HG10001357 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10001357
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Cdk-activating kinase assembly factor
Location	Chr09: 16381373 .. 16381630 (+)
RNA-Seq Expression	HG10001357
Synteny	HG10001357

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAACAAATGGAAGAAGGTGAAGATGGCTATTGGGAATGGTATGTGTCTTCATCTTCCTCAAGTCGTTGGGGATTCGACACACTCTAATACCTTTCCCACAACTTCCTCCTCTCAATCCCTTTCTCCTTTGCCTCCTACTTCCAATTGCCGCCAATCCACGCCGACCCATTCCTTCTCTACTCCCCGCGTTTCCAAATCCGGATCAAGGTCTTCTAAGGTCTCTCTCTTTCTAATTCTCAATTCCCCTGTTTGA

mRNA sequence

ATGGCAAACAAATGGAAGAAGGTGAAGATGGCTATTGGGAATGGTATGTGTCTTCATCTTCCTCAAGTCGTTGGGGATTCGACACACTCTAATACCTTTCCCACAACTTCCTCCTCTCAATCCCTTTCTCCTTTGCCTCCTACTTCCAATTGCCGCCAATCCACGCCGACCCATTCCTTCTCTACTCCCCGCGTTTCCAAATCCGGATCAAGGTCTTCTAAGGTCTCTCTCTTTCTAATTCTCAATTCCCCTGTTTGA

Coding sequence (CDS)

ATGGCAAACAAATGGAAGAAGGTGAAGATGGCTATTGGGAATGGTATGTGTCTTCATCTTCCTCAAGTCGTTGGGGATTCGACACACTCTAATACCTTTCCCACAACTTCCTCCTCTCAATCCCTTTCTCCTTTGCCTCCTACTTCCAATTGCCGCCAATCCACGCCGACCCATTCCTTCTCTACTCCCCGCGTTTCCAAATCCGGATCAAGGTCTTCTAAGGTCTCTCTCTTTCTAATTCTCAATTCCCCTGTTTGA

Protein sequence

MANKWKKVKMAIGNGMCLHLPQVVGDSTHSNTFPTTSSSQSLSPLPPTSNCRQSTPTHSFSTPRVSKSGSRSSKVSLFLILNSPV

Homology

[Close]

BLAST of HG10001357 vs. NCBI nr
Match: XP_038900527.1 (E3 ubiquitin-protein ligase WAV3-like [Benincasa hispida])

HSP 1 Score: 134.4 bits (337), Expect = 4.5e-28
Identity = 69/83 (83.13%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 1  MANKWKKVKMAIGNGMCLHLPQVVGDSTHSNTFPTTSSSQSLSPLPPTSNCRQSTPTHSF 60
          MANKWKKVKMAIGNGMCLHLPQV GDST S T P TSSSQSLSPLPPTSNCRQSTPTHSF
Sbjct: 1  MANKWKKVKMAIGNGMCLHLPQVAGDSTPSTTLPPTSSSQSLSPLPPTSNCRQSTPTHSF 60

Query: 61 STPRVSKSGSRSSKVSLFLILNS 84
          S+PRVSKSGSRSSK +  + L +
Sbjct: 61 SSPRVSKSGSRSSKRTCAICLTT 83

[Close]

BLAST of HG10001357 vs. NCBI nr
Match: XP_004145751.1 (E3 ubiquitin-protein ligase WAV3 isoform X1 [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 3.4e-23
Identity = 62/83 (74.70%), Postives = 69/83 (83.13%), Query Frame = 0


Query: 1  MANKWKKVKMAIGNGMCLHLPQVVGDSTHSNTFPTTSSSQSLSPLPPTSNCRQSTPTHSF 60
          MANKW+KVKMA+GNG+CLHLPQV GDS       TTSS+QSLSPLPP SNCRQSTPTHSF
Sbjct: 1  MANKWRKVKMALGNGLCLHLPQVAGDS-------TTSSTQSLSPLPPNSNCRQSTPTHSF 60

Query: 61 STPRVSKSGSRSSKVSLFLILNS 84
          STPRVSKSGSRSSK +  + L +
Sbjct: 61 STPRVSKSGSRSSKRTCAICLTT 76

[Close]

BLAST of HG10001357 vs. NCBI nr
Match: KAA0035356.1 (uncharacterized protein E6C27_scaffold228G001600 [Cucumis melo var. makuwa] >TYK14282.1 uncharacterized protein E5676_scaffold84G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 117.9 bits (294), Expect = 4.4e-23
Identity = 61/77 (79.22%), Postives = 67/77 (87.01%), Query Frame = 0


Query: 1  MANKWKKVKMAIGNGMCLHLPQVVGDSTHSNTFPTTSSSQSLSPLPPTSNCRQSTPTHSF 60
          M+NKW+KVKMA+GNGMCLHLPQV GDS       TTS++QS SPLPPTSNCRQSTPTHS 
Sbjct: 1  MSNKWRKVKMALGNGMCLHLPQVAGDS-------TTSTTQSFSPLPPTSNCRQSTPTHSV 60

Query: 61 STPRVSKSGSRSSKVSL 78
          S+PRVSKSGSRSSKVSL
Sbjct: 61 SSPRVSKSGSRSSKVSL 70

[Close]

BLAST of HG10001357 vs. NCBI nr
Match: XP_008463968.1 (PREDICTED: uncharacterized protein LOC103501961 [Cucumis melo])

HSP 1 Score: 114.4 bits (285), Expect = 4.9e-22
Identity = 60/83 (72.29%), Postives = 68/83 (81.93%), Query Frame = 0


Query: 1  MANKWKKVKMAIGNGMCLHLPQVVGDSTHSNTFPTTSSSQSLSPLPPTSNCRQSTPTHSF 60
          M+NKW+KVKMA+GNGMCLHLPQV GDS       TTS++QS SPLPPTSNCRQSTPTHS 
Sbjct: 1  MSNKWRKVKMALGNGMCLHLPQVAGDS-------TTSTTQSFSPLPPTSNCRQSTPTHSV 60

Query: 61 STPRVSKSGSRSSKVSLFLILNS 84
          S+PRVSKSGSRSSK S  + L +
Sbjct: 61 SSPRVSKSGSRSSKRSCAICLTT 76

[Close]

BLAST of HG10001357 vs. NCBI nr
Match: XP_022986144.1 (uncharacterized protein LOC111483976 [Cucurbita maxima])

HSP 1 Score: 97.1 bits (240), Expect = 8.0e-17
Identity = 50/81 (61.73%), Postives = 65/81 (80.25%), Query Frame = 0


Query: 3  NKWKKVKMAIGNGMCLHLPQVVGDSTHSNTFPTTSSSQSLSPLPPTSNCRQSTPTHSFST 62
          +KWKKVKMA+GNGMCLH+P+V GDS  SN+     SS+S+SP+  +SNCRQSTPTHS ++
Sbjct: 4  SKWKKVKMALGNGMCLHVPRVAGDSMPSNSL-APRSSESVSPMGRSSNCRQSTPTHSLAS 63

Query: 63 PRVSKSGSRSSKVSLFLILNS 84
          PRVSK+GSRSSK +  + L +
Sbjct: 64 PRVSKTGSRSSKRTCAICLTT 83

[Close]

BLAST of HG10001357 vs. ExPASy TrEMBL
Match: A0A0A0KDB9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G146940 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.6e-23
Identity = 62/83 (74.70%), Postives = 69/83 (83.13%), Query Frame = 0


Query: 1  MANKWKKVKMAIGNGMCLHLPQVVGDSTHSNTFPTTSSSQSLSPLPPTSNCRQSTPTHSF 60
          MANKW+KVKMA+GNG+CLHLPQV GDS       TTSS+QSLSPLPP SNCRQSTPTHSF
Sbjct: 1  MANKWRKVKMALGNGLCLHLPQVAGDS-------TTSSTQSLSPLPPNSNCRQSTPTHSF 60

Query: 61 STPRVSKSGSRSSKVSLFLILNS 84
          STPRVSKSGSRSSK +  + L +
Sbjct: 61 STPRVSKSGSRSSKRTCAICLTT 76

[Close]

BLAST of HG10001357 vs. ExPASy TrEMBL
Match: A0A5A7SZJ2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84G00040 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.1e-23
Identity = 61/77 (79.22%), Postives = 67/77 (87.01%), Query Frame = 0


Query: 1  MANKWKKVKMAIGNGMCLHLPQVVGDSTHSNTFPTTSSSQSLSPLPPTSNCRQSTPTHSF 60
          M+NKW+KVKMA+GNGMCLHLPQV GDS       TTS++QS SPLPPTSNCRQSTPTHS 
Sbjct: 1  MSNKWRKVKMALGNGMCLHLPQVAGDS-------TTSTTQSFSPLPPTSNCRQSTPTHSV 60

Query: 61 STPRVSKSGSRSSKVSL 78
          S+PRVSKSGSRSSKVSL
Sbjct: 61 SSPRVSKSGSRSSKVSL 70

[Close]

BLAST of HG10001357 vs. ExPASy TrEMBL
Match: A0A1S3CKX1 (uncharacterized protein LOC103501961 OS=Cucumis melo OX=3656 GN=LOC103501961 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.4e-22
Identity = 60/83 (72.29%), Postives = 68/83 (81.93%), Query Frame = 0


Query: 1  MANKWKKVKMAIGNGMCLHLPQVVGDSTHSNTFPTTSSSQSLSPLPPTSNCRQSTPTHSF 60
          M+NKW+KVKMA+GNGMCLHLPQV GDS       TTS++QS SPLPPTSNCRQSTPTHS 
Sbjct: 1  MSNKWRKVKMALGNGMCLHLPQVAGDS-------TTSTTQSFSPLPPTSNCRQSTPTHSV 60

Query: 61 STPRVSKSGSRSSKVSLFLILNS 84
          S+PRVSKSGSRSSK S  + L +
Sbjct: 61 SSPRVSKSGSRSSKRSCAICLTT 76

[Close]

BLAST of HG10001357 vs. ExPASy TrEMBL
Match: A0A6J1JF95 (uncharacterized protein LOC111483976 OS=Cucurbita maxima OX=3661 GN=LOC111483976 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.9e-17
Identity = 50/81 (61.73%), Postives = 65/81 (80.25%), Query Frame = 0


Query: 3  NKWKKVKMAIGNGMCLHLPQVVGDSTHSNTFPTTSSSQSLSPLPPTSNCRQSTPTHSFST 62
          +KWKKVKMA+GNGMCLH+P+V GDS  SN+     SS+S+SP+  +SNCRQSTPTHS ++
Sbjct: 4  SKWKKVKMALGNGMCLHVPRVAGDSMPSNSL-APRSSESVSPMGRSSNCRQSTPTHSLAS 63

Query: 63 PRVSKSGSRSSKVSLFLILNS 84
          PRVSK+GSRSSK +  + L +
Sbjct: 64 PRVSKTGSRSSKRTCAICLTT 83

[Close]

BLAST of HG10001357 vs. ExPASy TrEMBL
Match: A0A6J1H011 (uncharacterized protein LOC111459211 OS=Cucurbita moschata OX=3662 GN=LOC111459211 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.2e-12
Identity = 44/74 (59.46%), Postives = 54/74 (72.97%), Query Frame = 0


Query: 1  MANKWKKVKMAIGNGMCLHLPQVVGDSTHSNTFPTTSSSQSLSPLPPTSNCRQSTPTHSF 60
          M   WKK+KMA G  MCLHLP+V GDST S+      SS+++SP+   SNCRQS+P HS 
Sbjct: 1  MTGTWKKLKMAFGTRMCLHLPRVSGDSTPSSNV-APMSSEAVSPMGSASNCRQSSPIHSS 60

Query: 61 STPRVSKSGSRSSK 75
          S+ RVSKSGSRSS+
Sbjct: 61 SSSRVSKSGSRSSR 73

[Close]

BLAST of HG10001357 vs. TAIR 10
Match: AT3G54780.3 (Zinc finger (C3HC4-type RING finger) family protein )

HSP 1 Score: 42.4 bits (98), Expect = 2.2e-04
Identity = 31/85 (36.47%), Postives = 47/85 (55.29%), Query Frame = 0


Query: 1  MANKWKKVKMAIGNGMCLHLPQVVGDSTHS---NTFPTTSSSQSLSPLPPTSNCRQSTPT 60
          M +KWKK+K+A+   +C +LP+ + +   S   N+  T S +  LSPL         TPT
Sbjct: 1  MVSKWKKMKLALSLNLCNYLPRTLEEEPPSLALNSAETLSDAALLSPLN-----WPMTPT 60

Query: 61 HSFSTPRVSKSGSRSSKVSLFLILN 83
           S    R+S+S S+SSK +  + LN
Sbjct: 61 PSSYRRRLSRSSSKSSKQTCSICLN 80

[Close]

BLAST of HG10001357 vs. TAIR 10
Match: AT5G60710.1 (Zinc finger (C3HC4-type RING finger) family protein )

HSP 1 Score: 42.0 bits (97), Expect = 2.9e-04
Identity = 29/73 (39.73%), Postives = 44/73 (60.27%), Query Frame = 0


Query: 1  MANKWKKVKMAIGNGMCLHLPQVVGDSTHSNTFPTTSSSQSLSPLPPTSNCRQSTPTHSF 60
          M +KW+K K+A+G  +CL++P+ + DS+     P   S  ++S L P    R STPT S 
Sbjct: 1  MGSKWRKAKVALGLNLCLYVPKTLEDSS-----PPRRSDDAVS-LSPVIVQRPSTPTPSS 60

Query: 61 STPRVSKSGSRSS 74
          S  R+ +S S+SS
Sbjct: 61 SGLRLPRSMSKSS 67

The following BLAST results are available for this feature:

BLAST of HG10001357 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900527.1	4.5e-28	83.13	E3 ubiquitin-protein ligase WAV3-like [Benincasa hispida]	[more]
XP_004145751.1	3.4e-23	74.70	E3 ubiquitin-protein ligase WAV3 isoform X1 [Cucumis sativus]	[more]
KAA0035356.1	4.4e-23	79.22	uncharacterized protein E6C27_scaffold228G001600 [Cucumis melo var. makuwa] >TYK...	[more]
XP_008463968.1	4.9e-22	72.29	PREDICTED: uncharacterized protein LOC103501961 [Cucumis melo]	[more]
XP_022986144.1	8.0e-17	61.73	uncharacterized protein LOC111483976 [Cucurbita maxima]	[more]

BLAST of HG10001357 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10001357 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDB9	1.6e-23	74.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G146940 PE=4 SV=1	[more]
A0A5A7SZJ2	2.1e-23	79.22	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CKX1	2.4e-22	72.29	uncharacterized protein LOC103501961 OS=Cucumis melo OX=3656 GN=LOC103501961 PE=...	[more]
A0A6J1JF95	3.9e-17	61.73	uncharacterized protein LOC111483976 OS=Cucurbita maxima OX=3661 GN=LOC111483976...	[more]
A0A6J1H011	2.2e-12	59.46	uncharacterized protein LOC111459211 OS=Cucurbita moschata OX=3662 GN=LOC1114592...	[more]

BLAST of HG10001357 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54780.3	2.2e-04	36.47	Zinc finger (C3HC4-type RING finger) family protein	[more]
AT5G60710.1	2.9e-04	39.73	Zinc finger (C3HC4-type RING finger) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10001357.1	HG10001357.1	mRNA