HG10001258 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10001258
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	heterogeneous nuclear ribonucleoprotein Q
Location	Chr09: 15474886 .. 15478381 (-)
RNA-Seq Expression	HG10001258
Synteny	HG10001258

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAAGGGGAAAGGGAAATGCTTCATCTACTGCTAGACCAGTTGAACCTGAAAAGCAGAATGAATCTGAAAAGCCAGGAGACTCTGATGAGAGGGTAGATCTCGATGTTGATAATGATCCTGAGGAGGTAATGGAAGAAGATGTTGAGTACGAAGAAGTAGAAGAGGAGGAGGATGTGGAAGAAATAGAAGAAGTTGAGGAAGAGGAGGAAGAGGAGGAGGAAGAGGAGGAGGGTGAGGAAGAAGATGTTGAAGAAGTGGAGGATGATGGAAATAATGACAATGGAATCAATGCCCAAAATGAAATTAGTAATGATGAAGATGAAAAGAAAAAACATGCTGAGCTTCTCGCCCTACCTCCTCATGGTTCTGAAGTATATGTTGGTGGTATTCCTCAAGATTCTTCTGAAGAGGATTTGAGGACTTTTTGTGAATCCATAGGAGAAGTTACAGAGGTAAGCTCAGTTATATTTGTTCTATATTCAGATTATGCCCTTTTCACAGGGACTAATGGCATTTTGCTTCAAGCAGGTTCGCGTTATGAGAAGTAAGGAATCAAATGAGAATAAGGGATTTGCATTTGTTACCTACAGAGGTGTAGAGTTGGCTTCTAAAGCAATTGATGAGCTGAATAACACTGAATTCAAGGTTTTCTTTTTTACTTCTGTTCATAGTTCCCACGTCAATAAGTTGATAGATTAAGTGCGAAGTTGGAAGCTAATGTTGAAACTTTGTCGATCCTTTGAAATCTTTTTAGAATCTTCCATGTCTTTTCTTCCCAATATCCTTTTTCAGTATTTTTATCATCTGGTTCTCTGTGCTTATGCATGTAACATAGGGGAAGAAGATAAAATGTTCATCATCTCAAGCAAAGCACCGTTTGTTCATCGGTAATGTTCCCAGGAGCTGGGGCGAGGAAGATCTTAGGAAGGTTGTGACAGACATTGGACCTGGAGTTACTGCTGTGGAACTAGTAAAGGTTAGCATGACAGAATTTTCATGTTGGATCTAGCTACCTCTGTTCTATGTTGTATTCTTGTTCCATAATTATTGTACTACTCTTCTCTTTCCAATGACTTTATAAGTTTGTGCAACATAAGCTGGTGTCTAGTTTCTTAATTTGATGTTACACAATTTTTGGTTGCAGGATATGAAGAATACTAGCAATAACAGGGGTTTTGCTTTTATTGACTACTATAATCATGCATGTGCTGAGTACTCAAGGCAGAAGATGATGAACCCAAAATTTAAGCTAGATGATAATGCTCCAACTGTTAGCTGGGCAGACCCTAAAAATGCCGACTCATCTGCTGCTTCACAGGTCTTGCTCAATTGCTTTTAGATTTTGCACGACTAGTCCATTCAACATGCAGGTTTCTTTTTTTTGGTTCATGTTATAAAATAAGTAATAAATTGCTTTAAATAAGATATCTATAACTCAGATTGTTGTCAAATAAACAAGTTTATGGGTTAATTGTACAATGGTTTTTTTATTTATAAAATAGCAGCTAATGAATTTCATGTAATTATGTATAAGCTTCTAATGGGTATGAACTTTCAAATATACATATATTTGTTCAAGATCTCATTATTTGTATATGTAAGTTTATCAACAAACAAAAGCCAAACGGTCAACATAGTAATTAAATATTTTTTGTAAAGCTTTTCTAATCTAACAACCAACTTTTCAGGTTCATTGAGGCAGTTGTCTCAATTTTTCTTTCCTGATAATCAAAATGACTAATGCAAAATTTGTGACATGTCATAACTAGTCCTTTGCACCTTAGAGTTGGTATTTGTATCCATGGCCTTAGTTGATTATTGACTGAAGATGGGGTTTGGGAAGTTCTGTTATATTGAACTTCAGACTTTATCTTTGAGTGATCTGTTCTCAATAATAGTTTTTTCCCCTATCTTTTTTGGTCAATACAGGTGAAGGCAGTTTATGTCAAGAATTTGCCAAAAAATGTAACACAGGAGCAGTTGAAAAAGCTATTTGACCATCATGGGAAAATTACAAAGGTGGTTTTGCCTCCTGCAAAGTCTGGACAAGAGAGGAATAGAATTGGTTTTGTACATTTTTCGGAGAGGTCCAGTGCTATGAAGGCTTTAAAAAATACTGAAAAATATGAATTGGATGGTGATTATTTCTCCAGAAGCTCTTCTAAAATTTTTCATTTTACCCATCACCAAAGTGAGGCTGGTCTTTGATATCCATATTTTGATGCTTATATATCAGGTCAAGTTTTGGAGTGTTCTCTTGCAAAGCCACAGGCAGATCAGAAGTCTGGAGGATCGAATAGCCAGAAGTCTGGATTGCTTCCTAACTATCCACCTCGTGTTGGATATGGATTTGTTGGGGGTGCTTATGGTGCTGTAAATGCAGGATATGGTGCTTCTGGTTTTGGTCAGGTAAAATGTTTGTGCATTTGTTATCTTCTTCATGGGTTTTAAACTTGGTATGCTCATGTCTTGAATCTTGATAAGATCAACCTAGCCATCTCCTTTTAAAACCCTTTGTCTCGAGAAGTGGCTAGTTGGCAAAGAGTAAAATATAATTGAAGTTCAGAAGAATTCAGTGGTTTTGTGATTGTTACTTGCTAACGCAAGGATACAATACAACAGCATTTGATTTCATCCTTCTAGTTCATTGGGAGGGACCATTTGATGTTCTTTTAAATCATTCAAACTGAAAACTTTCTGGCTTCCTTTTAATTCGTTAGCTTTAGAGATTTTCCCCCCTCTCCTCTTGAGAGATTTGGAAAAAAAAATACCTCAGTACGATGACTATTTATCACCTTGATAATCTATGTTTGGCTAAAATTAGATTGATTGTGCTGTTGCATTTGCTTGTGTGCCTTGGACGTTTGATTTAAAGCACCTTTTACTTTTGAAATTAGAAACGAAAAATCTGATTGAATTGCATTTGAGCTGCAGCCGTTGATATATGGAAGAGGACCAACTCCTGCTGGGATGGCAATGATGCCAATGTTGCTACCTGATGGACGGATTGGCTATGTCTTGTAAGCTCATACATCTTTTTCTGCACTTTCAGCTATATTATACCTGTATAATAATCTGATTGTAGTGGACAATTCTTTTATTCGTTTTACTCCTGGGATTTTCTTAAAGTATAGGCTTGAAATGGAATGGTATAAATCCTGTTATAGAAGTCCTATCTTATAAAGTTTGCCTTTTACTTCATTTCTCTAGTTGAGGCTATTTGAAAACTACAATCCATCTTAGAGTAAATTGCTTCATCTAATACTTCAGCTTCTGCTCTGATGGCTTATGCTGAAAGCTACCGTATCTCCTTGCAGGCAACAACCAGGATCACAAATGCTAACCCCTCCACCACATCCAAGAAGTGGTGGCGGCGGCGGCGGAGGCAGTGGTGGCGGAAGTGGCAGTAAGAATGGTGGCAGTTCTAGTAGAGGGAGACATTCACATGACAGTGGCCATGGTGGCCATGGTCGCAGGTATCGCCCATATTAA

mRNA sequence

ATGCCAAGGGGAAAGGGAAATGCTTCATCTACTGCTAGACCAGTTGAACCTGAAAAGCAGAATGAATCTGAAAAGCCAGGAGACTCTGATGAGAGGGTAGATCTCGATGTTGATAATGATCCTGAGGAGGTAATGGAAGAAGATGTTGAGTACGAAGAAGTAGAAGAGGAGGAGGATGTGGAAGAAATAGAAGAAGTTGAGGAAGAGGAGGAAGAGGAGGAGGAAGAGGAGGAGGGTGAGGAAGAAGATGTTGAAGAAGTGGAGGATGATGGAAATAATGACAATGGAATCAATGCCCAAAATGAAATTAGTAATGATGAAGATGAAAAGAAAAAACATGCTGAGCTTCTCGCCCTACCTCCTCATGGTTCTGAAGTATATGTTGGTGGTATTCCTCAAGATTCTTCTGAAGAGGATTTGAGGACTTTTTGTGAATCCATAGGAGAAGTTACAGAGATTATGCCCTTTTCACAGGGACTAATGGCATTTTGCTTCAAGCAGGTTCGCGTTATGAGAAGTAAGGAATCAAATGAGAATAAGGGATTTGCATTTGTTACCTACAGAGGTGTAGAGTTGGCTTCTAAAGCAATTGATGAGCTGAATAACACTGAATTCAAGGGGAAGAAGATAAAATGTTCATCATCTCAAGCAAAGCACCGTTTGTTCATCGGTAATGTTCCCAGGAGCTGGGGCGAGGAAGATCTTAGGAAGGTTGTGACAGACATTGGACCTGGAGTTACTGCTGTGGAACTAGTAAAGGATATGAAGAATACTAGCAATAACAGGGGTTTTGCTTTTATTGACTACTATAATCATGCATGTGCTGAGTACTCAAGGCAGAAGATGATGAACCCAAAATTTAAGCTAGATGATAATGCTCCAACTGTTAGCTGGGCAGACCCTAAAAATGCCGACTCATCTGCTGCTTCACAGGTGAAGGCAGTTTATGTCAAGAATTTGCCAAAAAATGTAACACAGGAGCAGTTGAAAAAGCTATTTGACCATCATGGGAAAATTACAAAGGTGGTTTTGCCTCCTGCAAAGTCTGGACAAGAGAGGAATAGAATTGGTTTTGTACATTTTTCGGAGAGGTCCAGTGCTATGAAGGCTTTAAAAAATACTGAAAAATATGAATTGGATGGTCAAGTTTTGGAGTGTTCTCTTGCAAAGCCACAGGCAGATCAGAAGTCTGGAGGATCGAATAGCCAGAAGTCTGGATTGCTTCCTAACTATCCACCTCGTGTTGGATATGGATTTGTTGGGGGTGCTTATGGTGCTGTAAATGCAGGATATGGTGCTTCTGGTTTTGGTCAGCCGTTGATATATGGAAGAGGACCAACTCCTGCTGGGATGGCAATGATGCCAATGTTGCTACCTGATGGACGGATTGGCTATGTCTTGCAACAACCAGGATCACAAATGCTAACCCCTCCACCACATCCAAGAAGTGGTGGCGGCGGCGGCGGAGGCAGTGGTGGCGGAAGTGGCAGTAAGAATGGTGGCAGTTCTAGTAGAGGGAGACATTCACATGACAGTGGCCATGGTGGCCATGGTCGCAGGTATCGCCCATATTAA

Coding sequence (CDS)

ATGCCAAGGGGAAAGGGAAATGCTTCATCTACTGCTAGACCAGTTGAACCTGAAAAGCAGAATGAATCTGAAAAGCCAGGAGACTCTGATGAGAGGGTAGATCTCGATGTTGATAATGATCCTGAGGAGGTAATGGAAGAAGATGTTGAGTACGAAGAAGTAGAAGAGGAGGAGGATGTGGAAGAAATAGAAGAAGTTGAGGAAGAGGAGGAAGAGGAGGAGGAAGAGGAGGAGGGTGAGGAAGAAGATGTTGAAGAAGTGGAGGATGATGGAAATAATGACAATGGAATCAATGCCCAAAATGAAATTAGTAATGATGAAGATGAAAAGAAAAAACATGCTGAGCTTCTCGCCCTACCTCCTCATGGTTCTGAAGTATATGTTGGTGGTATTCCTCAAGATTCTTCTGAAGAGGATTTGAGGACTTTTTGTGAATCCATAGGAGAAGTTACAGAGATTATGCCCTTTTCACAGGGACTAATGGCATTTTGCTTCAAGCAGGTTCGCGTTATGAGAAGTAAGGAATCAAATGAGAATAAGGGATTTGCATTTGTTACCTACAGAGGTGTAGAGTTGGCTTCTAAAGCAATTGATGAGCTGAATAACACTGAATTCAAGGGGAAGAAGATAAAATGTTCATCATCTCAAGCAAAGCACCGTTTGTTCATCGGTAATGTTCCCAGGAGCTGGGGCGAGGAAGATCTTAGGAAGGTTGTGACAGACATTGGACCTGGAGTTACTGCTGTGGAACTAGTAAAGGATATGAAGAATACTAGCAATAACAGGGGTTTTGCTTTTATTGACTACTATAATCATGCATGTGCTGAGTACTCAAGGCAGAAGATGATGAACCCAAAATTTAAGCTAGATGATAATGCTCCAACTGTTAGCTGGGCAGACCCTAAAAATGCCGACTCATCTGCTGCTTCACAGGTGAAGGCAGTTTATGTCAAGAATTTGCCAAAAAATGTAACACAGGAGCAGTTGAAAAAGCTATTTGACCATCATGGGAAAATTACAAAGGTGGTTTTGCCTCCTGCAAAGTCTGGACAAGAGAGGAATAGAATTGGTTTTGTACATTTTTCGGAGAGGTCCAGTGCTATGAAGGCTTTAAAAAATACTGAAAAATATGAATTGGATGGTCAAGTTTTGGAGTGTTCTCTTGCAAAGCCACAGGCAGATCAGAAGTCTGGAGGATCGAATAGCCAGAAGTCTGGATTGCTTCCTAACTATCCACCTCGTGTTGGATATGGATTTGTTGGGGGTGCTTATGGTGCTGTAAATGCAGGATATGGTGCTTCTGGTTTTGGTCAGCCGTTGATATATGGAAGAGGACCAACTCCTGCTGGGATGGCAATGATGCCAATGTTGCTACCTGATGGACGGATTGGCTATGTCTTGCAACAACCAGGATCACAAATGCTAACCCCTCCACCACATCCAAGAAGTGGTGGCGGCGGCGGCGGAGGCAGTGGTGGCGGAAGTGGCAGTAAGAATGGTGGCAGTTCTAGTAGAGGGAGACATTCACATGACAGTGGCCATGGTGGCCATGGTCGCAGGTATCGCCCATATTAA

Protein sequence

MPRGKGNASSTARPVEPEKQNESEKPGDSDERVDLDVDNDPEEVMEEDVEYEEVEEEEDVEEIEEVEEEEEEEEEEEEGEEEDVEEVEDDGNNDNGINAQNEISNDEDEKKKHAELLALPPHGSEVYVGGIPQDSSEEDLRTFCESIGEVTEIMPFSQGLMAFCFKQVRVMRSKESNENKGFAFVTYRGVELASKAIDELNNTEFKGKKIKCSSSQAKHRLFIGNVPRSWGEEDLRKVVTDIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDDNAPTVSWADPKNADSSAASQVKAVYVKNLPKNVTQEQLKKLFDHHGKITKVVLPPAKSGQERNRIGFVHFSERSSAMKALKNTEKYELDGQVLECSLAKPQADQKSGGSNSQKSGLLPNYPPRVGYGFVGGAYGAVNAGYGASGFGQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGSQMLTPPPHPRSGGGGGGGSGGGSGSKNGGSSSRGRHSHDSGHGGHGRRYRPY

Homology

[Close]

BLAST of HG10001258 vs. NCBI nr
Match: XP_038902706.1 (heterogeneous nuclear ribonucleoprotein Q [Benincasa hispida] >XP_038902707.1 heterogeneous nuclear ribonucleoprotein Q [Benincasa hispida] >XP_038902708.1 heterogeneous nuclear ribonucleoprotein Q [Benincasa hispida])

HSP 1 Score: 913.7 bits (2360), Expect = 7.3e-262
Identity = 495/527 (93.93%), Postives = 503/527 (95.45%), Query Frame = 0


Query: 1   MPRGKGNASSTARPVEPEKQNESEKPGDSDERVDLDVDNDPEEVMEEDVEYEEVEEEEDV 60
           MPRGKGNASSTARPVEPEKQNE EKPGDSDERVDL+VDNDPEEVMEEDVEYEEVEEEE+V
Sbjct: 1   MPRGKGNASSTARPVEPEKQNEPEKPGDSDERVDLEVDNDPEEVMEEDVEYEEVEEEEEV 60

Query: 61  EEIEEVEEEEEEEEEEEEGEEEDVEEVEDDGNNDNGINAQNEISNDEDEKKKHAELLALP 120
           EEIEEVEEEEEEEEEEEEGEEEDVEEVEDDG N+NGINAQNEISNDEDEKKKHAELLALP
Sbjct: 61  EEIEEVEEEEEEEEEEEEGEEEDVEEVEDDGTNENGINAQNEISNDEDEKKKHAELLALP 120

Query: 121 PHGSEVYVGGIPQDSSEEDLRTFCESIGEVTEIMPFSQGLMAFCFKQVRVMRSKESNENK 180
           PHGSEVYVGGIPQDSSEEDLR+FCESIGEVTE               VR+MRSKESNENK
Sbjct: 121 PHGSEVYVGGIPQDSSEEDLRSFCESIGEVTE---------------VRIMRSKESNENK 180

Query: 181 GFAFVTYRGVELASKAIDELNNTEFKGKKIKCSSSQAKHRLFIGNVPRSWGEEDLRKVVT 240
           GFAFVTYR VELASKAIDELNNTEFKGKKIKCSSSQAKHRLFIGNVPRSWGEEDLRKVVT
Sbjct: 181 GFAFVTYRSVELASKAIDELNNTEFKGKKIKCSSSQAKHRLFIGNVPRSWGEEDLRKVVT 240

Query: 241 DIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDDNAPTVSWAD 300
           DIGPGVTAVELVKDMKNTSNNRGFAFIDYYNH+CAEYSRQKMMNPKFKLDDNAPTVSWAD
Sbjct: 241 DIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHSCAEYSRQKMMNPKFKLDDNAPTVSWAD 300

Query: 301 PKNADSSAASQVKAVYVKNLPKNVTQEQLKKLFDHHGKITKVVLPPAKSGQERNRIGFVH 360
           PKNADSSAASQVKAVYVKNLPKNVTQEQLKKLFDHHGKITKVVLPPAKSGQE+NRIGFVH
Sbjct: 301 PKNADSSAASQVKAVYVKNLPKNVTQEQLKKLFDHHGKITKVVLPPAKSGQEKNRIGFVH 360

Query: 361 FSERSSAMKALKNTEKYELDGQVLECSLAKPQADQKSGGSNSQKSGLLPNYPPRVGYGFV 420
           FSERSSAMKALKNTEKYELDGQVLECSLAKPQADQKSGGSNSQKSGLLPNYPPRVGYGFV
Sbjct: 361 FSERSSAMKALKNTEKYELDGQVLECSLAKPQADQKSGGSNSQKSGLLPNYPPRVGYGFV 420

Query: 421 GGAYGAVNAGYGASGFGQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGSQMLTPPPH 480
           GGAYG VNAGYGASGFGQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGSQMLTPPPH
Sbjct: 421 GGAYGGVNAGYGASGFGQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGSQMLTPPPH 480

Query: 481 PRSGGGGGGGSGGGSGSKNGGSSSRGRHSHD---SGHGGHGRRYRPY 525
           PRSGGGGGGG GGGSGSK+GGSSSRGRHSHD    GHGGHGRRYRPY
Sbjct: 481 PRSGGGGGGGGGGGSGSKSGGSSSRGRHSHDGGHGGHGGHGRRYRPY 512

[Close]

BLAST of HG10001258 vs. NCBI nr
Match: XP_031744156.1 (heterogeneous nuclear ribonucleoprotein Q [Cucumis sativus] >KGN48032.1 hypothetical protein Csa_003161 [Cucumis sativus])

HSP 1 Score: 904.4 bits (2336), Expect = 4.5e-259
Identity = 491/528 (92.99%), Postives = 500/528 (94.70%), Query Frame = 0


Query: 1   MPRGKGNASSTARPVEPEKQNESEKPGDSDERVDLDVDNDPEEVMEEDVEYEEVEEEEDV 60
           MPRGKGNASSTARPVEPEKQNE EKPGDSDERVDLDVDNDPEEVMEEDVEYEEVEEEE+V
Sbjct: 1   MPRGKGNASSTARPVEPEKQNEPEKPGDSDERVDLDVDNDPEEVMEEDVEYEEVEEEEEV 60

Query: 61  EEIEEVEEEEEEEEEEEEGEEEDVEEVEDDGNNDNGINAQNEISNDEDEKKKHAELLALP 120
           EEIEEVEEEEEEEE+EEEG+EEDVEEVEDDG NDNGIN+QNE  NDEDE KKHAELLALP
Sbjct: 61  EEIEEVEEEEEEEEDEEEGDEEDVEEVEDDGTNDNGINSQNETINDEDETKKHAELLALP 120

Query: 121 PHGSEVYVGGIPQDSSEEDLRTFCESIGEVTEIMPFSQGLMAFCFKQVRVMRSKESNENK 180
           PHGSEVYVGGIPQDSSE+DLR FCESIGEVTE               VRVMRSKESNENK
Sbjct: 121 PHGSEVYVGGIPQDSSEDDLRRFCESIGEVTE---------------VRVMRSKESNENK 180

Query: 181 GFAFVTYRGVELASKAIDELNNTEFKGKKIKCSSSQAKHRLFIGNVPRSWGEEDLRKVVT 240
           GFAFVT+R VELASKAIDELNNTEFKGKKIKCSSSQAKHRLFIGNVPRSWGEEDL+KVVT
Sbjct: 181 GFAFVTFRSVELASKAIDELNNTEFKGKKIKCSSSQAKHRLFIGNVPRSWGEEDLKKVVT 240

Query: 241 DIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDDNAPTVSWAD 300
           +IGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDDNAPTVSWAD
Sbjct: 241 EIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDDNAPTVSWAD 300

Query: 301 PKNADSSAASQVKAVYVKNLPKNVTQEQLKKLFDHHGKITKVVLPPAKSGQERNRIGFVH 360
           PKNADSSAASQVKAVYVKNLPKNVTQEQLKKLFDHHGKITKVVLPPAKSGQE+NRIGFVH
Sbjct: 301 PKNADSSAASQVKAVYVKNLPKNVTQEQLKKLFDHHGKITKVVLPPAKSGQEKNRIGFVH 360

Query: 361 FSERSSAMKALKNTEKYELDGQVLECSLAKPQADQKSGGSNSQKSGLLPNYPPRVGYGFV 420
           FSERSSAMKALKNTEKYELDGQVLECSLAKPQADQKSGGSNSQKSGLLPNYPPRVGYGFV
Sbjct: 361 FSERSSAMKALKNTEKYELDGQVLECSLAKPQADQKSGGSNSQKSGLLPNYPPRVGYGFV 420

Query: 421 GGAYGAVNAGYGASGFGQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGSQMLTPPPH 480
           GGAYGAVNAGYG SGFGQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGSQMLTPPPH
Sbjct: 421 GGAYGAVNAGYGGSGFGQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGSQMLTPPPH 480

Query: 481 PRSGGGGGGGSGGGSGSKNGGSSSRGRHSHDS----GHGGHGRRYRPY 525
           PRSGGGG GGSGGGSGSKNGGSSSRGRHSHDS    GHGGHGRRYRPY
Sbjct: 481 PRSGGGGSGGSGGGSGSKNGGSSSRGRHSHDSGHGGGHGGHGRRYRPY 513

[Close]

BLAST of HG10001258 vs. NCBI nr
Match: XP_008449579.1 (PREDICTED: nucleolin [Cucumis melo] >XP_008449580.1 PREDICTED: nucleolin [Cucumis melo])

HSP 1 Score: 899.8 bits (2324), Expect = 1.1e-257
Identity = 492/532 (92.48%), Postives = 500/532 (93.98%), Query Frame = 0


Query: 1   MPRGKGNASSTARPVEPEKQNESEKPGDSDERVDLDVDNDPEEVMEEDVEYEEVEEEEDV 60
           MPRGKGNASSTARPVEPEKQNE EKPGDSDERVDLDVDNDPEEVMEEDVEYEEVEEEE+V
Sbjct: 1   MPRGKGNASSTARPVEPEKQNEPEKPGDSDERVDLDVDNDPEEVMEEDVEYEEVEEEEEV 60

Query: 61  EEIEEVEEEEEEEEEEEEGEEEDVEEVEDDGNNDNGINAQNEISNDEDEKKKHAELLALP 120
           EEIEEVEEEEEEEEEEEEG+EEDVEEVEDDG N+NGIN QNE  NDEDEKKKHAELLALP
Sbjct: 61  EEIEEVEEEEEEEEEEEEGDEEDVEEVEDDGTNENGINVQNETINDEDEKKKHAELLALP 120

Query: 121 PHGSEVYVGGIPQDSSEEDLRTFCESIGEVTEIMPFSQGLMAFCFKQVRVMRSKESNENK 180
           PHGSEVYVGGIPQDSSE+DLR FCESIGEVTE               VRVMRSKESNENK
Sbjct: 121 PHGSEVYVGGIPQDSSEDDLRRFCESIGEVTE---------------VRVMRSKESNENK 180

Query: 181 GFAFVTYRGVELASKAIDELNNTEFKGKKIKCSSSQAKHRLFIGNVPRSWGEEDLRKVVT 240
           GFAFVT+R VELASKAIDELNNTEFKGKKIKCSSSQAKHRLFIGNVPRSWGEEDL+KVVT
Sbjct: 181 GFAFVTFRSVELASKAIDELNNTEFKGKKIKCSSSQAKHRLFIGNVPRSWGEEDLKKVVT 240

Query: 241 DIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDDNAPTVSWAD 300
           +IGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDDNAPTVSWAD
Sbjct: 241 EIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDDNAPTVSWAD 300

Query: 301 PKNADSSAASQVKAVYVKNLPKNVTQEQLKKLFDHHGKITKVVLPPAKSGQERNRIGFVH 360
           PKNADSSAASQVKAVYVKNLPKNVTQEQLKKLFDHHGKITKVVLPPAKSGQE+NRIGFVH
Sbjct: 301 PKNADSSAASQVKAVYVKNLPKNVTQEQLKKLFDHHGKITKVVLPPAKSGQEKNRIGFVH 360

Query: 361 FSERSSAMKALKNTEKYELDGQVLECSLAKPQADQKSGGSNSQKSGLLPNYPPRVGYGFV 420
           FSERSSAMKALKNTEKYELDGQVLECSLAKPQADQKSGGSNSQKSGLLPNYPPRVGYGFV
Sbjct: 361 FSERSSAMKALKNTEKYELDGQVLECSLAKPQADQKSGGSNSQKSGLLPNYPPRVGYGFV 420

Query: 421 GGAYGAVNAGYGASGFGQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGSQMLTPPPH 480
           GGAYGAVNAGYGASGFGQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGSQMLTPPPH
Sbjct: 421 GGAYGAVNAGYGASGFGQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGSQMLTPPPH 480

Query: 481 PRSGGGGGGGSGGGSGSKNGGSSSRGRHSHDS--------GHGGHGRRYRPY 525
           PRS GGGGGGSGGGSGSKN GSSSRGRHSHDS        GHGGHGRRYRPY
Sbjct: 481 PRS-GGGGGGSGGGSGSKNSGSSSRGRHSHDSGHGGGHGGGHGGHGRRYRPY 516

[Close]

BLAST of HG10001258 vs. NCBI nr
Match: XP_023533658.1 (heterogeneous nuclear ribonucleoprotein Q-like [Cucurbita pepo subsp. pepo] >XP_023533659.1 heterogeneous nuclear ribonucleoprotein Q-like [Cucurbita pepo subsp. pepo] >XP_023533660.1 heterogeneous nuclear ribonucleoprotein Q-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 867.1 bits (2239), Expect = 7.9e-248
Identity = 478/526 (90.87%), Postives = 491/526 (93.35%), Query Frame = 0


Query: 1   MPRGKGNASSTARPVEPEKQNESEKPGDSDERVDLDVDNDPEEVMEEDVEYEEVEEEEDV 60
           MPRGKGNASSTARPVEPEKQNESEKP DSDERVDLDVDNDPEEVMEEDVEYEEVEEEE+V
Sbjct: 1   MPRGKGNASSTARPVEPEKQNESEKPVDSDERVDLDVDNDPEEVMEEDVEYEEVEEEEEV 60

Query: 61  EEIEEVEEEEEEEE-EEEEGEEEDVEEVEDDGNNDNGINAQNEISNDEDEKKKHAELLAL 120
           EEIEEVEEEEEEEE EEEE EEEDVE VED GNNDNGINAQNE   DEDEKKKH ELLAL
Sbjct: 61  EEIEEVEEEEEEEEVEEEEVEEEDVEGVEDGGNNDNGINAQNENGIDEDEKKKHDELLAL 120

Query: 121 PPHGSEVYVGGIPQDSSEEDLRTFCESIGEVTEIMPFSQGLMAFCFKQVRVMRSKESNEN 180
           PPHGSEVY+GGIPQD+SEEDLR+FC SIGEVTE               VR+M+SK+SNEN
Sbjct: 121 PPHGSEVYIGGIPQDTSEEDLRSFCVSIGEVTE---------------VRIMKSKDSNEN 180

Query: 181 KGFAFVTYRGVELASKAIDELNNTEFKGKKIKCSSSQAKHRLFIGNVPRSWGEEDLRKVV 240
           KGFAFVTY+ VELASKAID LNNTEFKGKKIKCSSSQAKHRLF+GNVPRSWGEEDLRKVV
Sbjct: 181 KGFAFVTYKSVELASKAIDGLNNTEFKGKKIKCSSSQAKHRLFMGNVPRSWGEEDLRKVV 240

Query: 241 TDIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDDNAPTVSWA 300
            DIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDDNAPTVSWA
Sbjct: 241 MDIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDDNAPTVSWA 300

Query: 301 DPKNADSSAASQVKAVYVKNLPKNVTQEQLKKLFDHHGKITKVVLPPAKSGQERNRIGFV 360
           DPKNADSSAASQVKAVYVKNLPKNVTQEQLKKLFDHHGKITKVVLPPAKSGQE+NRIGFV
Sbjct: 301 DPKNADSSAASQVKAVYVKNLPKNVTQEQLKKLFDHHGKITKVVLPPAKSGQEKNRIGFV 360

Query: 361 HFSERSSAMKALKNTEKYELDGQVLECSLAKPQADQKSGGSNSQKSGLLPNYPPRVGYGF 420
           HFSERSSAMKALKNTEKYELDGQVLECSLAKPQADQKSGGSNSQKSGLLPNYPPRVGYGF
Sbjct: 361 HFSERSSAMKALKNTEKYELDGQVLECSLAKPQADQKSGGSNSQKSGLLPNYPPRVGYGF 420

Query: 421 VGGAYGAVNAGYGASGFGQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGSQMLTPPP 480
           VGGAYGAVN GYGASGFGQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGSQM+TPPP
Sbjct: 421 VGGAYGAVNPGYGASGFGQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGSQMMTPPP 480

Query: 481 HPRSGGGGGGGSGGGSGSKNGGSSSR-GRHSHDSGHGGHGRRYRPY 525
           HPRSGGG G GSGGGSGSK+GGSSSR GRH+HDS   GHGRRYRPY
Sbjct: 481 HPRSGGGSGSGSGGGSGSKSGGSSSRGGRHTHDS---GHGRRYRPY 508

[Close]

BLAST of HG10001258 vs. NCBI nr
Match: XP_022153053.1 (heterogeneous nuclear ribonucleoprotein Q [Momordica charantia] >XP_022153054.1 heterogeneous nuclear ribonucleoprotein Q [Momordica charantia] >XP_022153055.1 heterogeneous nuclear ribonucleoprotein Q [Momordica charantia])

HSP 1 Score: 865.5 bits (2235), Expect = 2.3e-247
Identity = 476/531 (89.64%), Postives = 490/531 (92.28%), Query Frame = 0


Query: 1   MPRGKGNASSTARPVEPEKQNESEKPGDSDERVDLDVDNDPEEVMEEDVEYEEVEEEEDV 60
           MPRGKGNASSTARPVEPEKQNESEKP DSDERVDLDVDNDPEE MEEDVEYEEVEEEE+V
Sbjct: 1   MPRGKGNASSTARPVEPEKQNESEKPVDSDERVDLDVDNDPEETMEEDVEYEEVEEEEEV 60

Query: 61  EEIEEV------EEEEEEEEEEEEGEEEDVEEVEDDGNNDNGINAQNEISNDEDEKKKHA 120
           EEIEEV      EEEEEEEEEEEEGEEEDVEEVED GNNDNG +AQNEI NDEDEKK+HA
Sbjct: 61  EEIEEVEEEEEEEEEEEEEEEEEEGEEEDVEEVEDGGNNDNGNDAQNEIGNDEDEKKRHA 120

Query: 121 ELLALPPHGSEVYVGGIPQDSSEEDLRTFCESIGEVTEIMPFSQGLMAFCFKQVRVMRSK 180
           ELLALPPHGSEVY+GGIPQDSSEEDLR+FC SIGEVTE               VR+MRSK
Sbjct: 121 ELLALPPHGSEVYIGGIPQDSSEEDLRSFCASIGEVTE---------------VRIMRSK 180

Query: 181 ESNENKGFAFVTYRGVELASKAIDELNNTEFKGKKIKCSSSQAKHRLFIGNVPRSWGEED 240
           +SNENKGF+FVTY+ VELASKAIDELNNTEFKGKKIKCSSSQAKHRLFIGNVPRSWGEED
Sbjct: 181 DSNENKGFSFVTYKSVELASKAIDELNNTEFKGKKIKCSSSQAKHRLFIGNVPRSWGEED 240

Query: 241 LRKVVTDIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDDNAP 300
           LRKVVTDIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDDNAP
Sbjct: 241 LRKVVTDIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDDNAP 300

Query: 301 TVSWADPKNADSSAASQVKAVYVKNLPKNVTQEQLKKLFDHHGKITKVVLPPAKSGQERN 360
           TVSWADPKNADSSAASQVKAVYVKNLPKNVTQEQLK+LFDHHGKITKVVLPPAKSGQE+N
Sbjct: 301 TVSWADPKNADSSAASQVKAVYVKNLPKNVTQEQLKRLFDHHGKITKVVLPPAKSGQEKN 360

Query: 361 RIGFVHFSERSSAMKALKNTEKYELDGQVLECSLAKPQADQKSGGSNSQKSGLLPNYPPR 420
           RIGFVHF+ERSSAMKALKNTEKYELDGQVLECSLAKPQADQKSGGSNSQKSGLLPNYPPR
Sbjct: 361 RIGFVHFAERSSAMKALKNTEKYELDGQVLECSLAKPQADQKSGGSNSQKSGLLPNYPPR 420

Query: 421 VGYGFVGGAY-GAVNAGYGASGFGQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGSQ 480
           VGYG+VGGAY GAVNAGYGAS F QPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGSQ
Sbjct: 421 VGYGYVGGAYGGAVNAGYGASSFSQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGSQ 480

Query: 481 MLTPPPHPRSGGGGGGGSGGGSGSKNGGSSSRGRHSHDSGHGGHGRRYRPY 525
           MLTPPPHPRSG       GGGSGSKNGGSSSRGRH+HDS   GHGRRYRPY
Sbjct: 481 MLTPPPHPRSG-------GGGSGSKNGGSSSRGRHTHDS---GHGRRYRPY 506

[Close]

BLAST of HG10001258 vs. ExPASy Swiss-Prot
Match: Q9ASP6 (Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana OX=3702 GN=LIF2 PE=1 SV=1)

HSP 1 Score: 407.9 bits (1047), Expect = 1.7e-112
Identity = 255/528 (48.30%), Postives = 348/528 (65.91%), Query Frame = 0


Query: 28  DSDERVDLDVDNDPEEVMEEDVEYEEVEEEEDVEEIEEVEEEEEEEEEEEEGEEEDVE-- 87
           D+D+RVD            E+  Y E+E+E + E++EE EEEEEE++++++   ++ E  
Sbjct: 6   DNDDRVDF-----------EEGSYSEMEDEVEEEQVEEYEEEEEEDDDDDDVGNQNAEER 65

Query: 88  EVEDDGNNDNG--INAQNEISNDED---------------------EKKKHAELLALPPH 147
           EVED G+   G   + Q EI+ D+D                     +++K++ LL+LPPH
Sbjct: 66  EVEDYGDTKGGDMEDVQEEIAEDDDNHIDIETADDDEKPPSPIDDEDREKYSHLLSLPPH 125

Query: 148 GSEVYVGGIPQDSSEEDLRTFCESIGEVTEIMPFSQGLMAFCFKQVRVMRSKESNENKGF 207
           GSEV++GG+P+D  EEDLR  CE IGE+ E               VR+M+ ++S ++KG+
Sbjct: 126 GSEVFIGGLPRDVGEEDLRDLCEEIGEIFE---------------VRLMKDRDSGDSKGY 185

Query: 208 AFVTYRGVELASKAIDELNNTEFKGKKIKCSSSQAKHRLFIGNVPRSWGEEDLRKVVTDI 267
           AFV ++  ++A KAI+EL++ EFKGK I+CS S+ K+RLFIGN+P++W E++ RKV+ D+
Sbjct: 186 AFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDV 245

Query: 268 GPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDDNAPTVSWADPK 327
           GPGV  +EL+KD  NT+ NRGFAF+ YYN+ACA+YSRQKM++  FKL+ NAPTV+WADPK
Sbjct: 246 GPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPK 305

Query: 328 NA--DSSAASQVKAVYVKNLPKNVTQEQLKKLFDHHGKITKVVLPPAKSGQERNRIGFVH 387
           ++   S+AA+QVKA+YVKN+P+N + EQLK+LF  HG++TK+V PP K G  +   GFVH
Sbjct: 306 SSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGG--KRDFGFVH 365

Query: 388 FSERSSAMKALKNTEKYELDGQVLECSLAKPQADQKSGGSNSQKSGLLPNYPPRVG---Y 447
           ++ERSSA+KA+K+TE+YE++GQ LE  LAKPQA++K   S S   G  P   P V     
Sbjct: 366 YAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPS-SYSYGAAPTPAPFVHPTFG 425

Query: 448 GFVGGAYGAVNAGYGASG-FGQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGSQMLT 507
           GF    YGA+ AG G +G F QP+IYGRG  P GM M+PMLLPDGR+GYVLQQPG  M  
Sbjct: 426 GFAAAPYGAMGAGLGIAGSFSQPMIYGRGAMPTGMQMVPMLLPDGRVGYVLQQPGMPMAA 485

Query: 508 PPPHPRSGGGGGGGSGGGSGSKNGGSSSRGRHSHDSGHGGHGRRYRPY 525
            PP          GS GGSG  N        H HD   G  GRRYRPY
Sbjct: 486 APPQRPRRNDRNNGSSGGSGRDNS-------HEHDGNRG--GRRYRPY 495

[Close]

BLAST of HG10001258 vs. ExPASy Swiss-Prot
Match: O43390 (Heterogeneous nuclear ribonucleoprotein R OS=Homo sapiens OX=9606 GN=HNRNPR PE=1 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 2.3e-32
Identity = 129/454 (28.41%), Postives = 205/454 (45.15%), Query Frame = 0


Query: 120 PPHGSEVYVGGIPQDSSEEDLRTFCESIGEVTEIMPFSQGLMAFCFKQVRVMRSKESNEN 179
           P  G+EV+VG IP+D  E++L    E  G + ++               R+M    S +N
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDL---------------RLMMDPLSGQN 220

Query: 180 KGFAFVTYRGVELASKAIDELNNTEFK-GKKIKCSSSQAKHRLFIGNVPRSWGEEDLRKV 239
           +G+AF+T+ G E A +A+   ++ E + GK +    S A +RLF+G++P++  +E++ + 
Sbjct: 221 RGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEE 280

Query: 240 VTDIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDDNAPTVSW 299
            + +  G+  V L     +   NRGF F++Y +H  A  +R+++M+ K K+  N  TV W
Sbjct: 281 FSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEW 340

Query: 300 ADP-KNADSSAASQVKAVYVKNLPKNVTQEQLKKLFDHHGKITKVVLPPAKSGQERNRIG 359
           ADP +  D    ++VK ++V+NL   VT+E L+K F   GK+ +V        ++     
Sbjct: 341 ADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYA 400

Query: 360 FVHFSERSSAMKALKNTEKYELDGQVLECSLAKP---QADQKSGGSNSQKSGLLPNY--- 419
           FVHF +R +A+KA+      E++G+ +E  LAKP   +  ++     + +S    +Y   
Sbjct: 401 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYH 460

Query: 420 -PPRVGYGFVGGAYGAVNAGYG-----------------------ASGFGQP-------- 479
            PPR+     G   G    GYG                         G+  P        
Sbjct: 461 PPPRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGY 520

Query: 480 LIYGRG---------PTPAGMAMMPMLLPDGRIGYVLQQPGSQMLTPPPHPRSGGGGGGG 525
            + GRG         P P G    P   P GR GY      SQ   P   PR    G  G
Sbjct: 521 AVRGRGGGRGGRGAPPPPRGRGAPP---PRGRAGY------SQRGAPLGPPR----GSRG 578

[Close]

BLAST of HG10001258 vs. ExPASy Swiss-Prot
Match: O60506 (Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens OX=9606 GN=SYNCRIP PE=1 SV=2)

HSP 1 Score: 134.8 bits (338), Expect = 2.8e-30
Identity = 129/433 (29.79%), Postives = 198/433 (45.73%), Query Frame = 0


Query: 120 PPHGSEVYVGGIPQDSSEEDLRTFCESIGEVTEIMPFSQGLMAFCFKQVRVMRSKESNEN 179
           P  G+E++VG IP+D  E++L    E  G + ++               R+M    +  N
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDL---------------RLMMDPLTGLN 217

Query: 180 KGFAFVTYRGVELASKAIDELNNTEFK-GKKIKCSSSQAKHRLFIGNVPRSWGEEDLRKV 239
           +G+AFVT+   E A +A+   NN E + GK I    S A +RLF+G++P+S  +E + + 
Sbjct: 218 RGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEE 277

Query: 240 VTDIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDDNAPTVSW 299
            + +  G+T V L     +   NRGF F++Y +H  A  +R+++M+ K K+  N  TV W
Sbjct: 278 FSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEW 337

Query: 300 ADP-KNADSSAASQVKAVYVKNLPKNVTQEQLKKLFDHHGKITKVVLPPAKSGQERNRIG 359
           ADP ++ D    ++VK ++V+NL   VT+E L+K F   GK+ +V        ++     
Sbjct: 338 ADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYA 397

Query: 360 FVHFSERSSAMKALKNTEKYELDGQVLECSLAKPQADQKSGGSNSQKSGLL--------- 419
           F+HF ER  A+KA++     +L+G+ +E   AKP  DQK     +Q+             
Sbjct: 398 FIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYY 457

Query: 420 ---PNYPP---------RVGYGFVGGAYGAVN----AGYG----ASGFGQPLIYGRGPTP 479
              P+ PP         R GYG+    YG  +     GY       G+  P  YG     
Sbjct: 458 YGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDYYDYYGYDYHNYRGGYEDP-YYGYEDFQ 517

Query: 480 AGMAMMPMLLPDGRIGYVLQQPGSQMLTPPPHPRSG---GGGGGGSGGGSGSKNGGSSSR 519
            G          G  G     P       PP  R+G    GG G + G  G++ G    R
Sbjct: 518 VGAR------GRGGRGARGAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQQQR 558

[Close]

BLAST of HG10001258 vs. ExPASy Swiss-Prot
Match: Q7TMK9 (Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus OX=10090 GN=Syncrip PE=1 SV=2)

HSP 1 Score: 134.4 bits (337), Expect = 3.7e-30
Identity = 129/433 (29.79%), Postives = 198/433 (45.73%), Query Frame = 0


Query: 120 PPHGSEVYVGGIPQDSSEEDLRTFCESIGEVTEIMPFSQGLMAFCFKQVRVMRSKESNEN 179
           P  G+E++VG IP+D  E++L    E  G + ++               R+M    +  N
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDL---------------RLMMDPLTGLN 217

Query: 180 KGFAFVTYRGVELASKAIDELNNTEFK-GKKIKCSSSQAKHRLFIGNVPRSWGEEDLRKV 239
           +G+AFVT+   E A +A+   NN E + GK I    S A +RLF+G++P+S  +E + + 
Sbjct: 218 RGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEE 277

Query: 240 VTDIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDDNAPTVSW 299
            + +  G+T V L     +   NRGF F++Y +H  A  +R+++M+ K K+  N  TV W
Sbjct: 278 FSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEW 337

Query: 300 ADP-KNADSSAASQVKAVYVKNLPKNVTQEQLKKLFDHHGKITKVVLPPAKSGQERNRIG 359
           ADP ++ D    ++VK ++V+NL   VT+E L+K F   GK+ +V        ++     
Sbjct: 338 ADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYA 397

Query: 360 FVHFSERSSAMKALKNTEKYELDGQVLECSLAKPQADQKSGGSNSQKSGLL--------- 419
           F+HF ER  A+KA++     +L+G+ +E   AKP  DQK     +Q+             
Sbjct: 398 FIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYY 457

Query: 420 ---PNYPP---------RVGYGFVGGAYGAVN----AGYG----ASGFGQPLIYGRGPTP 479
              P+ PP         R GYG+    YG  +     GY       G+  P  YG     
Sbjct: 458 YGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDYYDYYGYDYHNYRGGYEDP-YYGYEDFQ 517

Query: 480 AGMAMMPMLLPDGRIGYVLQQPGSQMLTPPPHPRSG---GGGGGGSGGGSGSKNGGSSSR 519
            G          G  G     P       PP  R+G    GG G + G  G++ G    R
Sbjct: 518 VGAR------GRGGRGARGAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQQQR 558

[Close]

BLAST of HG10001258 vs. ExPASy Swiss-Prot
Match: Q7TP47 (Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus OX=10116 GN=Syncrip PE=2 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 3.7e-30
Identity = 129/433 (29.79%), Postives = 198/433 (45.73%), Query Frame = 0


Query: 120 PPHGSEVYVGGIPQDSSEEDLRTFCESIGEVTEIMPFSQGLMAFCFKQVRVMRSKESNEN 179
           P  G+E++VG IP+D  E++L    E  G + ++               R+M    +  N
Sbjct: 68  PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDL---------------RLMMDPLTGLN 127

Query: 180 KGFAFVTYRGVELASKAIDELNNTEFK-GKKIKCSSSQAKHRLFIGNVPRSWGEEDLRKV 239
           +G+AFVT+   E A +A+   NN E + GK I    S A +RLF+G++P+S  +E + + 
Sbjct: 128 RGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEE 187

Query: 240 VTDIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDDNAPTVSW 299
            + +  G+T V L     +   NRGF F++Y +H  A  +R+++M+ K K+  N  TV W
Sbjct: 188 FSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEW 247

Query: 300 ADP-KNADSSAASQVKAVYVKNLPKNVTQEQLKKLFDHHGKITKVVLPPAKSGQERNRIG 359
           ADP ++ D    ++VK ++V+NL   VT+E L+K F   GK+ +V        ++     
Sbjct: 248 ADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYA 307

Query: 360 FVHFSERSSAMKALKNTEKYELDGQVLECSLAKPQADQKSGGSNSQKSGLL--------- 419
           F+HF ER  A+KA++     +L+G+ +E   AKP  DQK     +Q+             
Sbjct: 308 FIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYY 367

Query: 420 ---PNYPP---------RVGYGFVGGAYGAVN----AGYG----ASGFGQPLIYGRGPTP 479
              P+ PP         R GYG+    YG  +     GY       G+  P  YG     
Sbjct: 368 YGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDYYDYYGYDYHNYRGGYEDP-YYGYEDFQ 427

Query: 480 AGMAMMPMLLPDGRIGYVLQQPGSQMLTPPPHPRSG---GGGGGGSGGGSGSKNGGSSSR 519
            G          G  G     P       PP  R+G    GG G + G  G++ G    R
Sbjct: 428 VGAR------GRGGRGARGAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQQQR 468

[Close]

BLAST of HG10001258 vs. ExPASy TrEMBL
Match: A0A0A0KI54 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G425690 PE=4 SV=1)

HSP 1 Score: 904.4 bits (2336), Expect = 2.2e-259
Identity = 491/528 (92.99%), Postives = 500/528 (94.70%), Query Frame = 0


Query: 1   MPRGKGNASSTARPVEPEKQNESEKPGDSDERVDLDVDNDPEEVMEEDVEYEEVEEEEDV 60
           MPRGKGNASSTARPVEPEKQNE EKPGDSDERVDLDVDNDPEEVMEEDVEYEEVEEEE+V
Sbjct: 1   MPRGKGNASSTARPVEPEKQNEPEKPGDSDERVDLDVDNDPEEVMEEDVEYEEVEEEEEV 60

Query: 61  EEIEEVEEEEEEEEEEEEGEEEDVEEVEDDGNNDNGINAQNEISNDEDEKKKHAELLALP 120
           EEIEEVEEEEEEEE+EEEG+EEDVEEVEDDG NDNGIN+QNE  NDEDE KKHAELLALP
Sbjct: 61  EEIEEVEEEEEEEEDEEEGDEEDVEEVEDDGTNDNGINSQNETINDEDETKKHAELLALP 120

Query: 121 PHGSEVYVGGIPQDSSEEDLRTFCESIGEVTEIMPFSQGLMAFCFKQVRVMRSKESNENK 180
           PHGSEVYVGGIPQDSSE+DLR FCESIGEVTE               VRVMRSKESNENK
Sbjct: 121 PHGSEVYVGGIPQDSSEDDLRRFCESIGEVTE---------------VRVMRSKESNENK 180

Query: 181 GFAFVTYRGVELASKAIDELNNTEFKGKKIKCSSSQAKHRLFIGNVPRSWGEEDLRKVVT 240
           GFAFVT+R VELASKAIDELNNTEFKGKKIKCSSSQAKHRLFIGNVPRSWGEEDL+KVVT
Sbjct: 181 GFAFVTFRSVELASKAIDELNNTEFKGKKIKCSSSQAKHRLFIGNVPRSWGEEDLKKVVT 240

Query: 241 DIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDDNAPTVSWAD 300
           +IGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDDNAPTVSWAD
Sbjct: 241 EIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDDNAPTVSWAD 300

Query: 301 PKNADSSAASQVKAVYVKNLPKNVTQEQLKKLFDHHGKITKVVLPPAKSGQERNRIGFVH 360
           PKNADSSAASQVKAVYVKNLPKNVTQEQLKKLFDHHGKITKVVLPPAKSGQE+NRIGFVH
Sbjct: 301 PKNADSSAASQVKAVYVKNLPKNVTQEQLKKLFDHHGKITKVVLPPAKSGQEKNRIGFVH 360

Query: 361 FSERSSAMKALKNTEKYELDGQVLECSLAKPQADQKSGGSNSQKSGLLPNYPPRVGYGFV 420
           FSERSSAMKALKNTEKYELDGQVLECSLAKPQADQKSGGSNSQKSGLLPNYPPRVGYGFV
Sbjct: 361 FSERSSAMKALKNTEKYELDGQVLECSLAKPQADQKSGGSNSQKSGLLPNYPPRVGYGFV 420

Query: 421 GGAYGAVNAGYGASGFGQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGSQMLTPPPH 480
           GGAYGAVNAGYG SGFGQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGSQMLTPPPH
Sbjct: 421 GGAYGAVNAGYGGSGFGQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGSQMLTPPPH 480

Query: 481 PRSGGGGGGGSGGGSGSKNGGSSSRGRHSHDS----GHGGHGRRYRPY 525
           PRSGGGG GGSGGGSGSKNGGSSSRGRHSHDS    GHGGHGRRYRPY
Sbjct: 481 PRSGGGGSGGSGGGSGSKNGGSSSRGRHSHDSGHGGGHGGHGRRYRPY 513

[Close]

BLAST of HG10001258 vs. ExPASy TrEMBL
Match: A0A1S3BMC2 (nucleolin OS=Cucumis melo OX=3656 GN=LOC103491420 PE=4 SV=1)

HSP 1 Score: 899.8 bits (2324), Expect = 5.3e-258
Identity = 492/532 (92.48%), Postives = 500/532 (93.98%), Query Frame = 0


Query: 1   MPRGKGNASSTARPVEPEKQNESEKPGDSDERVDLDVDNDPEEVMEEDVEYEEVEEEEDV 60
           MPRGKGNASSTARPVEPEKQNE EKPGDSDERVDLDVDNDPEEVMEEDVEYEEVEEEE+V
Sbjct: 1   MPRGKGNASSTARPVEPEKQNEPEKPGDSDERVDLDVDNDPEEVMEEDVEYEEVEEEEEV 60

Query: 61  EEIEEVEEEEEEEEEEEEGEEEDVEEVEDDGNNDNGINAQNEISNDEDEKKKHAELLALP 120
           EEIEEVEEEEEEEEEEEEG+EEDVEEVEDDG N+NGIN QNE  NDEDEKKKHAELLALP
Sbjct: 61  EEIEEVEEEEEEEEEEEEGDEEDVEEVEDDGTNENGINVQNETINDEDEKKKHAELLALP 120

Query: 121 PHGSEVYVGGIPQDSSEEDLRTFCESIGEVTEIMPFSQGLMAFCFKQVRVMRSKESNENK 180
           PHGSEVYVGGIPQDSSE+DLR FCESIGEVTE               VRVMRSKESNENK
Sbjct: 121 PHGSEVYVGGIPQDSSEDDLRRFCESIGEVTE---------------VRVMRSKESNENK 180

Query: 181 GFAFVTYRGVELASKAIDELNNTEFKGKKIKCSSSQAKHRLFIGNVPRSWGEEDLRKVVT 240
           GFAFVT+R VELASKAIDELNNTEFKGKKIKCSSSQAKHRLFIGNVPRSWGEEDL+KVVT
Sbjct: 181 GFAFVTFRSVELASKAIDELNNTEFKGKKIKCSSSQAKHRLFIGNVPRSWGEEDLKKVVT 240

Query: 241 DIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDDNAPTVSWAD 300
           +IGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDDNAPTVSWAD
Sbjct: 241 EIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDDNAPTVSWAD 300

Query: 301 PKNADSSAASQVKAVYVKNLPKNVTQEQLKKLFDHHGKITKVVLPPAKSGQERNRIGFVH 360
           PKNADSSAASQVKAVYVKNLPKNVTQEQLKKLFDHHGKITKVVLPPAKSGQE+NRIGFVH
Sbjct: 301 PKNADSSAASQVKAVYVKNLPKNVTQEQLKKLFDHHGKITKVVLPPAKSGQEKNRIGFVH 360

Query: 361 FSERSSAMKALKNTEKYELDGQVLECSLAKPQADQKSGGSNSQKSGLLPNYPPRVGYGFV 420
           FSERSSAMKALKNTEKYELDGQVLECSLAKPQADQKSGGSNSQKSGLLPNYPPRVGYGFV
Sbjct: 361 FSERSSAMKALKNTEKYELDGQVLECSLAKPQADQKSGGSNSQKSGLLPNYPPRVGYGFV 420

Query: 421 GGAYGAVNAGYGASGFGQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGSQMLTPPPH 480
           GGAYGAVNAGYGASGFGQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGSQMLTPPPH
Sbjct: 421 GGAYGAVNAGYGASGFGQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGSQMLTPPPH 480

Query: 481 PRSGGGGGGGSGGGSGSKNGGSSSRGRHSHDS--------GHGGHGRRYRPY 525
           PRS GGGGGGSGGGSGSKN GSSSRGRHSHDS        GHGGHGRRYRPY
Sbjct: 481 PRS-GGGGGGSGGGSGSKNSGSSSRGRHSHDSGHGGGHGGGHGGHGRRYRPY 516

[Close]

BLAST of HG10001258 vs. ExPASy TrEMBL
Match: A0A6J1DHV9 (heterogeneous nuclear ribonucleoprotein Q OS=Momordica charantia OX=3673 GN=LOC111020649 PE=4 SV=1)

HSP 1 Score: 865.5 bits (2235), Expect = 1.1e-247
Identity = 476/531 (89.64%), Postives = 490/531 (92.28%), Query Frame = 0


Query: 1   MPRGKGNASSTARPVEPEKQNESEKPGDSDERVDLDVDNDPEEVMEEDVEYEEVEEEEDV 60
           MPRGKGNASSTARPVEPEKQNESEKP DSDERVDLDVDNDPEE MEEDVEYEEVEEEE+V
Sbjct: 1   MPRGKGNASSTARPVEPEKQNESEKPVDSDERVDLDVDNDPEETMEEDVEYEEVEEEEEV 60

Query: 61  EEIEEV------EEEEEEEEEEEEGEEEDVEEVEDDGNNDNGINAQNEISNDEDEKKKHA 120
           EEIEEV      EEEEEEEEEEEEGEEEDVEEVED GNNDNG +AQNEI NDEDEKK+HA
Sbjct: 61  EEIEEVEEEEEEEEEEEEEEEEEEGEEEDVEEVEDGGNNDNGNDAQNEIGNDEDEKKRHA 120

Query: 121 ELLALPPHGSEVYVGGIPQDSSEEDLRTFCESIGEVTEIMPFSQGLMAFCFKQVRVMRSK 180
           ELLALPPHGSEVY+GGIPQDSSEEDLR+FC SIGEVTE               VR+MRSK
Sbjct: 121 ELLALPPHGSEVYIGGIPQDSSEEDLRSFCASIGEVTE---------------VRIMRSK 180

Query: 181 ESNENKGFAFVTYRGVELASKAIDELNNTEFKGKKIKCSSSQAKHRLFIGNVPRSWGEED 240
           +SNENKGF+FVTY+ VELASKAIDELNNTEFKGKKIKCSSSQAKHRLFIGNVPRSWGEED
Sbjct: 181 DSNENKGFSFVTYKSVELASKAIDELNNTEFKGKKIKCSSSQAKHRLFIGNVPRSWGEED 240

Query: 241 LRKVVTDIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDDNAP 300
           LRKVVTDIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDDNAP
Sbjct: 241 LRKVVTDIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDDNAP 300

Query: 301 TVSWADPKNADSSAASQVKAVYVKNLPKNVTQEQLKKLFDHHGKITKVVLPPAKSGQERN 360
           TVSWADPKNADSSAASQVKAVYVKNLPKNVTQEQLK+LFDHHGKITKVVLPPAKSGQE+N
Sbjct: 301 TVSWADPKNADSSAASQVKAVYVKNLPKNVTQEQLKRLFDHHGKITKVVLPPAKSGQEKN 360

Query: 361 RIGFVHFSERSSAMKALKNTEKYELDGQVLECSLAKPQADQKSGGSNSQKSGLLPNYPPR 420
           RIGFVHF+ERSSAMKALKNTEKYELDGQVLECSLAKPQADQKSGGSNSQKSGLLPNYPPR
Sbjct: 361 RIGFVHFAERSSAMKALKNTEKYELDGQVLECSLAKPQADQKSGGSNSQKSGLLPNYPPR 420

Query: 421 VGYGFVGGAY-GAVNAGYGASGFGQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGSQ 480
           VGYG+VGGAY GAVNAGYGAS F QPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGSQ
Sbjct: 421 VGYGYVGGAYGGAVNAGYGASSFSQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGSQ 480

Query: 481 MLTPPPHPRSGGGGGGGSGGGSGSKNGGSSSRGRHSHDSGHGGHGRRYRPY 525
           MLTPPPHPRSG       GGGSGSKNGGSSSRGRH+HDS   GHGRRYRPY
Sbjct: 481 MLTPPPHPRSG-------GGGSGSKNGGSSSRGRHTHDS---GHGRRYRPY 506

[Close]

BLAST of HG10001258 vs. ExPASy TrEMBL
Match: A0A6J1H0I9 (heterogeneous nuclear ribonucleoprotein Q-like OS=Cucurbita moschata OX=3662 GN=LOC111459318 PE=4 SV=1)

HSP 1 Score: 864.8 bits (2233), Expect = 1.9e-247
Identity = 477/526 (90.68%), Postives = 490/526 (93.16%), Query Frame = 0


Query: 1   MPRGKGNASSTARPVEPEKQNESEKPGDSDERVDLDVDNDPEEVMEEDVEYEEVEEEEDV 60
           MPRGKGNASSTARPVEPEKQNESEKP DSDERVDLDVDNDPEEVMEEDVEYEEVEEEE+V
Sbjct: 1   MPRGKGNASSTARPVEPEKQNESEKPVDSDERVDLDVDNDPEEVMEEDVEYEEVEEEEEV 60

Query: 61  EEIEEVEEEEEEEE-EEEEGEEEDVEEVEDDGNNDNGINAQNEISNDEDEKKKHAELLAL 120
           EEIEEVEEEEEEEE EEEE EEEDVE VED GNNDNGINAQNE   DEDEKKKH ELLAL
Sbjct: 61  EEIEEVEEEEEEEEVEEEEVEEEDVEGVEDGGNNDNGINAQNENGIDEDEKKKHDELLAL 120

Query: 121 PPHGSEVYVGGIPQDSSEEDLRTFCESIGEVTEIMPFSQGLMAFCFKQVRVMRSKESNEN 180
           PPHGSEVY+GGIPQD+SEEDLR+FC SIGEVTE               VR+M+SK+SNEN
Sbjct: 121 PPHGSEVYIGGIPQDTSEEDLRSFCVSIGEVTE---------------VRIMKSKDSNEN 180

Query: 181 KGFAFVTYRGVELASKAIDELNNTEFKGKKIKCSSSQAKHRLFIGNVPRSWGEEDLRKVV 240
           KGFAFVTY+ VELASKAID LNNTEFKGKKIKCSSSQAKHRLF+GNVPRSWGEEDLRKVV
Sbjct: 181 KGFAFVTYKSVELASKAIDGLNNTEFKGKKIKCSSSQAKHRLFMGNVPRSWGEEDLRKVV 240

Query: 241 TDIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDDNAPTVSWA 300
            DIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDDNAPTVSWA
Sbjct: 241 MDIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDDNAPTVSWA 300

Query: 301 DPKNADSSAASQVKAVYVKNLPKNVTQEQLKKLFDHHGKITKVVLPPAKSGQERNRIGFV 360
           DPKNADSSAASQVKAVYVKNLPK VTQEQLKKLFDHHGKITKVVLPPAKSGQE+NRIGFV
Sbjct: 301 DPKNADSSAASQVKAVYVKNLPKTVTQEQLKKLFDHHGKITKVVLPPAKSGQEKNRIGFV 360

Query: 361 HFSERSSAMKALKNTEKYELDGQVLECSLAKPQADQKSGGSNSQKSGLLPNYPPRVGYGF 420
           HFSERSSAMKALKNTEKYELDGQVLECSLAKPQADQKSGGSNSQKSGLLPNYPPRVGYGF
Sbjct: 361 HFSERSSAMKALKNTEKYELDGQVLECSLAKPQADQKSGGSNSQKSGLLPNYPPRVGYGF 420

Query: 421 VGGAYGAVNAGYGASGFGQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGSQMLTPPP 480
           VGGAYGAVN GYGASGFGQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGSQM+TPPP
Sbjct: 421 VGGAYGAVNPGYGASGFGQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGSQMMTPPP 480

Query: 481 HPRSGGGGGGGSGGGSGSKNGGSSSR-GRHSHDSGHGGHGRRYRPY 525
           HPRSGGG G GSGGGSGSK+GGSSSR GRH+HDS   GHGRRYRPY
Sbjct: 481 HPRSGGGSGSGSGGGSGSKSGGSSSRGGRHTHDS---GHGRRYRPY 508

[Close]

BLAST of HG10001258 vs. ExPASy TrEMBL
Match: A0A6J1FY14 (heterogeneous nuclear ribonucleoprotein Q-like OS=Cucurbita moschata OX=3662 GN=LOC111448867 PE=4 SV=1)

HSP 1 Score: 864.0 bits (2231), Expect = 3.2e-247
Identity = 474/524 (90.46%), Postives = 484/524 (92.37%), Query Frame = 0


Query: 1   MPRGKGNASSTARPVEPEKQNESEKPGDSDERVDLDVDNDPEEVMEEDVEYEEVEEEEDV 60
           MP GKGNASS ARPVEPEKQNESEKP DSDERVDLDVDNDPEEVMEEDVEYEEVEEEE+V
Sbjct: 1   MPSGKGNASSIARPVEPEKQNESEKPVDSDERVDLDVDNDPEEVMEEDVEYEEVEEEEEV 60

Query: 61  EEIEEVEEEEEEEEEEEEGEEEDVEEVEDDGNNDNGINAQNEISNDEDEKKKHAELLALP 120
           EEIE   EEEEEEEEEEEGEEEDVEEVEDDGNNDN IN QNEI NDEDEKKKHAELLALP
Sbjct: 61  EEIE--VEEEEEEEEEEEGEEEDVEEVEDDGNNDNRINGQNEIDNDEDEKKKHAELLALP 120

Query: 121 PHGSEVYVGGIPQDSSEEDLRTFCESIGEVTEIMPFSQGLMAFCFKQVRVMRSKESNENK 180
           PHGSEVYVGGIP DSSEEDLR FCE IGEVTE               VRVMRSKESNENK
Sbjct: 121 PHGSEVYVGGIPHDSSEEDLRQFCEPIGEVTE---------------VRVMRSKESNENK 180

Query: 181 GFAFVTYRGVELASKAIDELNNTEFKGKKIKCSSSQAKHRLFIGNVPRSWGEEDLRKVVT 240
           GFAFVTYR VELASKAIDELNNTEFKGKKIKCSSSQAKHRLFIGNVPRSWGEEDL+KVV 
Sbjct: 181 GFAFVTYRSVELASKAIDELNNTEFKGKKIKCSSSQAKHRLFIGNVPRSWGEEDLKKVVK 240

Query: 241 DIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDDNAPTVSWAD 300
           DIGPGVTAVELVKDMKNTSNNRGFAF+DYYNHACAEYSRQKMMNP FKLDDNAPTVSWAD
Sbjct: 241 DIGPGVTAVELVKDMKNTSNNRGFAFVDYYNHACAEYSRQKMMNPTFKLDDNAPTVSWAD 300

Query: 301 PKNADSSAASQVKAVYVKNLPKNVTQEQLKKLFDHHGKITKVVLPPAKSGQERNRIGFVH 360
           PKNADSSAASQVKAVYVKNLPKNVTQEQLK+LFDHHGKITKVVLPPAK+GQE+NRIGFVH
Sbjct: 301 PKNADSSAASQVKAVYVKNLPKNVTQEQLKRLFDHHGKITKVVLPPAKAGQEKNRIGFVH 360

Query: 361 FSERSSAMKALKNTEKYELDGQVLECSLAKPQADQKSGGSNSQKSGLLPNYPPRVGYGFV 420
           FSERSSAMKALKNTEKYELDGQ+LECSLAKPQADQKSGGSNSQKSGLLPNYPPRVGYGFV
Sbjct: 361 FSERSSAMKALKNTEKYELDGQLLECSLAKPQADQKSGGSNSQKSGLLPNYPPRVGYGFV 420

Query: 421 GGAYGAVNAGYGASGFGQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGSQMLTPPPH 480
           GG YGAVNAGYGASGFGQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGSQMLTPPPH
Sbjct: 421 GGPYGAVNAGYGASGFGQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGSQMLTPPPH 480

Query: 481 PRSGGGGGGGSGGGSGSKNGGSSSRGRHSHDSGHGGHGRRYRPY 525
           PRS     GG+GGGSGSKNGGSSSRGRH+HD  +  HGRRYRPY
Sbjct: 481 PRS-----GGNGGGSGSKNGGSSSRGRHTHD--NSSHGRRYRPY 500

[Close]

BLAST of HG10001258 vs. TAIR 10
Match: AT3G52660.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 494.2 bits (1271), Expect = 1.3e-139
Identity = 292/511 (57.14%), Postives = 365/511 (71.43%), Query Frame = 0


Query: 21  NESEKPGDSDERVDLDVDNDPEEVMEEDVEYEEVEEEEDVEEIEEVEEE-EEEEEEEEEG 80
           +E+    +S+ERVDLD DNDPEE++EE+VEYEEVEE    EEIEE+EEE EEE E EEE 
Sbjct: 9   SEAHDSMESEERVDLDGDNDPEEILEEEVEYEEVEE----EEIEEIEEEIEEEVEVEEEE 68

Query: 81  EEEDVEEVEDDGNNDNGINAQNEISNDEDEKKKHAELLALPPHGSEVYVGGIPQDSSEED 140
           EEED    E                 +E+EKK+H ELLALPPHGSEVY+GGIP D++E D
Sbjct: 69  EEEDAVATE-----------------EEEEKKRHVELLALPPHGSEVYLGGIPTDATEGD 128

Query: 141 LRTFCESIGEVTEIMPFSQGLMAFCFKQVRVMRSKESNENKGFAFVTYRGVELASKAIDE 200
           L+ FC SIGEVTE               VR+MR K+S + KG+AFVT+R  +LA++AID 
Sbjct: 129 LKGFCGSIGEVTE---------------VRIMREKDSGDGKGYAFVTFRSKDLAAEAIDT 188

Query: 201 LNNTEFKGKKIKCSSSQAKHRLFIGNVPRSWGEEDLRKVVTDIGPGVTAVELVKDMKNTS 260
           LNNT+F+GK+IKCS++QAKHRLF+GNVPR+W E D++K    IGPGV  VEL K+ +N  
Sbjct: 189 LNNTDFRGKRIKCSTTQAKHRLFLGNVPRNWMESDIKKAANRIGPGVQIVELPKEPQNMG 248

Query: 261 NNRGFAFIDYYNHACAEYSRQKMMNPKFKLDDNAPTVSWADPKN--ADSSAASQVKAVYV 320
            NRGFAFI+YYNHACAEYS+QKM NP FKLDDNAPTVSWA+ ++     S+ASQVKA+Y+
Sbjct: 249 RNRGFAFIEYYNHACAEYSKQKMSNPSFKLDDNAPTVSWAESRSGGGGDSSASQVKALYI 308

Query: 321 KNLPKNVTQEQLKKLFDHHGKITKVVLPPAKSGQERNRIGFVHFSERSSAMKALKNTEKY 380
           KNLP+++TQE+LK LF+HHGKI KVV+PPAK G+E +R GFVH++ER+S M+ALKNTE+Y
Sbjct: 309 KNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTERY 368

Query: 381 ELDGQVLECSLAKPQADQKSGGS---NSQKSGLLPNYPPRVGYGFVGGAYGAVNAGYGAS 440
           E+DG +L+C+LAKPQADQK+  +   N QKS L PNYPP + YG     +GA+  G+GAS
Sbjct: 369 EIDGHMLDCTLAKPQADQKTNTNTVQNVQKSQLQPNYPPLLSYGMAPSPFGAL-GGFGAS 428

Query: 441 GFGQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPG-SQMLTPPPHPRSGGGGGGGSGG 500
            + QPL++  G    GM+MMP++LPDGRIGYVLQQPG + M  PPP       GG GS  
Sbjct: 429 AYSQPLMHAGGHAAGGMSMMPIMLPDGRIGYVLQQPGLAAMPQPPPRHSPPYRGGSGSSS 471

Query: 501 GSGSKNGGSSSRGRHSHDSGHGGHGRRYRPY 525
            SGSK    + RGR            RY PY
Sbjct: 489 SSGSKRSSDNGRGR-----------SRYNPY 471

[Close]

BLAST of HG10001258 vs. TAIR 10
Match: AT3G52660.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 494.2 bits (1271), Expect = 1.3e-139
Identity = 292/511 (57.14%), Postives = 365/511 (71.43%), Query Frame = 0


Query: 21  NESEKPGDSDERVDLDVDNDPEEVMEEDVEYEEVEEEEDVEEIEEVEEE-EEEEEEEEEG 80
           +E+    +S+ERVDLD DNDPEE++EE+VEYEEVEE    EEIEE+EEE EEE E EEE 
Sbjct: 9   SEAHDSMESEERVDLDGDNDPEEILEEEVEYEEVEE----EEIEEIEEEIEEEVEVEEEE 68

Query: 81  EEEDVEEVEDDGNNDNGINAQNEISNDEDEKKKHAELLALPPHGSEVYVGGIPQDSSEED 140
           EEED    E                 +E+EKK+H ELLALPPHGSEVY+GGIP D++E D
Sbjct: 69  EEEDAVATE-----------------EEEEKKRHVELLALPPHGSEVYLGGIPTDATEGD 128

Query: 141 LRTFCESIGEVTEIMPFSQGLMAFCFKQVRVMRSKESNENKGFAFVTYRGVELASKAIDE 200
           L+ FC SIGEVTE               VR+MR K+S + KG+AFVT+R  +LA++AID 
Sbjct: 129 LKGFCGSIGEVTE---------------VRIMREKDSGDGKGYAFVTFRSKDLAAEAIDT 188

Query: 201 LNNTEFKGKKIKCSSSQAKHRLFIGNVPRSWGEEDLRKVVTDIGPGVTAVELVKDMKNTS 260
           LNNT+F+GK+IKCS++QAKHRLF+GNVPR+W E D++K    IGPGV  VEL K+ +N  
Sbjct: 189 LNNTDFRGKRIKCSTTQAKHRLFLGNVPRNWMESDIKKAANRIGPGVQIVELPKEPQNMG 248

Query: 261 NNRGFAFIDYYNHACAEYSRQKMMNPKFKLDDNAPTVSWADPKN--ADSSAASQVKAVYV 320
            NRGFAFI+YYNHACAEYS+QKM NP FKLDDNAPTVSWA+ ++     S+ASQVKA+Y+
Sbjct: 249 RNRGFAFIEYYNHACAEYSKQKMSNPSFKLDDNAPTVSWAESRSGGGGDSSASQVKALYI 308

Query: 321 KNLPKNVTQEQLKKLFDHHGKITKVVLPPAKSGQERNRIGFVHFSERSSAMKALKNTEKY 380
           KNLP+++TQE+LK LF+HHGKI KVV+PPAK G+E +R GFVH++ER+S M+ALKNTE+Y
Sbjct: 309 KNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTERY 368

Query: 381 ELDGQVLECSLAKPQADQKSGGS---NSQKSGLLPNYPPRVGYGFVGGAYGAVNAGYGAS 440
           E+DG +L+C+LAKPQADQK+  +   N QKS L PNYPP + YG     +GA+  G+GAS
Sbjct: 369 EIDGHMLDCTLAKPQADQKTNTNTVQNVQKSQLQPNYPPLLSYGMAPSPFGAL-GGFGAS 428

Query: 441 GFGQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPG-SQMLTPPPHPRSGGGGGGGSGG 500
            + QPL++  G    GM+MMP++LPDGRIGYVLQQPG + M  PPP       GG GS  
Sbjct: 429 AYSQPLMHAGGHAAGGMSMMPIMLPDGRIGYVLQQPGLAAMPQPPPRHSPPYRGGSGSSS 471

Query: 501 GSGSKNGGSSSRGRHSHDSGHGGHGRRYRPY 525
            SGSK    + RGR            RY PY
Sbjct: 489 SSGSKRSSDNGRGR-----------SRYNPY 471

[Close]

BLAST of HG10001258 vs. TAIR 10
Match: AT4G00830.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 407.9 bits (1047), Expect = 1.2e-113
Identity = 255/528 (48.30%), Postives = 348/528 (65.91%), Query Frame = 0


Query: 28  DSDERVDLDVDNDPEEVMEEDVEYEEVEEEEDVEEIEEVEEEEEEEEEEEEGEEEDVE-- 87
           D+D+RVD            E+  Y E+E+E + E++EE EEEEEE++++++   ++ E  
Sbjct: 6   DNDDRVDF-----------EEGSYSEMEDEVEEEQVEEYEEEEEEDDDDDDVGNQNAEER 65

Query: 88  EVEDDGNNDNG--INAQNEISNDED---------------------EKKKHAELLALPPH 147
           EVED G+   G   + Q EI+ D+D                     +++K++ LL+LPPH
Sbjct: 66  EVEDYGDTKGGDMEDVQEEIAEDDDNHIDIETADDDEKPPSPIDDEDREKYSHLLSLPPH 125

Query: 148 GSEVYVGGIPQDSSEEDLRTFCESIGEVTEIMPFSQGLMAFCFKQVRVMRSKESNENKGF 207
           GSEV++GG+P+D  EEDLR  CE IGE+ E               VR+M+ ++S ++KG+
Sbjct: 126 GSEVFIGGLPRDVGEEDLRDLCEEIGEIFE---------------VRLMKDRDSGDSKGY 185

Query: 208 AFVTYRGVELASKAIDELNNTEFKGKKIKCSSSQAKHRLFIGNVPRSWGEEDLRKVVTDI 267
           AFV ++  ++A KAI+EL++ EFKGK I+CS S+ K+RLFIGN+P++W E++ RKV+ D+
Sbjct: 186 AFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDV 245

Query: 268 GPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDDNAPTVSWADPK 327
           GPGV  +EL+KD  NT+ NRGFAF+ YYN+ACA+YSRQKM++  FKL+ NAPTV+WADPK
Sbjct: 246 GPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPK 305

Query: 328 NA--DSSAASQVKAVYVKNLPKNVTQEQLKKLFDHHGKITKVVLPPAKSGQERNRIGFVH 387
           ++   S+AA+QVKA+YVKN+P+N + EQLK+LF  HG++TK+V PP K G  +   GFVH
Sbjct: 306 SSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGG--KRDFGFVH 365

Query: 388 FSERSSAMKALKNTEKYELDGQVLECSLAKPQADQKSGGSNSQKSGLLPNYPPRVG---Y 447
           ++ERSSA+KA+K+TE+YE++GQ LE  LAKPQA++K   S S   G  P   P V     
Sbjct: 366 YAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPS-SYSYGAAPTPAPFVHPTFG 425

Query: 448 GFVGGAYGAVNAGYGASG-FGQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGSQMLT 507
           GF    YGA+ AG G +G F QP+IYGRG  P GM M+PMLLPDGR+GYVLQQPG  M  
Sbjct: 426 GFAAAPYGAMGAGLGIAGSFSQPMIYGRGAMPTGMQMVPMLLPDGRVGYVLQQPGMPMAA 485

Query: 508 PPPHPRSGGGGGGGSGGGSGSKNGGSSSRGRHSHDSGHGGHGRRYRPY 525
            PP          GS GGSG  N        H HD   G  GRRYRPY
Sbjct: 486 APPQRPRRNDRNNGSSGGSGRDNS-------HEHDGNRG--GRRYRPY 495

[Close]

BLAST of HG10001258 vs. TAIR 10
Match: AT4G00830.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 407.9 bits (1047), Expect = 1.2e-113
Identity = 255/528 (48.30%), Postives = 348/528 (65.91%), Query Frame = 0


Query: 28  DSDERVDLDVDNDPEEVMEEDVEYEEVEEEEDVEEIEEVEEEEEEEEEEEEGEEEDVE-- 87
           D+D+RVD            E+  Y E+E+E + E++EE EEEEEE++++++   ++ E  
Sbjct: 6   DNDDRVDF-----------EEGSYSEMEDEVEEEQVEEYEEEEEEDDDDDDVGNQNAEER 65

Query: 88  EVEDDGNNDNG--INAQNEISNDED---------------------EKKKHAELLALPPH 147
           EVED G+   G   + Q EI+ D+D                     +++K++ LL+LPPH
Sbjct: 66  EVEDYGDTKGGDMEDVQEEIAEDDDNHIDIETADDDEKPPSPIDDEDREKYSHLLSLPPH 125

Query: 148 GSEVYVGGIPQDSSEEDLRTFCESIGEVTEIMPFSQGLMAFCFKQVRVMRSKESNENKGF 207
           GSEV++GG+P+D  EEDLR  CE IGE+ E               VR+M+ ++S ++KG+
Sbjct: 126 GSEVFIGGLPRDVGEEDLRDLCEEIGEIFE---------------VRLMKDRDSGDSKGY 185

Query: 208 AFVTYRGVELASKAIDELNNTEFKGKKIKCSSSQAKHRLFIGNVPRSWGEEDLRKVVTDI 267
           AFV ++  ++A KAI+EL++ EFKGK I+CS S+ K+RLFIGN+P++W E++ RKV+ D+
Sbjct: 186 AFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDV 245

Query: 268 GPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDDNAPTVSWADPK 327
           GPGV  +EL+KD  NT+ NRGFAF+ YYN+ACA+YSRQKM++  FKL+ NAPTV+WADPK
Sbjct: 246 GPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPK 305

Query: 328 NA--DSSAASQVKAVYVKNLPKNVTQEQLKKLFDHHGKITKVVLPPAKSGQERNRIGFVH 387
           ++   S+AA+QVKA+YVKN+P+N + EQLK+LF  HG++TK+V PP K G  +   GFVH
Sbjct: 306 SSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGG--KRDFGFVH 365

Query: 388 FSERSSAMKALKNTEKYELDGQVLECSLAKPQADQKSGGSNSQKSGLLPNYPPRVG---Y 447
           ++ERSSA+KA+K+TE+YE++GQ LE  LAKPQA++K   S S   G  P   P V     
Sbjct: 366 YAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPS-SYSYGAAPTPAPFVHPTFG 425

Query: 448 GFVGGAYGAVNAGYGASG-FGQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGSQMLT 507
           GF    YGA+ AG G +G F QP+IYGRG  P GM M+PMLLPDGR+GYVLQQPG  M  
Sbjct: 426 GFAAAPYGAMGAGLGIAGSFSQPMIYGRGAMPTGMQMVPMLLPDGRVGYVLQQPGMPMAA 485

Query: 508 PPPHPRSGGGGGGGSGGGSGSKNGGSSSRGRHSHDSGHGGHGRRYRPY 525
            PP          GS GGSG  N        H HD   G  GRRYRPY
Sbjct: 486 APPQRPRRNDRNNGSSGGSGRDNS-------HEHDGNRG--GRRYRPY 495

[Close]

BLAST of HG10001258 vs. TAIR 10
Match: AT4G00830.4 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 391.3 bits (1004), Expect = 1.2e-108
Identity = 249/528 (47.16%), Postives = 340/528 (64.39%), Query Frame = 0


Query: 28  DSDERVDLDVDNDPEEVMEEDVEYEEVEEEEDVEEIEEVEEEEEEEEEEEEGEEEDVE-- 87
           D+D+RVD            E+  Y E+E+E + E++EE EEEEEE++++++   ++ E  
Sbjct: 6   DNDDRVDF-----------EEGSYSEMEDEVEEEQVEEYEEEEEEDDDDDDVGNQNAEER 65

Query: 88  EVEDDGNNDNG--INAQNEISNDED---------------------EKKKHAELLALPPH 147
           EVED G+   G   + Q EI+ D+D                     +++K++ LL+LPPH
Sbjct: 66  EVEDYGDTKGGDMEDVQEEIAEDDDNHIDIETADDDEKPPSPIDDEDREKYSHLLSLPPH 125

Query: 148 GSEVYVGGIPQDSSEEDLRTFCESIGEVTEIMPFSQGLMAFCFKQVRVMRSKESNENKGF 207
           GSEV++GG+P+D  EEDLR  CE IGE+ E               VR+M+ ++S ++KG+
Sbjct: 126 GSEVFIGGLPRDVGEEDLRDLCEEIGEIFE---------------VRLMKDRDSGDSKGY 185

Query: 208 AFVTYRGVELASKAIDELNNTEFKGKKIKCSSSQAKHRLFIGNVPRSWGEEDLRKVVTDI 267
           AFV ++  ++A KAI+EL++ EFK       S    +RLFIGN+P++W E++ RKV+ D+
Sbjct: 186 AFVAFKTKDVAQKAIEELHSKEFKASSTANCSLSLSNRLFIGNIPKNWTEDEFRKVIEDV 245

Query: 268 GPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDDNAPTVSWADPK 327
           GPGV  +EL+KD  NT+ NRGFAF+ YYN+ACA+YSRQKM++  FKL+ NAPTV+WADPK
Sbjct: 246 GPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPK 305

Query: 328 NA--DSSAASQVKAVYVKNLPKNVTQEQLKKLFDHHGKITKVVLPPAKSGQERNRIGFVH 387
           ++   S+AA+QVKA+YVKN+P+N + EQLK+LF  HG++TK+V PP K G  +   GFVH
Sbjct: 306 SSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGG--KRDFGFVH 365

Query: 388 FSERSSAMKALKNTEKYELDGQVLECSLAKPQADQKSGGSNSQKSGLLPNYPPRVG---Y 447
           ++ERSSA+KA+K+TE+YE++GQ LE  LAKPQA++K   S S   G  P   P V     
Sbjct: 366 YAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPS-SYSYGAAPTPAPFVHPTFG 425

Query: 448 GFVGGAYGAVNAGYGASG-FGQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGSQMLT 507
           GF    YGA+ AG G +G F QP+IYGRG  P GM M+PMLLPDGR+GYVLQQPG  M  
Sbjct: 426 GFAAAPYGAMGAGLGIAGSFSQPMIYGRGAMPTGMQMVPMLLPDGRVGYVLQQPGMPMAA 485

Query: 508 PPPHPRSGGGGGGGSGGGSGSKNGGSSSRGRHSHDSGHGGHGRRYRPY 525
            PP          GS GGSG  N        H HD   G  GRRYRPY
Sbjct: 486 APPQRPRRNDRNNGSSGGSGRDNS-------HEHDGNRG--GRRYRPY 495

The following BLAST results are available for this feature:

BLAST of HG10001258 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902706.1	7.3e-262	93.93	heterogeneous nuclear ribonucleoprotein Q [Benincasa hispida] >XP_038902707.1 he...	[more]
XP_031744156.1	4.5e-259	92.99	heterogeneous nuclear ribonucleoprotein Q [Cucumis sativus] >KGN48032.1 hypothet...	[more]
XP_008449579.1	1.1e-257	92.48	PREDICTED: nucleolin [Cucumis melo] >XP_008449580.1 PREDICTED: nucleolin [Cucumi...	[more]
XP_023533658.1	7.9e-248	90.87	heterogeneous nuclear ribonucleoprotein Q-like [Cucurbita pepo subsp. pepo] >XP_...	[more]
XP_022153053.1	2.3e-247	89.64	heterogeneous nuclear ribonucleoprotein Q [Momordica charantia] >XP_022153054.1 ...	[more]

BLAST of HG10001258 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ASP6	1.7e-112	48.30	Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana OX=3702 GN=LIF...	[more]
O43390	2.3e-32	28.41	Heterogeneous nuclear ribonucleoprotein R OS=Homo sapiens OX=9606 GN=HNRNPR PE=1...	[more]
O60506	2.8e-30	29.79	Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens OX=9606 GN=SYNCRIP PE=...	[more]
Q7TMK9	3.7e-30	29.79	Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus OX=10090 GN=Syncrip PE...	[more]
Q7TP47	3.7e-30	29.79	Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus OX=10116 GN=Syncr...	[more]

BLAST of HG10001258 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KI54	2.2e-259	92.99	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G425690 PE=4 SV=1	[more]
A0A1S3BMC2	5.3e-258	92.48	nucleolin OS=Cucumis melo OX=3656 GN=LOC103491420 PE=4 SV=1	[more]
A0A6J1DHV9	1.1e-247	89.64	heterogeneous nuclear ribonucleoprotein Q OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1H0I9	1.9e-247	90.68	heterogeneous nuclear ribonucleoprotein Q-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1FY14	3.2e-247	90.46	heterogeneous nuclear ribonucleoprotein Q-like OS=Cucurbita moschata OX=3662 GN=...	[more]

BLAST of HG10001258 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52660.1	1.3e-139	57.14	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52660.2	1.3e-139	57.14	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G00830.1	1.2e-113	48.30	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G00830.2	1.2e-113	48.30	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G00830.4	1.2e-108	47.16	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 49..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 469..524
None	No IPR available	PANTHER	PTHR10352	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G	coord: 1..491
None	No IPR available	PANTHER	PTHR10352:SF41	RNA RECOGNITION MOTIF	coord: 1..491
None	No IPR available	CDD	cd00590	RRM_SF	coord: 126..213 e-value: 1.45827E-17 score: 75.0341
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 220..297 e-value: 1.3E-10 score: 51.2 coord: 125..213 e-value: 8.1E-15 score: 65.2 coord: 314..387 e-value: 1.5E-15 score: 67.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 315..384 e-value: 3.0E-15 score: 55.8 coord: 221..284 e-value: 2.1E-9 score: 37.1 coord: 166..211 e-value: 1.5E-8 score: 34.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 313..391 score: 15.186867
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 219..301 score: 11.844008
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 124..217 score: 15.527974
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 314..387 e-value: 1.8 score: 11.5 coord: 125..213 e-value: 0.54 score: 16.9
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 43..219 e-value: 9.4E-27 score: 95.9
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 220..300 e-value: 5.8E-21 score: 76.4
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 301..432 e-value: 6.5E-22 score: 80.1
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 121..305
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 309..417

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10001258.1	HG10001258.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding