+D+GNSFSPQR
Sbjct: 121 FERVDVLLGGGLREGQLTEIVGPSSSGKTQVCLRAASNVAKNYNAEVFYVDTGNSFSPQR 180

Query: 181 ISGFVNWKPGTALERTEQSMLQQVMSSISCHSVFNIFAMFDVLHQLEFNLRSQMGKGDRR 240
           ISGFVNWKPGTAL+ +EQSMLQQVMSSISCHSVF+IFA+FDVLH+LEFNLRSQ  KGDRR
Sbjct: 181 ISGFVNWKPGTALDWSEQSMLQQVMSSISCHSVFDIFALFDVLHRLEFNLRSQTCKGDRR 240

Query: 241 VQLLIVDSISSLITPILGGSSSQGHALMISAGTLLKKIAHEHNIAVLVTNHTVGGDRGTS 300
           VQ LI+DSISSLITPILGGSSSQGHALMISAGTLLKKIAHEHNIAVLVTNHTVGGDRGTS
Sbjct: 241 VQFLIIDSISSLITPILGGSSSQGHALMISAGTLLKKIAHEHNIAVLVTNHTVGGDRGTS 300

Query: 301 KPALGESWKSVPHVRLQLSRDAGSNVCQASILKHSSM 311
           KPALGESWKSVPHVRLQLSRDAGSNV QASILKHSSM
Sbjct: 301 KPALGESWKSVPHVRLQLSRDAGSNVYQASILKHSSM 337

[Close]

BLAST of HG10001439 vs. TAIR 10
Match: AT1G07745.1 (homolog of RAD51 D )

HSP 1 Score: 360.5 bits (924), Expect = 1.4e-99
Identity = 184/312 (58.97%), Postives = 240/312 (76.92%), Query Frame = 0


Query: 1   MAPLKSLEQVCPLIDSNFQTFCASHGIFTVEDFLIHDLYVLAAFAEQQPASEKLKQGITQ 60
           MAPLK LE+  P+ID+ FQ FCASHGI T+EDFL+HDLY L AF+++Q  +++LK+GIT 
Sbjct: 1   MAPLKHLEKENPIIDACFQDFCASHGILTIEDFLLHDLYELTAFSQRQTNADRLKEGITL 60

Query: 61  ILSIIDAAERQPWMNGLELLEDARENKHILSTDFEGIDILLGGGLREGQLTEIVGPSSSG 120
           ILS+I+  + +P +NGL+LLED   NKH LST  +  D LL GG REGQLTE+VGPSSSG
Sbjct: 61  ILSLIE-RQCRPLVNGLKLLEDLHRNKHTLSTGDKETDSLLQGGFREGQLTELVGPSSSG 120

Query: 121 KTQVCLRAAANVATNYKAKVFYLDSGNSFSPQRISGFVNWKPGTALERTEQSMLQQVMSS 180
           KTQ C++AAA+VA N+  +V YLD+GNSFS +RI+ F+          ++ ++ Q+VMS 
Sbjct: 121 KTQFCMQAAASVAENHLGRVLYLDTGNSFSARRIAQFI-------CSSSDATLGQKVMSR 180

Query: 181 ISCHSVFNIFAMFDVLHQLEFNLRSQMGKGDRRVQLLIVDSISSLITPILGGSSSQGHAL 240
           I CH+V++I+ +FD L  LE  LR QM   + R++LL+VDSISSLITPILGGS SQG AL
Sbjct: 181 ILCHTVYDIYTLFDTLQDLEITLRLQMNVNESRLRLLVVDSISSLITPILGGSGSQGRAL 240

Query: 241 MISAGTLLKKIAHEHNIAVLVTNHTV--GGDRGTSKPALGESWKSVPHVRLQLSRDAGSN 300
           M++ G LLKK+AHEH+IA+LVTNHTV  GG+ G +KPALGE+WKS+PHVRL LSRD  ++
Sbjct: 241 MVAIGYLLKKLAHEHSIAILVTNHTVGAGGEGGKTKPALGETWKSIPHVRLSLSRDHKNS 300

Query: 301 VCQASILKHSSM 311
            C  SILKH+S+
Sbjct: 301 NCTISILKHTSL 304

[Close]

BLAST of HG10001439 vs. TAIR 10
Match: AT1G07745.2 (homolog of RAD51 D )

HSP 1 Score: 320.5 bits (820), Expect = 1.6e-87
Identity = 165/283 (58.30%), Postives = 217/283 (76.68%), Query Frame = 0


Query: 30  VEDFLIHDLYVLAAFAEQQPASEKLKQGITQILSIIDAAERQPWMNGLELLEDARENKHI 89
           VEDFL+HDLY L AF+++Q  +++LK+GIT ILS+I+  + +P +NGL+LLED   NKH 
Sbjct: 12  VEDFLLHDLYELTAFSQRQTNADRLKEGITLILSLIE-RQCRPLVNGLKLLEDLHRNKHT 71

Query: 90  LSTDFEGIDILLGGGLREGQLTEIVGPSSSGKTQVCLRAAANVATNYKAKVFYLDSGNSF 149
           LST  +  D LL GG REGQLTE+VGPSSSGKTQ C++AAA+VA N+  +V YLD+GNSF
Sbjct: 72  LSTGDKETDSLLQGGFREGQLTELVGPSSSGKTQFCMQAAASVAENHLGRVLYLDTGNSF 131

Query: 150 SPQRISGFVNWKPGTALERTEQSMLQQVMSSISCHSVFNIFAMFDVLHQLEFNLRSQMGK 209
           S +RI+ F+          ++ ++ Q+VMS I CH+V++I+ +FD L  LE  LR QM  
Sbjct: 132 SARRIAQFI-------CSSSDATLGQKVMSRILCHTVYDIYTLFDTLQDLEITLRLQMNV 191

Query: 210 GDRRVQLLIVDSISSLITPILGGSSSQGHALMISAGTLLKKIAHEHNIAVLVTNHTV--G 269
            + R++LL+VDSISSLITPILGGS SQG ALM++ G LLKK+AHEH+IA+LVTNHTV  G
Sbjct: 192 NESRLRLLVVDSISSLITPILGGSGSQGRALMVAIGYLLKKLAHEHSIAILVTNHTVGAG 251

Query: 270 GDRGTSKPALGESWKSVPHVRLQLSRDAGSNVCQASILKHSSM 311
           G+ G +KPALGE+WKS+PHVRL LSRD  ++ C  SILKH+S+
Sbjct: 252 GEGGKTKPALGETWKSIPHVRLSLSRDHKNSNCTISILKHTSL 286

[Close]

BLAST of HG10001439 vs. TAIR 10
Match: AT2G28560.1 (DNA repair (Rad51) family protein )

HSP 1 Score: 68.9 bits (167), Expect = 8.2e-12
Identity = 68/283 (24.03%), Postives = 117/283 (41.34%), Query Frame = 0


Query: 58  ITQILSIIDAAERQPWMNGLELLEDARENKHI---LSTDFEGIDILLGGGLREGQLTEIV 117
           I   +S I  A   P  +   LLE   EN+H+   L T  +G+D  L GG+  G LTE+V
Sbjct: 49  IRSAISFISEATSPPCQSARSLLEKKVENEHLSGHLPTHLKGLDDTLCGGIPFGVLTELV 108

Query: 118 GPSSSGKTQVCLRAAANVA-----TNYKAKVFYLDSGNSFSPQRI--SGFVNWKPGTALE 177
           GP   GK+Q C++ A + +          +V Y+D  + FS +R+   G  ++     L+
Sbjct: 109 GPPGIGKSQFCMKLALSASFPVAYGGLDGRVIYIDVESKFSSRRVIEMGLESFPEVFHLK 168

Query: 178 RTEQSMLQQVMSSISCHSVFNIFAMFDVLHQLEFNLRSQMGKGDRRVQLLIVDSISSLIT 237
              Q M  +++       V    ++ +    ++    S +     +V+LL++DS    +T
Sbjct: 169 GMAQEMAGRIL-------VLRPTSLANFTESIQELKNSIL---QNQVKLLVIDS----MT 228

Query: 238 PILGGSSSQGHALMISAG---TLLKKIAHEHNIAVLVTNHTVGGDRGTSK---------- 297
            +L G +  G       G   + LK +A    I ++VTN     +R  +           
Sbjct: 229 ALLSGENKPGAQRQPQLGWHISFLKSLAEFSRIPIVVTNQVRSQNRDETSQYSFQAKVKD 288

Query: 298 --------------PALGESWKSVPHVRLQLSRDAGSNVCQAS 304
                          ALG +W     +RL L   +G  + + +
Sbjct: 289 EFKDNTKTYDSHLVAALGINWAHAVTIRLVLEAKSGQRIIKVA 317

[Close]

BLAST of HG10001439 vs. TAIR 10
Match: AT2G28560.2 (DNA repair (Rad51) family protein )

HSP 1 Score: 68.9 bits (167), Expect = 8.2e-12
Identity = 68/283 (24.03%), Postives = 117/283 (41.34%), Query Frame = 0


Query: 58  ITQILSIIDAAERQPWMNGLELLEDARENKHI---LSTDFEGIDILLGGGLREGQLTEIV 117
           I   +S I  A   P  +   LLE   EN+H+   L T  +G+D  L GG+  G LTE+V
Sbjct: 49  IRSAISFISEATSPPCQSARSLLEKKVENEHLSGHLPTHLKGLDDTLCGGIPFGVLTELV 108

Query: 118 GPSSSGKTQVCLRAAANVA-----TNYKAKVFYLDSGNSFSPQRI--SGFVNWKPGTALE 177
           GP   GK+Q C++ A + +          +V Y+D  + FS +R+   G  ++     L+
Sbjct: 109 GPPGIGKSQFCMKLALSASFPVAYGGLDGRVIYIDVESKFSSRRVIEMGLESFPEVFHLK 168

Query: 178 RTEQSMLQQVMSSISCHSVFNIFAMFDVLHQLEFNLRSQMGKGDRRVQLLIVDSISSLIT 237
              Q M  +++       V    ++ +    ++    S +     +V+LL++DS    +T
Sbjct: 169 GMAQEMAGRIL-------VLRPTSLANFTESIQELKNSIL---QNQVKLLVIDS----MT 228

Query: 238 PILGGSSSQGHALMISAG---TLLKKIAHEHNIAVLVTNHTVGGDRGTSK---------- 297
            +L G +  G       G   + LK +A    I ++VTN     +R  +           
Sbjct: 229 ALLSGENKPGAQRQPQLGWHISFLKSLAEFSRIPIVVTNQVRSQNRDETSQYSFQAKVKD 288

Query: 298 --------------PALGESWKSVPHVRLQLSRDAGSNVCQAS 304
                          ALG +W     +RL L   +G  + + +
Sbjct: 289 EFKDNTKTYDSHLVAALGINWAHAVTIRLVLEAKSGQRIIKVA 317

[Close]

BLAST of HG10001439 vs. TAIR 10
Match: AT2G28560.3 (DNA repair (Rad51) family protein )

HSP 1 Score: 68.9 bits (167), Expect = 8.2e-12
Identity = 68/283 (24.03%), Postives = 117/283 (41.34%), Query Frame = 0


Query: 58  ITQILSIIDAAERQPWMNGLELLEDARENKHI---LSTDFEGIDILLGGGLREGQLTEIV 117
           I   +S I  A   P  +   LLE   EN+H+   L T  +G+D  L GG+  G LTE+V
Sbjct: 17  IRSAISFISEATSPPCQSARSLLEKKVENEHLSGHLPTHLKGLDDTLCGGIPFGVLTELV 76

Query: 118 GPSSSGKTQVCLRAAANVA-----TNYKAKVFYLDSGNSFSPQRI--SGFVNWKPGTALE 177
           GP   GK+Q C++ A + +          +V Y+D  + FS +R+   G  ++     L+
Sbjct: 77  GPPGIGKSQFCMKLALSASFPVAYGGLDGRVIYIDVESKFSSRRVIEMGLESFPEVFHLK 136

Query: 178 RTEQSMLQQVMSSISCHSVFNIFAMFDVLHQLEFNLRSQMGKGDRRVQLLIVDSISSLIT 237
              Q M  +++       V    ++ +    ++    S +     +V+LL++DS    +T
Sbjct: 137 GMAQEMAGRIL-------VLRPTSLANFTESIQELKNSIL---QNQVKLLVIDS----MT 196

Query: 238 PILGGSSSQGHALMISAG---TLLKKIAHEHNIAVLVTNHTVGGDRGTSK---------- 297
            +L G +  G       G   + LK +A    I ++VTN     +R  +           
Sbjct: 197 ALLSGENKPGAQRQPQLGWHISFLKSLAEFSRIPIVVTNQVRSQNRDETSQYSFQAKVKD 256

Query: 298 --------------PALGESWKSVPHVRLQLSRDAGSNVCQAS 304
                          ALG +W     +RL L   +G  + + +
Sbjct: 257 EFKDNTKTYDSHLVAALGINWAHAVTIRLVLEAKSGQRIIKVA 285

The following BLAST results are available for this feature:

BLAST of HG10001439 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038901758.1	3.9e-165	95.48	DNA repair protein RAD51 homolog 4 isoform X2 [Benincasa hispida]	[more]
XP_038901757.1	1.6e-163	94.57	DNA repair protein RAD51 homolog 4 isoform X1 [Benincasa hispida]	[more]
XP_031743457.1	7.4e-156	86.85	DNA repair protein RAD51 homolog 4 isoform X2 [Cucumis sativus]	[more]
XP_031743458.1	2.8e-155	86.85	DNA repair protein RAD51 homolog 4 isoform X3 [Cucumis sativus] >KGN47440.2 hypo...	[more]
XP_008448361.1	2.4e-154	90.00	PREDICTED: DNA repair protein RAD51 homolog 4 isoform X2 [Cucumis melo]	[more]

BLAST of HG10001439 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LQQ2	1.9e-98	58.97	DNA repair protein RAD51 homolog 4 OS=Arabidopsis thaliana OX=3702 GN=RAD51D PE=...	[more]
Q2HJ51	1.4e-35	35.64	DNA repair protein RAD51 homolog 4 OS=Bos taurus OX=9913 GN=RAD51D PE=2 SV=1	[more]
O75771	1.4e-35	35.29	DNA repair protein RAD51 homolog 4 OS=Homo sapiens OX=9606 GN=RAD51D PE=1 SV=1	[more]
O55230	3.7e-33	38.10	DNA repair protein RAD51 homolog 4 OS=Mus musculus OX=10090 GN=Rad51d PE=1 SV=1	[more]
Q1ZXF0	6.1e-28	30.40	Probable DNA repair protein RAD51 homolog 4 OS=Dictyostelium discoideum OX=44689...	[more]

BLAST of HG10001439 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCU0	7.7e-159	91.61	RECA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G302700 PE=4...	[more]
A0A1S3BJI2	1.1e-154	90.00	DNA repair protein RAD51 homolog 4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A6J1L7F6	7.0e-152	88.71	DNA repair protein RAD51 homolog 4 OS=Cucurbita maxima OX=3661 GN=LOC111499870 P...	[more]
A0A6J1G6S8	2.9e-150	87.74	DNA repair protein RAD51 homolog 4 OS=Cucurbita moschata OX=3662 GN=LOC111451356...	[more]
A0A1S3BIX1	2.9e-150	82.79	DNA repair protein RAD51 homolog 4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]

BLAST of HG10001439 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07745.1	1.4e-99	58.97	homolog of RAD51 D	[more]
AT1G07745.2	1.6e-87	58.30	homolog of RAD51 D	[more]
AT2G28560.1	8.2e-12	24.03	DNA repair (Rad51) family protein	[more]
AT2G28560.2	8.2e-12	24.03	DNA repair (Rad51) family protein	[more]
AT2G28560.3	8.2e-12	24.03	DNA repair (Rad51) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013632	DNA recombination and repair protein Rad51-like, C-terminal	PFAM	PF08423	Rad51	coord: 83..298 e-value: 7.8E-20 score: 71.2
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 72..316 e-value: 4.3E-49 score: 169.3
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 89..307
None	No IPR available	PANTHER	PTHR46457	DNA REPAIR PROTEIN RAD51 HOMOLOG 4	coord: 1..313
IPR020588	DNA recombination and repair protein RecA-like, ATP-binding domain	PROSITE	PS50162	RECA_2	coord: 86..265 score: 35.741943

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10001439.1	HG10001439.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
biological_process	GO:1900426	positive regulation of defense response to bacterium
biological_process	GO:0016444	somatic cell DNA recombination
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008094	ATP-dependent activity, acting on DNA
molecular_function	GO:0003677	DNA binding